Wall clock time and date at job start Mon Mar 30 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00042 * 2 1 4 4 H 1.08995 * 110.88679 * 32.42582 * 3 2 1 5 5 C 1.54910 * 111.00304 * 268.54267 * 3 2 1 6 6 N 1.47424 * 104.83269 * 204.91322 * 5 3 2 7 7 C 1.34770 * 125.64726 * 204.09009 * 6 5 3 8 8 O 1.21283 * 120.00059 * 180.02562 * 7 6 5 9 9 C 1.50697 * 120.00483 * 0.02904 * 7 6 5 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.47025 * 108.70103 * 24.35987 * 6 5 3 20 20 C 1.53001 * 109.88055 * 118.12749 * 19 6 5 21 21 C 1.52996 * 109.88003 * 239.28965 * 19 6 5 22 22 O 1.42899 * 109.47518 * 303.54779 * 21 19 6 23 23 C 1.54327 * 107.26539 * 358.58415 * 19 6 5 24 24 H 1.08996 * 109.47238 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47012 * 300.00304 * 1 2 3 26 26 H 1.09002 * 109.46986 * 60.00218 * 1 2 3 27 27 H 1.09005 * 110.36258 * 86.07867 * 5 3 2 28 28 H 1.08994 * 110.46074 * 323.80565 * 5 3 2 29 29 H 1.09004 * 109.46801 * 59.99704 * 9 7 6 30 30 H 1.09000 * 109.47461 * 300.00236 * 9 7 6 31 31 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 32 32 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47092 * 61.45385 * 20 19 6 35 35 H 1.09002 * 109.46759 * 181.45197 * 20 19 6 36 36 H 1.09003 * 109.47050 * 301.44937 * 20 19 6 37 37 H 1.09008 * 109.46906 * 63.55094 * 21 19 6 38 38 H 1.09004 * 109.46954 * 183.54179 * 21 19 6 39 39 H 0.96695 * 113.99832 * 179.97438 * 22 21 19 40 40 H 1.09001 * 110.85314 * 219.67227 * 23 19 6 41 41 H 1.08997 * 110.67286 * 96.51960 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3830 2.0101 0.5460 5 6 2.2697 1.7978 -1.4457 6 7 3.3611 2.7807 -1.3195 7 6 3.6195 3.7826 -2.1831 8 8 4.5486 4.5349 -1.9786 9 6 2.7541 3.9684 -3.4027 10 6 3.2584 5.1673 -4.2083 11 6 2.3933 5.3526 -5.4282 12 1 1.5661 4.6825 -5.6105 13 6 2.6539 6.3814 -6.3084 14 7 3.6609 7.1976 -6.0862 15 14 1.5768 6.6157 -7.8165 16 1 0.4471 7.5197 -7.4823 17 1 2.3819 7.2137 -8.9117 18 1 1.0452 5.3002 -8.2544 19 6 4.1250 2.4829 -0.0991 20 6 5.5709 2.1377 -0.4615 21 6 4.0950 3.6896 0.8409 22 8 4.5994 4.8387 0.1573 23 6 3.4486 1.2739 0.5810 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.3761 2.2730 -1.8507 28 1 2.5781 0.9677 -2.0812 29 1 1.7240 4.1462 -3.0935 30 1 2.7983 3.0710 -4.0198 31 1 4.2885 4.9899 -4.5174 32 1 3.2137 6.0645 -3.5910 33 1 3.8445 7.9212 -6.7056 34 1 6.0365 2.9926 -0.9518 35 1 6.1241 1.8932 0.4452 36 1 5.5819 1.2815 -1.1360 37 1 3.0693 3.8771 1.1589 38 1 4.7144 3.4853 1.7143 39 1 4.6092 5.6428 0.6942 40 1 3.4299 1.3982 1.6638 41 1 3.9539 0.3472 0.3094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601769930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:01 Heat of formation + Delta-G solvation = -127.688529 kcal Electronic energy + Delta-G solvation = -22095.703959 eV Core-core repulsion = 18783.007237 eV Total energy + Delta-G solvation = -3312.696721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36122 -38.10752 -36.89623 -35.55883 -33.37642 -32.12836 -30.57657 -30.42132 -26.79247 -26.45749 -25.68535 -25.10362 -22.44988 -21.62071 -19.88605 -17.98336 -17.34346 -16.85987 -16.72888 -16.02440 -15.35274 -15.19597 -14.89355 -14.79861 -14.41722 -14.05481 -13.69053 -13.29976 -13.09532 -12.77265 -12.34120 -12.23835 -12.08014 -11.98523 -11.86439 -11.55909 -11.35002 -11.07470 -10.90271 -10.80331 -10.66866 -10.55177 -9.93016 -9.85914 -9.67334 -9.51090 -9.04959 -8.68474 -8.28289 -8.17622 -5.91256 -3.95151 3.12042 3.35740 3.41731 3.44587 3.51120 3.66929 4.26024 4.33772 4.51076 4.60559 4.77418 5.00354 5.06156 5.12325 5.15212 5.33050 5.38210 5.43508 5.46023 5.47528 5.54877 5.66183 5.70013 5.73958 5.79914 5.86980 6.08014 6.32116 6.35478 6.50597 6.77450 6.92433 7.01206 7.80426 7.95148 7.98349 8.07819 8.14407 8.45731 9.04752 9.15695 9.67840 11.19689 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.004881 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.203425 B = 5734.786938 C = 6774.965677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.074 3.926 4 H 0.077 0.923 5 C 0.082 3.918 6 N -0.620 5.620 7 C 0.520 3.480 8 O -0.480 6.480 9 C -0.124 4.124 10 C 0.039 3.961 11 C -0.525 4.525 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.167 3.833 20 C -0.152 4.152 21 C 0.069 3.931 22 O -0.519 6.519 23 C -0.116 4.116 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.036 0.964 38 H 0.044 0.956 39 H 0.359 0.641 40 H 0.084 0.916 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 -13.677 16.950 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.015 3.985 4 H 0.095 0.905 5 C -0.042 4.042 6 N -0.360 5.360 7 C 0.309 3.691 8 O -0.351 6.351 9 C -0.164 4.164 10 C 0.002 3.998 11 C -0.564 4.564 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.081 3.919 20 C -0.210 4.210 21 C -0.010 4.010 22 O -0.322 6.322 23 C -0.154 4.154 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.204 0.796 40 H 0.102 0.898 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.229 -13.607 16.407 21.558 hybrid contribution -1.041 0.654 -0.316 1.270 sum -4.270 -12.952 16.091 21.093 Atomic orbital electron populations 1.22833 0.80729 1.02891 1.00348 1.87905 1.19962 1.26636 1.94857 1.23283 0.94647 0.84881 0.95654 0.90472 1.22638 0.91527 0.92960 0.97091 1.48720 1.31229 1.31421 1.24596 1.21165 0.86083 0.78271 0.83566 1.90712 1.29852 1.41844 1.72658 1.21837 0.98313 1.03097 0.93112 1.18881 0.96658 0.90971 0.93327 1.21237 1.14141 1.13397 1.07600 0.92768 1.25015 0.95317 0.95955 0.98050 1.70005 1.28604 1.17203 1.37027 0.86613 0.80416 0.78244 0.82801 1.20730 1.21230 1.19927 1.20864 0.93117 0.92246 0.85636 1.22084 0.94748 1.02810 1.01402 1.22510 0.96913 0.87872 0.93740 1.87246 1.86727 1.18084 1.40103 1.22721 0.94063 0.98302 1.00313 0.89489 0.93964 0.93539 0.90417 0.90849 0.90977 0.90816 0.95888 0.95818 0.93022 0.89949 0.92490 0.92680 0.94536 0.93837 0.79596 0.89772 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.89 101.05 1.10 1.32 16 2 O -0.38 -3.89 10.51 -35.23 -0.37 -4.26 16 3 C 0.07 0.77 3.49 -24.58 -0.09 0.69 16 4 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 5 C 0.08 1.05 6.42 -2.53 -0.02 1.03 16 6 N -0.62 -9.86 2.82 -155.81 -0.44 -10.30 16 7 C 0.52 10.70 7.26 -10.99 -0.08 10.62 16 8 O -0.48 -11.52 11.58 -19.43 -0.22 -11.74 16 9 C -0.12 -2.68 4.64 -27.89 -0.13 -2.81 16 10 C 0.04 1.09 4.26 -27.88 -0.12 0.97 16 11 C -0.53 -15.27 9.11 -34.44 -0.31 -15.58 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -27.86 13.29 55.43 0.74 -27.12 16 15 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.17 2.23 0.80 -130.84 -0.10 2.12 16 20 C -0.15 -2.12 8.32 37.16 0.31 -1.81 16 21 C 0.07 0.89 5.97 37.16 0.22 1.11 16 22 O -0.52 -8.56 9.16 -60.22 -0.55 -9.11 16 23 C -0.12 -1.17 5.75 -24.89 -0.14 -1.32 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.27 8.11 -51.92 -0.42 -0.15 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.96 7.48 -51.93 -0.39 0.57 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.45 7.85 -51.93 -0.41 1.04 16 30 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.08 1.46 6.59 -51.93 -0.34 1.11 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.36 4.45 9.12 45.56 0.42 4.87 16 40 H 0.08 0.68 7.83 -51.93 -0.41 0.28 16 41 H 0.09 0.92 7.85 -51.93 -0.41 0.51 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -35.61 330.70 -6.48 -42.09 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.13 Total: 0.52 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 0.54 Total: -2.04 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.30 Total: -37.42 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -1.15 Total: -25.11 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.61 -6.48 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601769930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.601 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds