Wall clock time and date at job start Mon Mar 30 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 H 1.09001 * 110.88663 * 330.70442 * 3 2 1 5 5 C 1.54909 * 110.99948 * 94.58191 * 3 2 1 6 6 N 1.47528 * 104.78251 * 81.08840 * 5 3 2 7 7 C 1.34780 * 125.63656 * 204.07848 * 6 5 3 8 8 O 1.21277 * 119.99912 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99841 * 0.04561 * 7 6 5 10 10 C 1.52991 * 109.47110 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47510 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99814 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00385 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00044 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00065 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47380 * 60.00593 * 15 13 11 17 17 H 1.48508 * 109.47105 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47481 * 300.00121 * 15 13 11 19 19 C 1.47016 * 108.71551 * 24.11792 * 6 5 3 20 20 C 1.53002 * 110.01386 * 239.45216 * 19 6 5 21 21 C 1.53006 * 109.88668 * 118.35912 * 19 6 5 22 22 O 1.42902 * 109.46879 * 62.18778 * 21 19 6 23 23 C 1.54326 * 107.27254 * 358.94449 * 19 6 5 24 24 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 25 25 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 26 26 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08999 * 110.36339 * 199.90182 * 5 3 2 28 28 H 1.08998 * 110.37290 * 322.22338 * 5 3 2 29 29 H 1.08999 * 109.46936 * 299.99544 * 9 7 6 30 30 H 1.08998 * 109.47123 * 59.99594 * 9 7 6 31 31 H 1.09000 * 109.47169 * 300.00137 * 10 9 7 32 32 H 1.09006 * 109.47481 * 59.99603 * 10 9 7 33 33 H 0.97004 * 119.99931 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.47572 * 177.88238 * 20 19 6 35 35 H 1.08999 * 109.46758 * 297.88850 * 20 19 6 36 36 H 1.09006 * 109.46755 * 57.88299 * 20 19 6 37 37 H 1.09000 * 109.47319 * 182.19378 * 21 19 6 38 38 H 1.09003 * 109.46735 * 302.19351 * 21 19 6 39 39 H 0.96699 * 113.99405 * 180.02562 * 22 21 19 40 40 H 1.09005 * 110.71686 * 219.44607 * 23 19 6 41 41 H 1.08991 * 110.87523 * 96.24452 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3570 2.0217 -0.4983 5 6 2.3417 1.7656 1.4416 6 7 3.6273 1.1150 1.7582 7 6 4.0837 0.8387 2.9959 8 8 5.1605 0.2992 3.1387 9 6 3.2559 1.1996 4.2023 10 6 3.9969 0.7803 5.4734 11 6 3.1694 1.1418 6.6798 12 1 2.2105 1.6222 6.5527 13 6 3.6359 0.8583 7.9459 14 7 4.8033 0.2728 8.1008 15 14 2.6097 1.3058 9.4413 16 1 1.3039 0.6018 9.3743 17 1 3.3292 0.8988 10.6751 18 1 2.3807 2.7728 9.4636 19 6 4.3285 0.8188 0.5005 20 6 4.5828 -0.6854 0.3844 21 6 5.6574 1.5760 0.4547 22 8 6.4937 1.1353 1.5263 23 6 3.4174 1.2877 -0.6535 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.4458 2.8499 1.4791 28 1 1.5673 1.4339 2.1332 29 1 3.0872 2.2764 4.2182 30 1 2.2977 0.6824 4.1534 31 1 4.1654 -0.2965 5.4573 32 1 4.9554 1.2972 5.5225 33 1 5.1316 0.0737 8.9916 34 1 5.0689 -0.8994 -0.5674 35 1 5.2266 -1.0092 1.2022 36 1 3.6338 -1.2193 0.4358 37 1 6.1532 1.3825 -0.4965 38 1 5.4700 2.6450 0.5560 39 1 7.3547 1.5743 1.5592 40 1 3.4490 0.5798 -1.4818 41 1 3.6990 2.2855 -0.9898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601769933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:07 Heat of formation + Delta-G solvation = -127.666218 kcal Electronic energy + Delta-G solvation = -22276.398365 eV Core-core repulsion = 18963.702611 eV Total energy + Delta-G solvation = -3312.695754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31909 -37.97782 -36.78709 -35.42368 -33.34377 -32.04681 -30.51811 -30.39692 -26.79874 -26.33132 -25.68641 -25.05997 -22.43391 -21.52516 -19.83034 -17.91295 -17.26241 -16.83074 -16.67548 -15.93561 -15.39141 -15.13192 -14.88860 -14.60602 -14.39328 -13.96140 -13.69386 -13.14055 -12.95718 -12.69861 -12.18243 -12.11566 -12.08212 -11.88244 -11.70976 -11.51454 -11.47058 -10.99078 -10.85692 -10.80024 -10.55283 -10.53568 -9.85927 -9.82308 -9.64153 -9.47912 -9.03249 -8.62324 -8.25265 -8.07700 -5.88635 -3.92635 3.38292 3.40654 3.43211 3.45983 3.49978 3.61308 4.22947 4.38265 4.53016 4.64607 4.91538 5.04379 5.12019 5.20945 5.24904 5.37210 5.44508 5.45802 5.46889 5.52605 5.59596 5.60611 5.71433 5.75919 5.88256 6.01927 6.29673 6.37281 6.40529 6.66895 6.90206 7.02898 7.08350 7.82731 7.98937 8.02018 8.15862 8.18858 8.48581 9.10298 9.20012 9.70096 11.22285 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021050 B = 0.005044 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.873611 B = 5549.578303 C = 6476.753056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.074 3.926 4 H 0.082 0.918 5 C 0.081 3.919 6 N -0.616 5.616 7 C 0.520 3.480 8 O -0.488 6.488 9 C -0.123 4.123 10 C 0.040 3.960 11 C -0.525 4.525 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.170 3.830 20 C -0.150 4.150 21 C 0.070 3.930 22 O -0.524 6.524 23 C -0.120 4.120 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.361 0.639 40 H 0.091 0.909 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 4.397 -21.640 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.015 3.985 4 H 0.100 0.900 5 C -0.043 4.043 6 N -0.355 5.355 7 C 0.309 3.691 8 O -0.359 6.359 9 C -0.163 4.163 10 C 0.002 3.998 11 C -0.564 4.564 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.085 3.915 20 C -0.208 4.208 21 C -0.009 4.009 22 O -0.327 6.327 23 C -0.158 4.158 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.206 0.794 40 H 0.109 0.891 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.532 3.435 -21.164 22.143 hybrid contribution -0.435 0.982 0.646 1.253 sum -5.967 4.416 -20.518 21.820 Atomic orbital electron populations 1.22821 0.81086 1.02935 0.99893 1.87993 1.19475 1.26582 1.94707 1.23262 0.94547 0.85488 0.95182 0.90003 1.22740 0.87759 0.97267 0.96542 1.48720 1.19331 1.62452 1.04967 1.21118 0.87076 0.78398 0.82476 1.90712 1.21090 1.39687 1.84375 1.21818 0.99248 1.01322 0.93929 1.18870 0.95259 0.97538 0.88132 1.21201 1.04342 1.39636 0.91211 0.92852 1.25013 0.95043 0.95304 0.98972 1.69996 1.18528 1.41784 1.22536 0.86677 0.80307 0.78744 0.82323 1.20310 1.21296 1.20327 1.20814 0.90373 0.96003 0.84360 1.22035 1.02560 0.94117 1.02069 1.22511 0.91691 0.96525 0.90205 1.87119 1.29547 1.66169 1.49824 1.22816 0.92915 1.02601 0.97473 0.93754 0.94175 0.89586 0.91068 0.90103 0.91038 0.90957 0.95912 0.95847 0.92977 0.93127 0.90187 0.91973 0.94000 0.94460 0.79418 0.89059 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.87 101.05 1.10 1.34 16 2 O -0.37 -4.29 9.83 -35.23 -0.35 -4.64 16 3 C 0.07 0.74 3.51 -24.58 -0.09 0.65 16 4 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 5 C 0.08 1.00 6.43 -2.47 -0.02 0.99 16 6 N -0.62 -10.10 2.83 -155.73 -0.44 -10.54 16 7 C 0.52 11.07 7.32 -10.98 -0.08 10.99 16 8 O -0.49 -12.13 11.76 -18.86 -0.22 -12.36 16 9 C -0.12 -2.73 4.65 -27.89 -0.13 -2.86 16 10 C 0.04 1.12 4.26 -27.89 -0.12 1.00 16 11 C -0.53 -15.44 9.11 -34.44 -0.31 -15.76 16 12 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -28.14 13.29 55.43 0.74 -27.40 16 15 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.17 2.37 0.79 -130.84 -0.10 2.27 16 20 C -0.15 -2.30 8.22 37.16 0.31 -2.00 16 21 C 0.07 0.94 5.99 37.16 0.22 1.16 16 22 O -0.52 -8.88 9.41 -59.65 -0.56 -9.44 16 23 C -0.12 -1.17 5.75 -24.90 -0.14 -1.32 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.03 7.48 -51.93 -0.39 0.64 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.07 1.51 7.85 -51.93 -0.41 1.10 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.54 6.32 -51.93 -0.33 1.21 16 36 H 0.06 0.99 7.45 -51.93 -0.39 0.60 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.36 4.57 9.12 45.56 0.42 4.98 16 40 H 0.09 0.82 7.83 -51.93 -0.41 0.41 16 41 H 0.09 0.66 7.86 -51.93 -0.41 0.25 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -36.94 329.47 -6.43 -43.38 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.08 Total: 0.80 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 0.54 Total: -1.90 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.30 Total: -37.94 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -1.13 Total: -26.43 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.94 -6.43 -43.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601769933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.289 kcal (2) G-P(sol) polarization free energy of solvation -36.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds