Wall clock time and date at job start Mon Mar 30 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 H 1.09001 * 110.88663 * 330.70442 * 3 2 1 5 5 C 1.54909 * 110.99948 * 94.58191 * 3 2 1 6 6 N 1.47528 * 104.78251 * 81.08840 * 5 3 2 7 7 C 1.34780 * 125.63656 * 204.07848 * 6 5 3 8 8 O 1.21277 * 119.99912 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99841 * 0.04561 * 7 6 5 10 10 C 1.52991 * 109.47110 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47510 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99814 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00385 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00044 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00065 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47380 * 60.00593 * 15 13 11 17 17 H 1.48508 * 109.47105 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47481 * 300.00121 * 15 13 11 19 19 C 1.47016 * 108.71551 * 24.11792 * 6 5 3 20 20 C 1.53002 * 110.01386 * 239.45216 * 19 6 5 21 21 C 1.53006 * 109.88668 * 118.35912 * 19 6 5 22 22 O 1.42902 * 109.46879 * 62.18778 * 21 19 6 23 23 C 1.54326 * 107.27254 * 358.94449 * 19 6 5 24 24 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 25 25 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 26 26 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08999 * 110.36339 * 199.90182 * 5 3 2 28 28 H 1.08998 * 110.37290 * 322.22338 * 5 3 2 29 29 H 1.08999 * 109.46936 * 299.99544 * 9 7 6 30 30 H 1.08998 * 109.47123 * 59.99594 * 9 7 6 31 31 H 1.09000 * 109.47169 * 300.00137 * 10 9 7 32 32 H 1.09006 * 109.47481 * 59.99603 * 10 9 7 33 33 H 0.97004 * 119.99931 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.47572 * 177.88238 * 20 19 6 35 35 H 1.08999 * 109.46758 * 297.88850 * 20 19 6 36 36 H 1.09006 * 109.46755 * 57.88299 * 20 19 6 37 37 H 1.09000 * 109.47319 * 182.19378 * 21 19 6 38 38 H 1.09003 * 109.46735 * 302.19351 * 21 19 6 39 39 H 0.96699 * 113.99405 * 180.02562 * 22 21 19 40 40 H 1.09005 * 110.71686 * 219.44607 * 23 19 6 41 41 H 1.08991 * 110.87523 * 96.24452 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3570 2.0217 -0.4983 5 6 2.3417 1.7656 1.4416 6 7 3.6273 1.1150 1.7582 7 6 4.0837 0.8387 2.9959 8 8 5.1605 0.2992 3.1387 9 6 3.2559 1.1996 4.2023 10 6 3.9969 0.7803 5.4734 11 6 3.1694 1.1418 6.6798 12 1 2.2105 1.6222 6.5527 13 6 3.6359 0.8583 7.9459 14 7 4.8033 0.2728 8.1008 15 14 2.6097 1.3058 9.4413 16 1 1.3039 0.6018 9.3743 17 1 3.3292 0.8988 10.6751 18 1 2.3807 2.7728 9.4636 19 6 4.3285 0.8188 0.5005 20 6 4.5828 -0.6854 0.3844 21 6 5.6574 1.5760 0.4547 22 8 6.4937 1.1353 1.5263 23 6 3.4174 1.2877 -0.6535 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.4458 2.8499 1.4791 28 1 1.5673 1.4339 2.1332 29 1 3.0872 2.2764 4.2182 30 1 2.2977 0.6824 4.1534 31 1 4.1654 -0.2965 5.4573 32 1 4.9554 1.2972 5.5225 33 1 5.1316 0.0737 8.9916 34 1 5.0689 -0.8994 -0.5674 35 1 5.2266 -1.0092 1.2022 36 1 3.6338 -1.2193 0.4358 37 1 6.1532 1.3825 -0.4965 38 1 5.4700 2.6450 0.5560 39 1 7.3547 1.5743 1.5592 40 1 3.4490 0.5798 -1.4818 41 1 3.6990 2.2855 -0.9898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601769933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:06 Heat of formation + Delta-G solvation = -155.645930 kcal Electronic energy + Delta-G solvation = -22277.611657 eV Core-core repulsion = 18963.702611 eV Total energy + Delta-G solvation = -3313.909045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47693 -39.21496 -37.96664 -36.55472 -35.53378 -33.53880 -32.35196 -31.43760 -27.78857 -27.65308 -27.22217 -26.09555 -24.17365 -22.69575 -21.24958 -19.32316 -18.67810 -18.21013 -17.79321 -17.44691 -16.66508 -16.48366 -16.33700 -15.82035 -15.61945 -15.33923 -14.96431 -14.49865 -14.25768 -14.12088 -13.66308 -13.50977 -13.24204 -13.15241 -13.08893 -12.76948 -12.72493 -12.50105 -12.41322 -12.33535 -11.90881 -11.79579 -11.59572 -11.49625 -11.30699 -10.76922 -10.61240 -10.56624 -10.28999 -9.38252 -8.17903 -6.32961 1.40202 1.45705 1.53507 1.96984 2.14429 2.43225 2.84380 3.14159 3.29826 3.53871 3.71712 4.05074 4.10902 4.20655 4.28321 4.43322 4.47896 4.48715 4.50683 4.56848 4.63897 4.65346 4.70427 4.77341 4.81319 4.93566 4.94257 5.01567 5.05738 5.12567 5.40999 5.47421 5.62887 5.75399 5.84913 6.17557 6.35404 6.72686 6.85939 7.03712 7.36882 7.57962 8.94721 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021050 B = 0.005044 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.873611 B = 5549.578303 C = 6476.753056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.079 3.921 4 H 0.125 0.875 5 C 0.067 3.933 6 N -0.612 5.612 7 C 0.514 3.486 8 O -0.538 6.538 9 C -0.110 4.110 10 C 0.050 3.950 11 C -0.546 4.546 12 H 0.073 0.927 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.976 3.024 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.261 1.261 19 C 0.156 3.844 20 C -0.142 4.142 21 C 0.065 3.935 22 O -0.564 6.564 23 C -0.108 4.108 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.086 0.914 31 H -0.024 1.024 32 H -0.019 1.019 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.373 0.627 40 H 0.104 0.896 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 6.544 -23.531 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.020 3.980 4 H 0.142 0.858 5 C -0.055 4.055 6 N -0.348 5.348 7 C 0.303 3.697 8 O -0.414 6.414 9 C -0.150 4.150 10 C 0.012 3.988 11 C -0.583 4.583 12 H 0.091 0.909 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.800 3.200 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.185 1.185 19 C 0.072 3.928 20 C -0.200 4.200 21 C -0.014 4.014 22 O -0.368 6.368 23 C -0.145 4.145 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.104 0.896 31 H -0.005 1.005 32 H 0.000 1.000 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.219 0.781 40 H 0.122 0.878 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.198 5.612 -23.122 25.166 hybrid contribution 0.392 0.276 1.159 1.255 sum -7.806 5.889 -21.963 24.041 Atomic orbital electron populations 1.22967 0.79676 1.03407 1.01123 1.87970 1.21208 1.27902 1.94733 1.23399 0.95380 0.85784 0.93388 0.85751 1.23163 0.85420 0.98479 0.98465 1.48577 1.20922 1.61007 1.04254 1.20814 0.86371 0.78449 0.84029 1.90700 1.23056 1.42140 1.85506 1.21541 0.98940 1.02510 0.92025 1.18610 0.94300 0.94093 0.91772 1.21661 1.05099 1.39788 0.91793 0.90920 1.26164 0.96320 0.94779 1.03099 1.70190 1.20890 1.43061 1.23586 0.85344 0.78444 0.79257 0.76999 1.18733 1.21094 1.18541 1.21231 0.91830 0.95076 0.84707 1.21932 1.01024 0.95608 1.01452 1.22726 0.91110 0.96977 0.90561 1.87107 1.30826 1.67205 1.51710 1.22868 0.91372 1.04660 0.95640 0.93700 0.91637 0.89710 0.88486 0.90784 0.88975 0.89586 1.00508 1.00010 0.92818 0.90481 0.95052 0.93103 0.90932 0.93160 0.78055 0.87751 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.87 113.37 1.23 1.57 16 2 O -0.40 -8.23 9.83 -148.98 -1.46 -9.70 16 3 C 0.08 1.24 3.51 31.99 0.11 1.36 16 4 H 0.12 0.99 7.86 -2.39 -0.02 0.98 16 5 C 0.07 1.48 6.43 86.84 0.56 2.04 16 6 N -0.61 -19.63 2.83 -765.00 -2.16 -21.79 16 7 C 0.51 22.73 7.32 87.66 0.64 23.37 16 8 O -0.54 -28.73 11.76 20.33 0.24 -28.49 16 9 C -0.11 -5.02 4.65 29.84 0.14 -4.88 16 10 C 0.05 2.99 4.26 29.85 0.13 3.11 16 11 C -0.55 -32.69 9.11 25.60 0.23 -32.46 16 12 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 13 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 14 N -0.94 -61.56 13.29 21.45 0.28 -61.28 16 15 Si 0.98 45.61 29.54 68.60 2.03 47.64 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 19 C 0.16 4.11 0.79 3.96 0.00 4.12 16 20 C -0.14 -4.40 8.22 71.98 0.59 -3.81 16 21 C 0.06 1.63 5.99 71.98 0.43 2.06 16 22 O -0.56 -19.78 9.41 -125.63 -1.18 -20.96 16 23 C -0.11 -1.64 5.75 31.78 0.18 -1.46 16 24 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.07 0.58 8.11 -2.38 -0.02 0.56 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.73 7.48 -2.39 -0.02 1.71 16 29 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 30 H 0.09 3.62 7.85 -2.39 -0.02 3.60 16 31 H -0.02 -1.60 8.10 -2.39 -0.02 -1.62 16 32 H -0.02 -1.24 8.10 -2.38 -0.02 -1.26 16 33 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.03 1.27 6.32 -2.39 -0.02 1.25 16 36 H 0.05 1.64 7.45 -2.38 -0.02 1.62 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.37 9.94 9.12 -74.06 -0.68 9.26 16 40 H 0.10 1.39 7.83 -2.38 -0.02 1.37 16 41 H 0.12 1.09 7.86 -2.39 -0.02 1.07 16 Total: -1.00 -86.98 329.47 2.79 -84.19 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.33 Total: 15.28 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 4.71 Total: -4.89 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.88 Total: -83.07 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -2.41 Total: -59.15 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -86.98 2.79 -84.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601769933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.452 kcal (2) G-P(sol) polarization free energy of solvation -86.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds