Wall clock time and date at job start Mon Mar 30 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 110.30357 * 2 1 4 4 N 1.46900 * 109.46619 * 51.50787 * 3 2 1 5 5 C 1.47903 * 110.99738 * 177.00771 * 4 3 2 6 6 C 1.53995 * 107.05734 * 214.15305 * 5 4 3 7 7 C 1.54603 * 105.13937 * 1.22439 * 6 5 4 8 8 O 1.42903 * 110.71998 * 263.60025 * 7 6 5 9 9 C 1.50694 * 110.72474 * 140.31692 * 7 6 5 10 10 H 1.08002 * 119.99889 * 241.45126 * 9 7 6 11 11 C 1.37882 * 120.00215 * 61.44986 * 9 7 6 12 12 N 1.31515 * 120.00044 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99952 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47132 * 60.00323 * 13 11 9 15 15 H 1.48497 * 109.46872 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47085 * 300.00334 * 13 11 9 17 17 C 1.48535 * 111.00360 * 59.60993 * 4 3 2 18 18 C 1.53710 * 110.34348 * 237.83329 * 2 1 3 19 19 C 1.52939 * 112.38312 * 238.37473 * 18 2 1 20 20 C 1.54831 * 109.13060 * 30.06558 * 19 18 2 21 21 S 1.83393 * 110.34166 * 122.28632 * 2 1 3 22 22 H 1.09004 * 109.47113 * 176.80145 * 1 2 3 23 23 H 1.09005 * 109.47300 * 296.80077 * 1 2 3 24 24 H 1.08999 * 109.47191 * 56.80518 * 1 2 3 25 25 H 1.09001 * 109.47157 * 171.50281 * 3 2 1 26 26 H 1.08992 * 109.47334 * 291.50527 * 3 2 1 27 27 H 1.08996 * 109.91978 * 333.50048 * 5 4 3 28 28 H 1.08994 * 109.91742 * 94.80106 * 5 4 3 29 29 H 1.08998 * 110.31124 * 120.13429 * 6 5 4 30 30 H 1.08998 * 110.31087 * 242.20827 * 6 5 4 31 31 H 0.96701 * 113.99940 * 298.53728 * 8 7 6 32 32 H 0.96994 * 119.99738 * 180.02562 * 12 11 9 33 33 H 1.09005 * 110.66170 * 278.15360 * 17 4 3 34 34 H 1.08994 * 110.66835 * 41.28530 * 17 4 3 35 35 H 1.09009 * 108.88420 * 359.09627 * 18 2 1 36 36 H 1.08999 * 108.89023 * 117.64673 * 18 2 1 37 37 H 1.08996 * 109.60849 * 149.95643 * 19 18 2 38 38 H 1.09005 * 109.60118 * 270.09746 * 19 18 2 39 39 H 1.08999 * 111.17242 * 200.66186 * 20 19 18 40 40 H 1.09007 * 111.15472 * 76.47510 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0608 1.4350 0.0000 4 7 1.4222 2.1932 1.0841 5 6 1.9641 3.5673 1.1603 6 6 1.9744 3.9669 2.6475 7 6 1.4378 2.7288 3.4020 8 8 0.0388 2.8619 3.6615 9 6 2.2011 2.5128 4.6832 10 1 2.7598 1.6005 4.8317 11 6 2.1864 3.4798 5.6659 12 7 1.5058 4.5906 5.4854 13 14 3.1333 3.2123 7.2538 14 1 4.5753 3.0352 6.9464 15 1 2.9567 4.3908 8.1399 16 1 2.6202 1.9980 7.9376 17 6 1.7029 1.5734 2.4044 18 6 2.0643 -0.7673 -1.2200 19 6 2.9620 -1.9401 -0.8229 20 6 2.5049 -2.4863 0.5518 21 16 2.1674 -0.9185 1.4537 22 1 -0.3633 -1.0261 -0.0573 23 1 -0.3634 0.4634 0.9173 24 1 -0.3633 0.5626 -0.8600 25 1 3.1402 1.4231 0.1518 26 1 1.8336 1.9065 -0.9560 27 1 2.9789 3.5889 0.7632 28 1 1.3274 4.2494 0.5970 29 1 2.9898 4.1961 2.9707 30 1 1.3226 4.8247 2.8133 31 1 -0.1875 3.6189 4.2191 32 1 1.4957 5.2710 6.1766 33 1 1.0241 0.7410 2.5906 34 1 2.7406 1.2454 2.4626 35 1 1.2200 -1.1480 -1.7949 36 1 2.6357 -0.0816 -1.8456 37 1 2.8856 -2.7289 -1.5712 38 1 3.9963 -1.6025 -0.7557 39 1 3.3006 -3.0538 1.0343 40 1 1.6001 -3.0867 0.4554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600166887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:41 Heat of formation + Delta-G solvation = -50.912982 kcal Electronic energy + Delta-G solvation = -20140.817987 eV Core-core repulsion = 17274.203375 eV Total energy + Delta-G solvation = -2866.614613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.69213 -36.79979 -34.55970 -32.12659 -32.03671 -29.10540 -27.96123 -26.88625 -25.59911 -24.01481 -22.06343 -20.40813 -19.96033 -19.03445 -16.96755 -16.11014 -15.74339 -15.26150 -14.80910 -14.22767 -14.09825 -14.03759 -13.57843 -13.36146 -12.99194 -12.46317 -12.35017 -12.26810 -11.91387 -11.66625 -11.49636 -11.23606 -11.14970 -10.91590 -10.80976 -10.59128 -10.56642 -10.47201 -10.27233 -10.16066 -9.76461 -9.42043 -8.88742 -8.49086 -8.02599 -7.73054 -7.25858 -6.13110 -4.20342 2.09899 2.62214 3.29102 3.33321 3.37253 4.34432 4.42334 4.66496 4.78497 4.89987 5.13515 5.15205 5.21147 5.32326 5.54783 5.62037 5.69957 5.77257 5.81251 5.82439 5.93279 6.01519 6.06658 6.11480 6.13161 6.19793 6.27060 6.56630 6.64812 6.76079 7.01937 7.13793 7.46776 7.58953 7.62963 7.76849 7.90168 8.28893 8.82509 9.48039 9.63739 10.93920 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.026135 B = 0.006010 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.119916 B = 4657.828740 C = 5220.144366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.008 4.008 3 C 0.065 3.935 4 N -0.511 5.511 5 C 0.037 3.963 6 C -0.128 4.128 7 C 0.260 3.740 8 O -0.580 6.580 9 C -0.534 4.534 10 H 0.060 0.940 11 C 0.071 3.929 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.048 3.952 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.110 4.110 21 S -0.242 6.242 22 H 0.048 0.952 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.376 0.624 32 H 0.266 0.734 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -8.428 -12.798 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.118 4.118 3 C -0.065 4.065 4 N -0.235 5.235 5 C -0.091 4.091 6 C -0.167 4.167 7 C 0.219 3.781 8 O -0.388 6.388 9 C -0.572 4.572 10 H 0.078 0.922 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.080 4.080 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.257 4.257 21 S -0.013 6.013 22 H 0.067 0.933 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.182 -8.510 -12.051 14.800 hybrid contribution 1.423 0.091 0.156 1.435 sum 2.605 -8.419 -11.895 14.804 Atomic orbital electron populations 1.21886 0.91270 1.00862 1.03980 1.23279 0.99364 0.96562 0.92621 1.22309 0.96368 0.91030 0.96802 1.64848 1.53182 1.02035 1.03473 1.22890 0.96226 0.90329 0.99664 1.22926 1.01703 1.01068 0.91022 1.19309 0.79863 0.88182 0.90704 1.86149 1.25508 1.53666 1.73428 1.21589 1.30583 1.03702 1.01369 0.92188 1.24985 0.94955 0.94696 0.98466 1.69731 1.41693 1.07547 1.34592 0.86575 0.80308 0.77705 0.82941 1.20237 1.21210 1.20065 1.23244 0.99600 0.97821 0.87369 1.22136 0.99852 0.96833 0.97294 1.22237 1.00429 0.97187 0.96021 1.24421 1.03859 0.99720 0.97745 1.88878 1.84196 1.10382 1.17846 0.93314 0.89775 0.92340 0.94238 0.90526 0.95411 0.91893 0.92179 0.91541 0.77544 0.92434 0.89590 0.92543 0.91001 0.90620 0.91029 0.90885 0.88460 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 8.02 37.15 0.30 -1.45 16 2 C -0.01 -0.12 0.79 -90.25 -0.07 -0.19 16 3 C 0.07 1.04 3.83 -3.82 -0.01 1.02 16 4 N -0.51 -10.04 4.43 -230.46 -1.02 -11.07 16 5 C 0.04 0.73 6.70 -2.75 -0.02 0.71 16 6 C -0.13 -3.04 5.26 -25.37 -0.13 -3.17 16 7 C 0.26 6.65 0.95 -89.91 -0.09 6.57 16 8 O -0.58 -15.65 13.10 -35.23 -0.46 -16.11 16 9 C -0.53 -14.76 8.14 -34.44 -0.28 -15.04 16 10 H 0.06 1.67 7.78 -52.49 -0.41 1.27 16 11 C 0.07 1.92 5.28 -17.82 -0.09 1.83 16 12 N -0.90 -24.40 11.02 55.43 0.61 -23.79 16 13 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.05 1.08 3.44 -1.90 -0.01 1.08 16 18 C -0.12 -1.34 5.75 -26.39 -0.15 -1.49 16 19 C -0.12 -1.22 6.31 -25.80 -0.16 -1.38 16 20 C -0.11 -1.30 7.52 38.12 0.29 -1.01 16 21 S -0.24 -3.95 17.35 -107.50 -1.87 -5.82 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 1.50 6.71 -51.93 -0.35 1.15 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.65 7.98 -51.93 -0.41 0.24 16 26 H 0.08 1.08 8.13 -51.93 -0.42 0.65 16 27 H 0.03 0.51 7.69 -51.93 -0.40 0.11 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.49 7.84 -51.93 -0.41 1.08 16 30 H 0.07 1.64 7.99 -51.93 -0.41 1.23 16 31 H 0.38 10.18 7.48 45.56 0.34 10.52 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.09 2.03 5.70 -46.91 -0.27 1.76 16 34 H 0.06 1.31 6.81 -51.93 -0.35 0.96 16 35 H 0.07 0.71 7.62 -51.92 -0.40 0.31 16 36 H 0.08 0.76 7.61 -51.93 -0.40 0.37 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -28.28 313.37 -9.45 -37.73 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.98 Total: 10.69 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.43 Total: -12.53 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.41 Total: -34.86 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.46 Total: -16.11 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -1.87 Total: -5.82 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.28 -9.45 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600166887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.179 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds