Wall clock time and date at job start Mon Mar 30 2020 05:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 110.38257 * 2 1 4 4 N 1.46898 * 109.47098 * 299.22275 * 3 2 1 5 5 C 1.47845 * 111.00019 * 290.84169 * 4 3 2 6 6 C 1.54905 * 104.79645 * 213.63687 * 5 4 3 7 7 C 1.55134 * 101.65498 * 37.07261 * 6 5 4 8 8 O 1.42906 * 110.70545 * 82.72547 * 7 6 5 9 9 C 1.50699 * 110.70936 * 205.96127 * 7 6 5 10 10 H 1.08005 * 119.99557 * 113.59772 * 9 7 6 11 11 C 1.37876 * 120.00065 * 293.60319 * 9 7 6 12 12 N 1.31514 * 120.00153 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 119.99984 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46725 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47130 * 119.99729 * 13 11 9 16 16 H 1.48493 * 109.47094 * 239.99947 * 13 11 9 17 17 C 1.47444 * 110.99812 * 170.00234 * 4 3 2 18 18 C 1.53705 * 110.34247 * 122.22194 * 2 1 3 19 19 C 1.52939 * 112.49043 * 121.69960 * 18 2 1 20 20 C 1.55153 * 108.96209 * 329.90258 * 19 18 2 21 21 S 1.83394 * 110.34553 * 237.77185 * 2 1 3 22 22 H 1.09004 * 109.46929 * 181.52743 * 1 2 3 23 23 H 1.08994 * 109.47253 * 301.52781 * 1 2 3 24 24 H 1.09001 * 109.46960 * 61.52778 * 1 2 3 25 25 H 1.08994 * 109.47464 * 59.22736 * 3 2 1 26 26 H 1.09011 * 109.46629 * 179.22475 * 3 2 1 27 27 H 1.08996 * 110.37941 * 332.47153 * 5 4 3 28 28 H 1.09001 * 110.37185 * 94.80964 * 5 4 3 29 29 H 1.09007 * 110.99069 * 278.98017 * 6 5 4 30 30 H 1.09003 * 110.99178 * 155.17063 * 6 5 4 31 31 H 0.96699 * 113.99164 * 66.40649 * 8 7 6 32 32 H 0.96994 * 119.99841 * 180.02562 * 12 11 9 33 33 H 1.08999 * 109.88890 * 242.66107 * 17 4 3 34 34 H 1.08997 * 109.89260 * 3.85232 * 17 4 3 35 35 H 1.09007 * 108.88660 * 0.91330 * 18 2 1 36 36 H 1.08991 * 108.89423 * 242.49804 * 18 2 1 37 37 H 1.08999 * 109.60711 * 209.97123 * 19 18 2 38 38 H 1.08996 * 109.45382 * 89.74390 * 19 18 2 39 39 H 1.09001 * 111.13215 * 283.52933 * 20 19 18 40 40 H 1.09005 * 111.17064 * 159.36138 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 7 1.5996 2.1287 -1.2087 5 6 2.2517 1.5809 -2.4173 6 6 2.4081 2.7947 -3.3669 7 6 2.7412 3.9336 -2.3676 8 8 4.1324 3.9285 -2.0410 9 6 2.3286 5.2708 -2.9268 10 1 1.5320 5.8296 -2.4580 11 6 2.9679 5.7808 -4.0368 12 7 3.9381 5.1006 -4.6074 13 14 2.4559 7.4381 -4.7304 14 1 1.3487 7.9959 -3.9130 15 1 3.6135 8.3676 -4.6970 16 1 1.9981 7.2677 -6.1327 17 6 1.8894 3.5724 -1.1324 18 6 2.0644 -0.7684 1.2192 19 6 2.9639 -1.9404 0.8239 20 6 2.5050 -2.4857 -0.5543 21 16 2.1677 -0.9170 -1.4546 22 1 -0.3633 -1.0273 0.0274 23 1 -0.3633 0.5373 0.8759 24 1 -0.3633 0.4899 -0.9034 25 1 1.6966 1.9580 0.8829 26 1 3.1528 1.4168 0.0139 27 1 3.2282 1.1666 -2.1669 28 1 1.6215 0.8190 -2.8760 29 1 1.4772 2.9992 -3.8959 30 1 3.2278 2.6386 -4.0684 31 1 4.7113 4.1494 -2.7833 32 1 4.3880 5.4596 -5.3880 33 1 0.9582 4.1387 -1.1457 34 1 2.4462 3.7912 -0.2213 35 1 1.2201 -1.1499 1.7936 36 1 2.6335 -0.0828 1.8468 37 1 2.8879 -2.7287 1.5728 38 1 3.9967 -1.5986 0.7564 39 1 1.6002 -3.0858 -0.4579 40 1 3.3003 -3.0530 -1.0378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600166886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:38 Heat of formation + Delta-G solvation = -53.615441 kcal Electronic energy + Delta-G solvation = -19995.964181 eV Core-core repulsion = 17129.232381 eV Total energy + Delta-G solvation = -2866.731800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.67381 -36.84622 -34.58392 -32.08742 -32.00651 -29.24017 -28.07012 -26.90296 -25.50447 -23.97999 -22.11220 -20.66366 -19.55848 -19.26228 -17.10382 -16.21699 -15.73541 -14.93018 -14.87949 -14.62500 -14.05932 -13.81508 -13.71744 -13.30558 -13.05663 -12.63547 -12.44920 -12.00850 -11.85036 -11.65284 -11.56834 -11.25760 -11.21183 -10.99051 -10.77789 -10.69135 -10.49256 -10.46388 -10.37302 -10.25139 -9.84781 -9.30888 -9.15611 -8.58495 -8.01066 -7.66028 -7.29263 -6.17856 -4.24808 2.06281 2.57946 3.23786 3.32298 3.36687 4.32297 4.40523 4.65766 4.77329 4.90416 5.08943 5.13785 5.20712 5.27634 5.51955 5.58703 5.71346 5.75576 5.81354 5.83829 5.99165 6.00576 6.03108 6.15873 6.24398 6.29759 6.41085 6.49064 6.51825 6.70807 7.00219 7.16210 7.48176 7.54758 7.72459 7.82031 7.87586 8.18414 8.76785 9.43223 9.56978 10.89391 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.040006 B = 0.004893 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.724229 B = 5721.302761 C = 5886.721773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.004 4.004 3 C 0.071 3.929 4 N -0.528 5.528 5 C 0.038 3.962 6 C -0.127 4.127 7 C 0.237 3.763 8 O -0.592 6.592 9 C -0.530 4.530 10 H 0.062 0.938 11 C 0.069 3.931 12 N -0.899 5.899 13 Si 0.900 3.100 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.059 3.941 18 C -0.124 4.124 19 C -0.119 4.119 20 C -0.109 4.109 21 S -0.247 6.247 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.383 0.617 32 H 0.266 0.734 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 -12.468 9.114 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.114 4.114 3 C -0.059 4.059 4 N -0.252 5.252 5 C -0.090 4.090 6 C -0.166 4.166 7 C 0.197 3.803 8 O -0.402 6.402 9 C -0.569 4.569 10 H 0.081 0.919 11 C -0.132 4.132 12 N -0.539 5.539 13 Si 0.727 3.273 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.068 4.068 18 C -0.163 4.163 19 C -0.158 4.158 20 C -0.257 4.257 21 S -0.018 6.018 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.235 0.765 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.772 -12.419 8.375 15.446 hybrid contribution 0.711 0.736 0.195 1.042 sum -3.062 -11.682 8.570 14.809 Atomic orbital electron populations 1.21876 0.91672 1.01013 1.03364 1.23282 0.98880 0.96919 0.92309 1.22255 0.97842 0.91073 0.94712 1.63678 1.56154 1.03848 1.01472 1.23102 0.97348 0.97296 0.91289 1.23157 1.01362 0.94141 0.97959 1.19701 0.79453 0.92566 0.88621 1.86069 1.18598 1.93175 1.42408 1.21658 1.19007 1.04079 1.12137 0.91939 1.25009 0.94598 0.97653 0.95972 1.69605 1.23795 1.38196 1.22347 0.86415 0.78562 0.83494 0.78786 1.19658 1.20910 1.20891 1.22807 0.98753 0.86552 0.98713 1.22135 0.99876 0.96925 0.97382 1.22289 1.00571 0.97116 0.95859 1.24469 1.03723 0.99590 0.97901 1.88670 1.84781 1.09859 1.18513 0.93230 0.92408 0.90275 0.90598 0.93784 0.92790 0.91159 0.92083 0.91029 0.76511 0.92369 0.90315 0.93684 0.91110 0.90493 0.90989 0.90756 0.90144 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 8.20 37.16 0.30 -1.25 16 2 C 0.00 -0.05 0.94 -90.25 -0.08 -0.14 16 3 C 0.07 1.17 3.59 -3.82 -0.01 1.16 16 4 N -0.53 -10.27 4.53 -231.25 -1.05 -11.32 16 5 C 0.04 0.80 4.66 -2.30 -0.01 0.79 16 6 C -0.13 -3.05 5.66 -24.60 -0.14 -3.19 16 7 C 0.24 5.98 0.86 -89.95 -0.08 5.90 16 8 O -0.59 -15.75 13.09 -35.23 -0.46 -16.21 16 9 C -0.53 -14.38 8.21 -34.44 -0.28 -14.67 16 10 H 0.06 1.68 7.53 -52.48 -0.40 1.29 16 11 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 12 N -0.90 -24.40 10.69 55.43 0.59 -23.80 16 13 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.06 1.30 6.21 -2.83 -0.02 1.28 16 18 C -0.12 -1.36 5.74 -26.40 -0.15 -1.51 16 19 C -0.12 -1.21 6.34 -25.62 -0.16 -1.38 16 20 C -0.11 -1.22 7.52 38.30 0.29 -0.94 16 21 S -0.25 -3.75 17.14 -107.50 -1.84 -5.59 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 1.19 7.74 -51.93 -0.40 0.79 16 25 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 26 H 0.04 0.80 7.85 -51.92 -0.41 0.39 16 27 H 0.05 1.17 6.56 -51.93 -0.34 0.83 16 28 H 0.07 1.43 6.47 -46.48 -0.30 1.13 16 29 H 0.06 1.51 8.04 -51.93 -0.42 1.09 16 30 H 0.07 1.82 7.76 -51.93 -0.40 1.42 16 31 H 0.38 10.44 6.99 45.56 0.32 10.76 16 32 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.08 1.72 7.63 -51.93 -0.40 1.33 16 34 H 0.04 0.98 7.47 -51.93 -0.39 0.59 16 35 H 0.07 0.68 7.62 -51.92 -0.40 0.28 16 36 H 0.08 0.82 7.62 -51.93 -0.40 0.42 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -27.64 313.99 -9.50 -37.14 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.01 Total: 11.36 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.44 Total: -12.17 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.46 Total: -35.12 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.46 Total: -16.21 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.84 Total: -5.59 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.64 -9.50 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600166886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.478 kcal (2) G-P(sol) polarization free energy of solvation -27.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds