Wall clock time and date at job start Mon Mar 30 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00042 * 2 1 4 4 H 1.08995 * 110.88679 * 32.42582 * 3 2 1 5 5 C 1.54910 * 111.00304 * 268.54267 * 3 2 1 6 6 N 1.47424 * 104.83269 * 204.91322 * 5 3 2 7 7 C 1.34770 * 125.64726 * 204.09009 * 6 5 3 8 8 O 1.21283 * 120.00059 * 180.02562 * 7 6 5 9 9 C 1.50697 * 120.00483 * 0.02904 * 7 6 5 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.47025 * 108.70103 * 24.35987 * 6 5 3 20 20 C 1.53001 * 109.88055 * 118.12749 * 19 6 5 21 21 C 1.52996 * 109.88003 * 239.28965 * 19 6 5 22 22 O 1.42899 * 109.47518 * 303.54779 * 21 19 6 23 23 C 1.54327 * 107.26539 * 358.58415 * 19 6 5 24 24 H 1.08996 * 109.47238 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47012 * 300.00304 * 1 2 3 26 26 H 1.09002 * 109.46986 * 60.00218 * 1 2 3 27 27 H 1.09005 * 110.36258 * 86.07867 * 5 3 2 28 28 H 1.08994 * 110.46074 * 323.80565 * 5 3 2 29 29 H 1.09004 * 109.46801 * 59.99704 * 9 7 6 30 30 H 1.09000 * 109.47461 * 300.00236 * 9 7 6 31 31 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 32 32 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47092 * 61.45385 * 20 19 6 35 35 H 1.09002 * 109.46759 * 181.45197 * 20 19 6 36 36 H 1.09003 * 109.47050 * 301.44937 * 20 19 6 37 37 H 1.09008 * 109.46906 * 63.55094 * 21 19 6 38 38 H 1.09004 * 109.46954 * 183.54179 * 21 19 6 39 39 H 0.96695 * 113.99832 * 179.97438 * 22 21 19 40 40 H 1.09001 * 110.85314 * 219.67227 * 23 19 6 41 41 H 1.08997 * 110.67286 * 96.51960 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3830 2.0101 0.5460 5 6 2.2697 1.7978 -1.4457 6 7 3.3611 2.7807 -1.3195 7 6 3.6195 3.7826 -2.1831 8 8 4.5486 4.5349 -1.9786 9 6 2.7541 3.9684 -3.4027 10 6 3.2584 5.1673 -4.2083 11 6 2.3933 5.3526 -5.4282 12 1 1.5661 4.6825 -5.6105 13 6 2.6539 6.3814 -6.3084 14 7 3.6609 7.1976 -6.0862 15 14 1.5768 6.6157 -7.8165 16 1 0.4471 7.5197 -7.4823 17 1 2.3819 7.2137 -8.9117 18 1 1.0452 5.3002 -8.2544 19 6 4.1250 2.4829 -0.0991 20 6 5.5709 2.1377 -0.4615 21 6 4.0950 3.6896 0.8409 22 8 4.5994 4.8387 0.1573 23 6 3.4486 1.2739 0.5810 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.3761 2.2730 -1.8507 28 1 2.5781 0.9677 -2.0812 29 1 1.7240 4.1462 -3.0935 30 1 2.7983 3.0710 -4.0198 31 1 4.2885 4.9899 -4.5174 32 1 3.2137 6.0645 -3.5910 33 1 3.8445 7.9212 -6.7056 34 1 6.0365 2.9926 -0.9518 35 1 6.1241 1.8932 0.4452 36 1 5.5819 1.2815 -1.1360 37 1 3.0693 3.8771 1.1589 38 1 4.7144 3.4853 1.7143 39 1 4.6092 5.6428 0.6942 40 1 3.4299 1.3982 1.6638 41 1 3.9539 0.3472 0.3094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601769930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:01 Heat of formation + Delta-G solvation = -153.914284 kcal Electronic energy + Delta-G solvation = -22096.841193 eV Core-core repulsion = 18783.007237 eV Total energy + Delta-G solvation = -3313.833955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.52549 -39.25894 -38.06440 -36.68119 -35.53178 -33.57397 -32.39283 -31.45951 -27.80692 -27.61228 -27.24825 -26.12970 -24.16484 -22.77138 -21.31773 -19.36139 -18.70414 -18.28351 -17.76833 -17.52479 -16.58696 -16.47907 -16.45452 -15.80123 -15.75152 -15.34745 -14.88112 -14.58419 -14.34065 -14.18122 -13.95086 -13.46254 -13.39432 -13.19249 -13.00567 -12.95023 -12.78020 -12.48317 -12.45223 -12.16721 -11.94707 -11.86224 -11.60198 -11.57209 -11.28143 -10.75887 -10.68172 -10.56867 -10.29117 -9.48256 -8.18006 -6.32427 1.40740 1.44006 1.54967 1.92465 1.98426 2.42455 2.79589 3.14485 3.33971 3.44252 3.63607 3.98061 4.03572 4.11033 4.17327 4.37876 4.45043 4.48054 4.49424 4.55409 4.59099 4.63258 4.68417 4.72294 4.81339 4.87279 4.92579 4.95474 5.02701 5.09302 5.33293 5.47853 5.63470 5.65646 5.85124 6.18047 6.21324 6.65702 6.86119 7.02669 7.37313 7.54108 8.94689 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.004881 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.203425 B = 5734.786938 C = 6774.965677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.387 6.387 3 C 0.085 3.915 4 H 0.092 0.908 5 C 0.073 3.927 6 N -0.614 5.614 7 C 0.517 3.483 8 O -0.526 6.526 9 C -0.112 4.112 10 C 0.049 3.951 11 C -0.545 4.545 12 H 0.072 0.928 13 C -0.005 4.005 14 N -0.937 5.937 15 Si 0.974 3.026 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.257 1.257 19 C 0.156 3.844 20 C -0.148 4.148 21 C 0.064 3.936 22 O -0.557 6.557 23 C -0.104 4.104 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.088 0.912 31 H -0.020 1.020 32 H -0.017 1.017 33 H 0.263 0.737 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.371 0.629 40 H 0.114 0.886 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 -15.732 17.940 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.305 6.305 3 C 0.026 3.974 4 H 0.110 0.890 5 C -0.051 4.051 6 N -0.352 5.352 7 C 0.306 3.694 8 O -0.400 6.400 9 C -0.152 4.152 10 C 0.012 3.988 11 C -0.582 4.582 12 H 0.090 0.910 13 C -0.203 4.203 14 N -0.576 5.576 15 Si 0.798 3.202 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.181 1.181 19 C 0.071 3.929 20 C -0.206 4.206 21 C -0.015 4.015 22 O -0.362 6.362 23 C -0.142 4.142 24 H 0.119 0.881 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.106 0.894 31 H -0.002 1.002 32 H 0.001 0.999 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.217 0.783 40 H 0.133 0.867 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.539 -15.721 17.439 24.124 hybrid contribution -0.317 1.241 -0.566 1.400 sum -5.856 -14.480 16.873 22.993 Atomic orbital electron populations 1.23039 0.79288 1.04131 1.01043 1.87896 1.21553 1.26241 1.94770 1.23166 0.95187 0.85405 0.93651 0.89031 1.22905 0.90527 0.92183 0.99453 1.48506 1.31987 1.30247 1.24431 1.20798 0.85399 0.79186 0.83971 1.90704 1.31521 1.43978 1.73838 1.21573 0.99258 1.00805 0.93595 1.18621 0.94591 0.91997 0.93618 1.21692 1.14634 1.13914 1.08003 0.91011 1.26130 0.96766 0.95388 1.01967 1.70187 1.30807 1.17999 1.38652 0.85317 0.78198 0.78977 0.77723 1.19530 1.21009 1.18064 1.21240 0.92669 0.94155 0.84810 1.22024 0.95520 1.00726 1.02339 1.22716 0.98133 0.86470 0.94152 1.87219 1.87225 1.19703 1.42047 1.22697 0.93319 0.96533 1.01660 0.88099 0.92594 0.93518 0.89974 0.90776 0.89048 0.89358 1.00205 0.99860 0.92828 0.94432 0.89555 0.92755 0.93280 0.90837 0.78252 0.86726 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.89 113.37 1.23 1.48 16 2 O -0.39 -6.68 10.51 -148.98 -1.57 -8.25 16 3 C 0.08 1.49 3.49 31.99 0.11 1.60 16 4 H 0.09 1.38 7.90 -2.39 -0.02 1.36 16 5 C 0.07 1.71 6.42 86.86 0.56 2.27 16 6 N -0.61 -19.16 2.82 -765.26 -2.16 -21.31 16 7 C 0.52 21.96 7.26 87.66 0.64 22.60 16 8 O -0.53 -26.78 11.58 20.85 0.24 -26.54 16 9 C -0.11 -4.97 4.64 29.85 0.14 -4.84 16 10 C 0.05 2.89 4.26 29.85 0.13 3.01 16 11 C -0.54 -32.17 9.11 25.60 0.23 -31.94 16 12 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 13 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 14 N -0.94 -60.69 13.29 21.45 0.28 -60.40 16 15 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 C 0.16 3.91 0.80 3.95 0.00 3.92 16 20 C -0.15 -4.05 8.32 71.98 0.60 -3.45 16 21 C 0.06 1.54 5.97 71.98 0.43 1.97 16 22 O -0.56 -18.82 9.16 -125.09 -1.15 -19.97 16 23 C -0.10 -1.74 5.75 31.78 0.18 -1.56 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.52 8.11 -2.38 -0.02 0.50 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.08 1.86 7.48 -2.38 -0.02 1.84 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.09 3.64 7.85 -2.38 -0.02 3.63 16 30 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 31 H -0.02 -1.35 8.10 -2.38 -0.02 -1.37 16 32 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 33 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 34 H 0.04 1.37 6.59 -2.39 -0.02 1.36 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 38 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.37 9.57 9.12 -74.06 -0.68 8.90 16 40 H 0.11 1.29 7.83 -2.39 -0.02 1.27 16 41 H 0.10 1.58 7.85 -2.39 -0.02 1.56 16 Total: -1.00 -81.57 330.70 2.73 -78.84 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.33 Total: 15.14 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 4.72 Total: -4.78 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.87 Total: -81.71 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -2.47 Total: -54.76 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -81.57 2.73 -78.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601769930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.072 kcal (2) G-P(sol) polarization free energy of solvation -81.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds