Wall clock time and date at job start Mon Mar 30 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 110.30357 * 2 1 4 4 N 1.46900 * 109.46619 * 51.50787 * 3 2 1 5 5 C 1.47903 * 110.99738 * 177.00771 * 4 3 2 6 6 C 1.53995 * 107.05734 * 214.15305 * 5 4 3 7 7 C 1.54603 * 105.13937 * 1.22439 * 6 5 4 8 8 O 1.42903 * 110.71998 * 263.60025 * 7 6 5 9 9 C 1.50694 * 110.72474 * 140.31692 * 7 6 5 10 10 H 1.08002 * 119.99889 * 241.45126 * 9 7 6 11 11 C 1.37882 * 120.00215 * 61.44986 * 9 7 6 12 12 N 1.31515 * 120.00044 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99952 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47132 * 60.00323 * 13 11 9 15 15 H 1.48497 * 109.46872 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47085 * 300.00334 * 13 11 9 17 17 C 1.48535 * 111.00360 * 59.60993 * 4 3 2 18 18 C 1.53710 * 110.34348 * 237.83329 * 2 1 3 19 19 C 1.52939 * 112.38312 * 238.37473 * 18 2 1 20 20 C 1.54831 * 109.13060 * 30.06558 * 19 18 2 21 21 S 1.83393 * 110.34166 * 122.28632 * 2 1 3 22 22 H 1.09004 * 109.47113 * 176.80145 * 1 2 3 23 23 H 1.09005 * 109.47300 * 296.80077 * 1 2 3 24 24 H 1.08999 * 109.47191 * 56.80518 * 1 2 3 25 25 H 1.09001 * 109.47157 * 171.50281 * 3 2 1 26 26 H 1.08992 * 109.47334 * 291.50527 * 3 2 1 27 27 H 1.08996 * 109.91978 * 333.50048 * 5 4 3 28 28 H 1.08994 * 109.91742 * 94.80106 * 5 4 3 29 29 H 1.08998 * 110.31124 * 120.13429 * 6 5 4 30 30 H 1.08998 * 110.31087 * 242.20827 * 6 5 4 31 31 H 0.96701 * 113.99940 * 298.53728 * 8 7 6 32 32 H 0.96994 * 119.99738 * 180.02562 * 12 11 9 33 33 H 1.09005 * 110.66170 * 278.15360 * 17 4 3 34 34 H 1.08994 * 110.66835 * 41.28530 * 17 4 3 35 35 H 1.09009 * 108.88420 * 359.09627 * 18 2 1 36 36 H 1.08999 * 108.89023 * 117.64673 * 18 2 1 37 37 H 1.08996 * 109.60849 * 149.95643 * 19 18 2 38 38 H 1.09005 * 109.60118 * 270.09746 * 19 18 2 39 39 H 1.08999 * 111.17242 * 200.66186 * 20 19 18 40 40 H 1.09007 * 111.15472 * 76.47510 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0608 1.4350 0.0000 4 7 1.4222 2.1932 1.0841 5 6 1.9641 3.5673 1.1603 6 6 1.9744 3.9669 2.6475 7 6 1.4378 2.7288 3.4020 8 8 0.0388 2.8619 3.6615 9 6 2.2011 2.5128 4.6832 10 1 2.7598 1.6005 4.8317 11 6 2.1864 3.4798 5.6659 12 7 1.5058 4.5906 5.4854 13 14 3.1333 3.2123 7.2538 14 1 4.5753 3.0352 6.9464 15 1 2.9567 4.3908 8.1399 16 1 2.6202 1.9980 7.9376 17 6 1.7029 1.5734 2.4044 18 6 2.0643 -0.7673 -1.2200 19 6 2.9620 -1.9401 -0.8229 20 6 2.5049 -2.4863 0.5518 21 16 2.1674 -0.9185 1.4537 22 1 -0.3633 -1.0261 -0.0573 23 1 -0.3634 0.4634 0.9173 24 1 -0.3633 0.5626 -0.8600 25 1 3.1402 1.4231 0.1518 26 1 1.8336 1.9065 -0.9560 27 1 2.9789 3.5889 0.7632 28 1 1.3274 4.2494 0.5970 29 1 2.9898 4.1961 2.9707 30 1 1.3226 4.8247 2.8133 31 1 -0.1875 3.6189 4.2191 32 1 1.4957 5.2710 6.1766 33 1 1.0241 0.7410 2.5906 34 1 2.7406 1.2454 2.4626 35 1 1.2200 -1.1480 -1.7949 36 1 2.6357 -0.0816 -1.8456 37 1 2.8856 -2.7289 -1.5712 38 1 3.9963 -1.6025 -0.7557 39 1 3.3006 -3.0538 1.0343 40 1 1.6001 -3.0867 0.4554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600166887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:40 Heat of formation + Delta-G solvation = -69.970249 kcal Electronic energy + Delta-G solvation = -20141.644373 eV Core-core repulsion = 17274.203375 eV Total energy + Delta-G solvation = -2867.440998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30431 -38.08751 -36.23069 -34.16688 -33.39394 -30.74228 -29.75654 -27.94922 -27.22135 -25.64323 -23.16244 -21.88968 -21.66676 -20.44176 -18.99996 -17.38762 -17.21859 -16.89014 -16.40948 -15.87765 -15.60293 -15.35264 -15.03733 -14.62774 -14.27779 -14.09245 -13.85770 -13.58167 -13.35108 -13.31251 -13.10026 -12.75183 -12.55736 -12.49816 -12.39324 -12.28721 -12.18392 -11.77178 -11.65406 -11.56569 -11.36080 -11.11510 -10.63796 -10.27248 -10.08501 -9.28133 -8.56837 -8.21276 -6.36640 1.00125 1.38383 1.39911 1.47747 1.58833 2.37507 3.02087 3.11681 3.67857 3.70107 3.91775 4.00377 4.08683 4.16137 4.20793 4.36251 4.42535 4.47138 4.56947 4.66816 4.73728 4.78287 4.84740 4.88311 4.94048 5.01248 5.04230 5.10813 5.15110 5.25313 5.27014 5.47859 5.50812 5.58315 5.77101 5.92047 6.20166 6.31273 6.68448 7.34698 7.49611 8.83883 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.026135 B = 0.006010 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.119916 B = 4657.828740 C = 5220.144366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.006 3.994 3 C 0.063 3.937 4 N -0.515 5.515 5 C 0.043 3.957 6 C -0.120 4.120 7 C 0.239 3.761 8 O -0.589 6.589 9 C -0.562 4.562 10 H 0.045 0.955 11 C 0.032 3.968 12 N -0.909 5.909 13 Si 0.956 3.044 14 H -0.273 1.273 15 H -0.276 1.276 16 H -0.277 1.277 17 C 0.073 3.927 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.085 4.085 21 S -0.347 6.347 22 H 0.061 0.939 23 H 0.042 0.958 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.106 0.894 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.370 0.630 32 H 0.269 0.731 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 -9.458 -15.062 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.103 4.103 3 C -0.067 4.067 4 N -0.239 5.239 5 C -0.085 4.085 6 C -0.158 4.158 7 C 0.199 3.801 8 O -0.396 6.396 9 C -0.600 4.600 10 H 0.064 0.936 11 C -0.169 4.169 12 N -0.549 5.549 13 Si 0.781 3.219 14 H -0.198 1.198 15 H -0.201 1.201 16 H -0.202 1.202 17 C -0.056 4.056 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.232 4.232 21 S -0.118 6.118 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.124 0.876 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.218 0.782 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.778 -9.534 -14.330 17.304 hybrid contribution 1.219 0.354 0.839 1.522 sum 2.997 -9.180 -13.491 16.591 Atomic orbital electron populations 1.21801 0.91483 1.01575 1.02561 1.23318 0.98978 0.95587 0.92448 1.22466 0.95949 0.91920 0.96318 1.64819 1.53942 1.02034 1.03082 1.22832 0.97822 0.90862 0.96951 1.22702 0.99779 0.99641 0.93727 1.19609 0.78864 0.90459 0.91166 1.86146 1.26699 1.53466 1.73287 1.21807 1.31506 1.03583 1.03140 0.93623 1.25654 0.95666 0.94400 1.01142 1.69810 1.41920 1.07798 1.35336 0.85658 0.79129 0.77704 0.79401 1.19788 1.20115 1.20207 1.22858 0.98313 0.96213 0.88207 1.22147 1.00901 0.97072 0.95610 1.22245 1.00005 0.97687 0.95448 1.24466 1.04621 0.96533 0.97622 1.89214 1.84845 1.15405 1.22379 0.91969 0.93834 0.90524 0.94669 0.87633 0.93592 0.90126 0.94108 0.93242 0.78207 0.92176 0.91119 0.93770 0.88999 0.89055 0.87861 0.91091 0.87705 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 8.02 71.98 0.58 -2.58 16 2 C 0.01 0.17 0.79 -10.56 -0.01 0.16 16 3 C 0.06 1.88 3.83 86.30 0.33 2.21 16 4 N -0.51 -20.00 4.43 -883.03 -3.91 -23.91 16 5 C 0.04 1.68 6.70 86.45 0.58 2.26 16 6 C -0.12 -5.80 5.26 31.48 0.17 -5.63 16 7 C 0.24 12.68 0.95 -10.33 -0.01 12.67 16 8 O -0.59 -33.01 13.10 -148.98 -1.95 -34.96 16 9 C -0.56 -32.23 8.14 25.60 0.21 -32.02 16 10 H 0.05 2.67 7.78 -2.91 -0.02 2.64 16 11 C 0.03 1.77 5.28 84.66 0.45 2.22 16 12 N -0.91 -50.50 11.02 21.45 0.24 -50.26 16 13 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 C 0.07 3.38 3.44 86.65 0.30 3.68 16 18 C -0.12 -2.12 5.75 30.81 0.18 -1.94 16 19 C -0.12 -1.90 6.31 31.20 0.20 -1.70 16 20 C -0.09 -1.81 7.52 72.61 0.55 -1.27 16 21 S -0.35 -11.33 17.35 -56.49 -0.98 -12.31 16 22 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 23 H 0.04 1.55 6.71 -2.38 -0.02 1.54 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 25 H 0.04 1.10 7.98 -2.39 -0.02 1.08 16 26 H 0.11 2.57 8.13 -2.39 -0.02 2.55 16 27 H 0.05 1.62 7.69 -2.39 -0.02 1.60 16 28 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.04 2.07 7.84 -2.39 -0.02 2.06 16 30 H 0.05 2.51 7.99 -2.39 -0.02 2.49 16 31 H 0.37 20.91 7.48 -74.06 -0.55 20.36 16 32 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.07 3.50 5.70 -5.57 -0.03 3.47 16 34 H 0.04 2.14 6.81 -2.39 -0.02 2.12 16 35 H 0.09 1.34 7.62 -2.38 -0.02 1.32 16 36 H 0.09 1.41 7.61 -2.39 -0.02 1.39 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -63.51 313.37 -0.63 -64.14 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.44 Total: 33.14 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 3.51 Total: -21.94 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -3.68 Total: -74.17 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.95 Total: -34.96 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -11.33 SS G_CDS: -0.98 Total: -12.31 kcal Total: -63.51 -0.63 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600166887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.831 kcal (2) G-P(sol) polarization free energy of solvation -63.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds