Wall clock time and date at job start Mon Mar 30 2020 04:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99489 * 2 1 4 4 O 1.21584 * 120.00638 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99561 * 180.02562 * 3 2 1 6 6 C 1.46496 * 119.99740 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.46976 * 173.88050 * 6 5 3 8 8 H 1.08994 * 109.70784 * 308.71154 * 7 6 5 9 9 C 1.53291 * 109.68069 * 188.17384 * 7 6 5 10 10 O 1.42956 * 109.26522 * 187.94737 * 9 7 6 11 11 C 1.43060 * 114.10845 * 62.55108 * 10 9 7 12 12 C 1.53297 * 109.25256 * 297.45929 * 11 10 9 13 13 N 1.47151 * 108.38620 * 52.30397 * 12 11 10 14 14 C 1.34769 * 120.98461 * 129.44118 * 13 12 11 15 15 O 1.21690 * 120.00220 * 185.76935 * 14 13 12 16 16 C 1.46375 * 119.99763 * 5.77558 * 14 13 12 17 17 H 1.07994 * 120.00151 * 6.63921 * 16 14 13 18 18 C 1.40054 * 119.99842 * 186.63610 * 16 14 13 19 19 N 1.30671 * 120.00270 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99764 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47129 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46766 * 120.00608 * 20 18 16 23 23 H 1.48501 * 109.47314 * 240.00124 * 20 18 16 24 24 H 1.09005 * 109.47178 * 60.00272 * 1 2 3 25 25 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47451 * 300.00123 * 1 2 3 27 27 H 0.96994 * 119.99807 * 180.02562 * 2 1 3 28 28 H 0.96998 * 119.99777 * 359.97438 * 5 3 2 29 29 H 1.08995 * 109.47726 * 53.87891 * 6 5 3 30 30 H 1.08997 * 109.47069 * 293.87768 * 6 5 3 31 31 H 1.08998 * 109.51506 * 307.89807 * 9 7 6 32 32 H 1.09004 * 109.51399 * 67.99621 * 9 7 6 33 33 H 1.09006 * 109.49606 * 177.52893 * 11 10 9 34 34 H 1.08997 * 109.54083 * 57.41922 * 11 10 9 35 35 H 1.09004 * 109.67960 * 292.58410 * 12 11 10 36 36 H 1.08999 * 109.71677 * 172.04597 * 12 11 10 37 37 H 0.96996 * 120.00327 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7163 2.1605 0.1531 8 1 5.8841 1.5061 1.0084 9 6 6.4660 3.4816 0.3588 10 8 7.8738 3.2369 0.3153 11 6 8.3406 2.7318 -0.9391 12 6 7.6869 1.3722 -1.2113 13 7 6.2299 1.5208 -1.0686 14 6 5.3906 1.0845 -2.0286 15 8 4.1978 1.3095 -1.9423 16 6 5.9139 0.3398 -3.1750 17 1 6.9530 0.0468 -3.1999 18 6 5.0669 0.0071 -4.2396 19 7 3.8096 0.3620 -4.2098 20 14 5.7349 -0.9426 -5.7029 21 1 7.1785 -1.2217 -5.4947 22 1 4.9978 -2.2245 -5.8392 23 1 5.5592 -0.1369 -6.9380 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9500 -0.8400 -0.0004 28 1 3.9716 0.3272 -0.0005 29 1 3.8765 3.0530 0.8306 30 1 4.0401 2.9592 -0.9392 31 1 6.1936 4.1817 -0.4310 32 1 6.1997 3.9043 1.3276 33 1 9.4237 2.6144 -0.9036 34 1 8.0757 3.4288 -1.7341 35 1 8.0531 0.6384 -0.4932 36 1 7.9251 1.0457 -2.2236 37 1 3.2231 0.1319 -4.9473 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601892969.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:30 Heat of formation + Delta-G solvation = -65.384497 kcal Electronic energy + Delta-G solvation = -22413.859645 eV Core-core repulsion = 19000.324285 eV Total energy + Delta-G solvation = -3413.535359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70969 -38.67701 -36.92001 -34.36434 -33.65422 -33.29891 -32.44682 -31.13962 -27.79150 -26.44215 -26.01357 -24.50409 -22.15177 -21.52088 -20.05737 -19.15636 -17.81351 -16.63048 -16.10063 -15.83859 -15.44081 -15.19498 -14.82223 -14.54807 -14.38695 -14.08728 -13.69827 -13.43674 -12.99061 -12.97063 -12.43731 -11.86223 -11.80997 -11.72162 -11.63552 -11.34846 -11.14527 -11.01189 -10.79363 -10.37118 -10.28432 -10.08287 -9.65024 -9.36292 -8.98449 -8.50966 -7.87602 -7.32427 -7.06113 -6.24166 -4.74112 3.04148 3.13835 3.16608 3.54920 3.93165 4.11132 4.23682 4.31528 4.46056 5.00906 5.35653 5.40345 5.46332 5.49212 5.57655 5.60418 5.74978 5.83483 5.93469 5.97792 6.05921 6.16852 6.22223 6.30295 6.41823 6.94608 7.14066 7.32287 7.34983 7.40535 7.51695 7.72995 7.98837 8.20696 8.90987 8.92361 9.26212 9.54472 10.45338 10.63697 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.011611 B = 0.010064 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.888739 B = 2781.518860 C = 4913.083175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.756 5.756 3 C 0.713 3.287 4 O -0.616 6.616 5 N -0.688 5.688 6 C 0.168 3.832 7 C 0.107 3.893 8 H 0.061 0.939 9 C 0.058 3.942 10 O -0.387 6.387 11 C 0.044 3.956 12 C 0.091 3.909 13 N -0.644 5.644 14 C 0.545 3.455 15 O -0.540 6.540 16 C -0.544 4.544 17 H 0.069 0.931 18 C 0.090 3.910 19 N -0.761 5.761 20 Si 0.903 3.097 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.392 0.608 28 H 0.390 0.610 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 -1.382 6.623 7.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.411 5.411 3 C 0.413 3.587 4 O -0.497 6.497 5 N -0.340 5.340 6 C 0.044 3.956 7 C 0.001 3.999 8 H 0.079 0.921 9 C -0.021 4.021 10 O -0.305 6.305 11 C -0.033 4.033 12 C -0.033 4.033 13 N -0.386 5.386 14 C 0.351 3.649 15 O -0.421 6.421 16 C -0.581 4.581 17 H 0.087 0.913 18 C -0.131 4.131 19 N -0.389 5.389 20 Si 0.728 3.272 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.224 0.776 28 H 0.224 0.776 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.585 -0.233 6.710 7.194 hybrid contribution 0.783 -1.447 -1.202 2.038 sum 3.368 -1.681 5.508 6.671 Atomic orbital electron populations 1.21192 0.79514 1.00775 1.01478 1.44752 1.06900 1.07444 1.82026 1.15719 0.82026 0.83573 0.77357 1.90800 1.68407 1.30567 1.59962 1.44677 1.03715 1.08919 1.76641 1.20889 0.87257 0.86156 1.01321 1.21779 0.94092 0.94390 0.89611 0.92130 1.22851 0.81181 0.95895 1.02167 1.87886 1.22542 1.85320 1.34791 1.23063 0.98603 0.95644 0.86010 1.22057 0.82508 0.95623 1.03139 1.48421 1.05377 1.65065 1.19705 1.18312 0.85433 0.79665 0.81479 1.90806 1.14963 1.60337 1.75963 1.20971 0.96873 1.37319 1.02889 0.91279 1.25675 0.94325 0.94421 0.98658 1.70006 1.04270 1.35211 1.29417 0.86388 0.79822 0.79596 0.81402 1.18853 1.20254 1.20255 0.92933 0.91663 0.93280 0.77552 0.77609 0.93819 0.89778 0.92652 0.88645 0.88886 0.92927 0.93207 0.88122 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.77 10.70 59.85 0.64 2.41 16 2 N -0.76 -13.69 5.72 -72.06 -0.41 -14.10 16 3 C 0.71 15.92 8.27 -86.91 -0.72 15.20 16 4 O -0.62 -15.91 16.33 5.29 0.09 -15.82 16 5 N -0.69 -14.48 3.11 -65.23 -0.20 -14.69 16 6 C 0.17 3.44 4.31 -4.04 -0.02 3.43 16 7 C 0.11 1.92 3.13 -67.42 -0.21 1.71 16 8 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 9 C 0.06 0.91 6.28 37.31 0.23 1.14 16 10 O -0.39 -6.24 10.75 -35.23 -0.38 -6.62 16 11 C 0.04 0.67 6.99 37.31 0.26 0.93 16 12 C 0.09 1.57 6.48 -3.53 -0.02 1.54 16 13 N -0.64 -13.18 3.02 -166.39 -0.50 -13.69 16 14 C 0.55 13.68 7.01 -12.99 -0.09 13.59 16 15 O -0.54 -14.84 8.75 5.20 0.05 -14.79 16 16 C -0.54 -13.94 8.74 -35.63 -0.31 -14.25 16 17 H 0.07 1.64 5.96 -52.49 -0.31 1.33 16 18 C 0.09 2.32 5.50 -17.36 -0.10 2.23 16 19 N -0.76 -21.34 11.85 55.55 0.66 -20.68 16 20 Si 0.90 19.13 29.56 -169.99 -5.02 14.10 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.39 6.19 8.84 -40.82 -0.36 5.83 16 28 H 0.39 7.97 7.66 -40.82 -0.31 7.65 16 29 H 0.04 0.83 8.11 -51.93 -0.42 0.41 16 30 H 0.08 2.08 6.59 -51.93 -0.34 1.74 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.79 5.61 -51.93 -0.29 1.50 16 37 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -33.60 302.15 -6.49 -40.09 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -4.98 Total: 13.72 kcal Atomic # 6 Polarization: 28.26 SS G_CDS: -0.33 Total: 27.92 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.46 Total: -63.16 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.25 Total: -37.23 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.60 -6.49 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601892969.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.293 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds