Wall clock time and date at job start Mon Mar 30 2020 04:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99489 * 2 1 4 4 O 1.21584 * 120.00638 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99561 * 180.02562 * 3 2 1 6 6 C 1.46496 * 119.99740 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.46976 * 173.88050 * 6 5 3 8 8 H 1.08994 * 109.70784 * 308.71154 * 7 6 5 9 9 C 1.53291 * 109.68069 * 188.17384 * 7 6 5 10 10 O 1.42956 * 109.26522 * 187.94737 * 9 7 6 11 11 C 1.43060 * 114.10845 * 62.55108 * 10 9 7 12 12 C 1.53297 * 109.25256 * 297.45929 * 11 10 9 13 13 N 1.47151 * 108.38620 * 52.30397 * 12 11 10 14 14 C 1.34769 * 120.98461 * 129.44118 * 13 12 11 15 15 O 1.21690 * 120.00220 * 185.76935 * 14 13 12 16 16 C 1.46375 * 119.99763 * 5.77558 * 14 13 12 17 17 H 1.07994 * 120.00151 * 6.63921 * 16 14 13 18 18 C 1.40054 * 119.99842 * 186.63610 * 16 14 13 19 19 N 1.30671 * 120.00270 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99764 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47129 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46766 * 120.00608 * 20 18 16 23 23 H 1.48501 * 109.47314 * 240.00124 * 20 18 16 24 24 H 1.09005 * 109.47178 * 60.00272 * 1 2 3 25 25 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47451 * 300.00123 * 1 2 3 27 27 H 0.96994 * 119.99807 * 180.02562 * 2 1 3 28 28 H 0.96998 * 119.99777 * 359.97438 * 5 3 2 29 29 H 1.08995 * 109.47726 * 53.87891 * 6 5 3 30 30 H 1.08997 * 109.47069 * 293.87768 * 6 5 3 31 31 H 1.08998 * 109.51506 * 307.89807 * 9 7 6 32 32 H 1.09004 * 109.51399 * 67.99621 * 9 7 6 33 33 H 1.09006 * 109.49606 * 177.52893 * 11 10 9 34 34 H 1.08997 * 109.54083 * 57.41922 * 11 10 9 35 35 H 1.09004 * 109.67960 * 292.58410 * 12 11 10 36 36 H 1.08999 * 109.71677 * 172.04597 * 12 11 10 37 37 H 0.96996 * 120.00327 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7163 2.1605 0.1531 8 1 5.8841 1.5061 1.0084 9 6 6.4660 3.4816 0.3588 10 8 7.8738 3.2369 0.3153 11 6 8.3406 2.7318 -0.9391 12 6 7.6869 1.3722 -1.2113 13 7 6.2299 1.5208 -1.0686 14 6 5.3906 1.0845 -2.0286 15 8 4.1978 1.3095 -1.9423 16 6 5.9139 0.3398 -3.1750 17 1 6.9530 0.0468 -3.1999 18 6 5.0669 0.0071 -4.2396 19 7 3.8096 0.3620 -4.2098 20 14 5.7349 -0.9426 -5.7029 21 1 7.1785 -1.2217 -5.4947 22 1 4.9978 -2.2245 -5.8392 23 1 5.5592 -0.1369 -6.9380 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9500 -0.8400 -0.0004 28 1 3.9716 0.3272 -0.0005 29 1 3.8765 3.0530 0.8306 30 1 4.0401 2.9592 -0.9392 31 1 6.1936 4.1817 -0.4310 32 1 6.1997 3.9043 1.3276 33 1 9.4237 2.6144 -0.9036 34 1 8.0757 3.4288 -1.7341 35 1 8.0531 0.6384 -0.4932 36 1 7.9251 1.0457 -2.2236 37 1 3.2231 0.1319 -4.9473 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601892969.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:29 Heat of formation + Delta-G solvation = -92.480841 kcal Electronic energy + Delta-G solvation = -22415.034630 eV Core-core repulsion = 19000.324285 eV Total energy + Delta-G solvation = -3414.710345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31371 -40.28843 -38.53979 -36.02142 -35.31903 -34.92481 -34.39566 -32.60263 -29.35897 -28.07395 -27.62401 -25.92911 -23.65140 -23.08441 -21.74391 -20.85091 -19.45309 -18.33199 -17.69980 -17.51553 -16.91304 -16.67680 -16.45405 -16.07182 -15.80738 -15.68312 -15.22553 -15.05923 -14.67223 -14.62183 -14.00416 -13.50432 -13.31674 -13.23753 -13.03426 -12.98641 -12.82556 -12.67976 -12.18006 -12.07163 -11.88799 -11.56736 -11.22358 -11.03433 -10.91813 -10.14655 -9.50446 -9.20590 -8.75878 -8.16792 -6.74492 1.37565 1.40605 1.54691 1.98882 2.21981 2.49293 2.57977 2.64540 2.94074 3.52284 3.70128 3.91034 3.99918 4.08420 4.27154 4.39335 4.44445 4.50219 4.64062 4.67742 4.70400 4.76551 4.90521 4.92193 5.04893 5.26584 5.39640 5.67972 5.70907 5.84101 6.11564 6.15507 6.19961 6.40187 6.95571 7.29425 7.44884 7.83988 8.54572 8.73940 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.011611 B = 0.010064 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.888739 B = 2781.518860 C = 4913.083175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.747 5.747 3 C 0.700 3.300 4 O -0.658 6.658 5 N -0.682 5.682 6 C 0.176 3.824 7 C 0.111 3.889 8 H 0.080 0.920 9 C 0.063 3.937 10 O -0.386 6.386 11 C 0.049 3.951 12 C 0.087 3.913 13 N -0.648 5.648 14 C 0.535 3.465 15 O -0.572 6.572 16 C -0.565 4.565 17 H 0.085 0.915 18 C 0.039 3.961 19 N -0.813 5.813 20 Si 0.981 3.019 21 H -0.248 1.248 22 H -0.274 1.274 23 H -0.278 1.278 24 H 0.029 0.971 25 H 0.111 0.889 26 H 0.053 0.947 27 H 0.405 0.595 28 H 0.393 0.607 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.848 -2.484 7.321 9.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.402 5.402 3 C 0.400 3.600 4 O -0.543 6.543 5 N -0.333 5.333 6 C 0.051 3.949 7 C 0.007 3.993 8 H 0.098 0.902 9 C -0.015 4.015 10 O -0.304 6.304 11 C -0.029 4.029 12 C -0.036 4.036 13 N -0.388 5.388 14 C 0.340 3.660 15 O -0.455 6.455 16 C -0.602 4.602 17 H 0.102 0.898 18 C -0.176 4.176 19 N -0.443 5.443 20 Si 0.802 3.198 21 H -0.171 1.171 22 H -0.199 1.199 23 H -0.204 1.204 24 H 0.048 0.952 25 H 0.129 0.871 26 H 0.072 0.928 27 H 0.239 0.761 28 H 0.227 0.773 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.606 -1.365 7.441 8.857 hybrid contribution 0.190 -1.088 -1.359 1.752 sum 4.796 -2.454 6.081 8.124 Atomic orbital electron populations 1.21406 0.77728 1.03523 1.00552 1.44756 1.08107 1.06713 1.80667 1.16090 0.82421 0.84145 0.77375 1.90754 1.69222 1.32360 1.61984 1.44637 1.03501 1.09186 1.75936 1.20748 0.89175 0.85814 0.99189 1.21894 0.92482 0.95935 0.89010 0.90182 1.22873 0.80975 0.94168 1.03526 1.87903 1.22211 1.85155 1.35144 1.23142 1.00475 0.93809 0.85431 1.22246 0.80446 0.97603 1.03295 1.48266 1.06601 1.64376 1.19558 1.18498 0.85505 0.79654 0.82360 1.90800 1.16494 1.61200 1.77009 1.21438 0.97729 1.37562 1.03451 0.89752 1.26683 0.94295 0.94988 1.01666 1.70179 1.06056 1.37420 1.30650 0.85206 0.79812 0.77748 0.77010 1.17081 1.19945 1.20379 0.95239 0.87067 0.92824 0.76128 0.77339 0.92357 0.94766 0.93904 0.85459 0.85103 0.93929 0.91388 0.88943 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.35 10.70 127.77 1.37 4.72 16 2 N -0.75 -27.03 5.72 -500.17 -2.86 -29.89 16 3 C 0.70 31.96 8.27 179.05 1.48 33.44 16 4 O -0.66 -35.13 16.33 -3.98 -0.06 -35.20 16 5 N -0.68 -29.22 3.11 -478.54 -1.49 -30.71 16 6 C 0.18 7.31 4.31 86.38 0.37 7.68 16 7 C 0.11 3.90 3.13 44.97 0.14 4.04 16 8 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 9 C 0.06 1.86 6.28 72.08 0.45 2.32 16 10 O -0.39 -11.25 10.75 -148.98 -1.60 -12.85 16 11 C 0.05 1.33 6.99 72.08 0.50 1.83 16 12 C 0.09 2.82 6.48 86.35 0.56 3.38 16 13 N -0.65 -26.09 3.02 -798.57 -2.41 -28.50 16 14 C 0.54 27.23 7.01 86.36 0.61 27.83 16 15 O -0.57 -32.51 8.75 -4.32 -0.04 -32.55 16 16 C -0.57 -29.01 8.74 24.83 0.22 -28.80 16 17 H 0.08 3.93 5.96 -2.91 -0.02 3.91 16 18 C 0.04 2.04 5.50 85.31 0.47 2.51 16 19 N -0.81 -46.95 11.85 21.84 0.26 -46.69 16 20 Si 0.98 39.20 29.56 68.60 2.03 41.23 16 21 H -0.25 -9.11 7.11 99.48 0.71 -8.41 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 24 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.40 12.53 8.84 -92.71 -0.82 11.71 16 28 H 0.39 16.16 7.66 -92.71 -0.71 15.45 16 29 H 0.06 2.23 8.11 -2.39 -0.02 2.21 16 30 H 0.03 1.77 6.59 -2.39 -0.02 1.76 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.13 2.98 8.14 -2.38 -0.02 2.96 16 33 H 0.13 2.61 8.14 -2.38 -0.02 2.59 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 3.14 5.61 -2.39 -0.01 3.12 16 37 H 0.27 14.42 8.29 -92.71 -0.77 13.65 16 Total: -1.00 -75.37 302.15 -0.43 -75.80 By element: Atomic # 1 Polarization: 40.82 SS G_CDS: -0.42 Total: 40.40 kcal Atomic # 6 Polarization: 52.79 SS G_CDS: 6.17 Total: 58.95 kcal Atomic # 7 Polarization: -129.29 SS G_CDS: -6.50 Total: -135.79 kcal Atomic # 8 Polarization: -78.89 SS G_CDS: -1.70 Total: -80.59 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -75.37 -0.43 -75.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601892969.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.683 kcal (2) G-P(sol) polarization free energy of solvation -75.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds