Wall clock time and date at job start Mon Mar 30 2020 04:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34788 * 119.99987 * 2 1 4 4 O 1.21580 * 119.99556 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99588 * 180.02562 * 3 2 1 6 6 C 1.46497 * 119.99446 * 180.27525 * 5 3 2 7 7 C 1.52997 * 109.47100 * 185.44829 * 6 5 3 8 8 H 1.08996 * 109.68165 * 45.75850 * 7 6 5 9 9 C 1.53297 * 109.68249 * 166.27162 * 7 6 5 10 10 O 1.42968 * 109.21923 * 172.02385 * 9 7 6 11 11 C 1.42952 * 114.16903 * 297.41966 * 10 9 7 12 12 C 1.53295 * 109.22410 * 62.58310 * 11 10 9 13 13 N 1.47151 * 109.68550 * 285.23793 * 7 6 5 14 14 C 1.34785 * 120.97717 * 9.71129 * 13 7 6 15 15 O 1.21682 * 119.99969 * 4.37569 * 14 13 7 16 16 C 1.46376 * 119.99691 * 184.37454 * 14 13 7 17 17 H 1.07995 * 119.99870 * 351.92136 * 16 14 13 18 18 C 1.40047 * 119.99687 * 171.91267 * 16 14 13 19 19 N 1.30669 * 120.00182 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99957 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46952 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46861 * 120.00332 * 20 18 16 23 23 H 1.48496 * 109.47123 * 240.00443 * 20 18 16 24 24 H 1.09002 * 109.47132 * 59.99618 * 1 2 3 25 25 H 1.08990 * 109.46950 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46556 * 300.00062 * 1 2 3 27 27 H 0.96993 * 120.00432 * 180.02562 * 2 1 3 28 28 H 0.96993 * 120.00285 * 359.97438 * 5 3 2 29 29 H 1.08996 * 109.47347 * 305.44876 * 6 5 3 30 30 H 1.08999 * 109.47669 * 65.44799 * 6 5 3 31 31 H 1.08991 * 109.51623 * 291.94754 * 9 7 6 32 32 H 1.09003 * 109.51168 * 52.05596 * 9 7 6 33 33 H 1.09011 * 109.51237 * 182.50545 * 11 10 9 34 34 H 1.09004 * 109.51834 * 302.60572 * 11 10 9 35 35 H 1.09008 * 109.67854 * 67.41970 * 12 11 10 36 36 H 1.09001 * 109.68404 * 187.93509 * 12 11 10 37 37 H 0.97003 * 120.00051 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4359 0.0056 7 6 5.7177 2.1603 -0.1334 8 1 5.8847 1.4295 -0.9245 9 6 6.4531 3.4626 -0.4699 10 8 7.8634 3.2345 -0.4145 11 6 8.3447 2.8557 0.8772 12 6 7.7061 1.5224 1.2828 13 7 6.2466 1.6432 1.1387 14 6 5.4187 1.2921 2.1427 15 8 4.2136 1.3250 1.9773 16 6 5.9693 0.8711 3.4320 17 1 7.0326 0.7160 3.5403 18 6 5.1173 0.6697 4.5250 19 7 3.8307 0.8570 4.3938 20 14 5.8198 0.1317 6.1702 21 1 7.2936 -0.0105 6.0564 22 1 5.4994 1.1504 7.2021 23 1 5.2250 -1.1719 6.5600 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.9500 -0.8399 -0.0004 28 1 3.9716 0.3272 -0.0005 29 1 3.8843 3.0528 -0.8283 30 1 4.0314 2.9594 0.9430 31 1 6.1762 3.7885 -1.4724 32 1 6.1794 4.2322 0.2518 33 1 9.4286 2.7450 0.8438 34 1 8.0793 3.6234 1.6042 35 1 8.0739 0.7270 0.6344 36 1 7.9559 1.2960 2.3194 37 1 3.2406 0.7171 5.1508 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601892970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:32 Heat of formation + Delta-G solvation = -67.978516 kcal Electronic energy + Delta-G solvation = -22351.675455 eV Core-core repulsion = 18938.027610 eV Total energy + Delta-G solvation = -3413.647844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.68386 -38.70628 -36.90198 -34.40505 -33.68470 -33.28304 -32.45623 -31.14487 -27.76602 -26.45640 -26.02493 -24.52420 -22.14594 -21.53960 -20.07655 -19.11436 -17.82409 -16.65492 -16.09937 -15.85519 -15.50500 -15.16777 -14.80956 -14.55175 -14.40556 -14.08672 -13.71531 -13.45188 -13.01101 -12.88151 -12.43983 -11.91757 -11.81464 -11.78074 -11.57734 -11.34970 -11.12786 -11.04135 -10.79985 -10.35314 -10.28236 -10.03632 -9.63678 -9.38794 -8.96627 -8.53961 -7.87910 -7.28457 -7.16367 -6.24078 -4.73279 3.05228 3.14551 3.17436 3.52499 3.93670 4.11322 4.21733 4.32092 4.46371 4.99662 5.35619 5.40100 5.45431 5.50432 5.56135 5.59715 5.74155 5.83663 5.91460 5.97613 6.06082 6.15313 6.22267 6.30198 6.41480 6.92750 7.10942 7.33498 7.36857 7.41547 7.49698 7.70276 7.99968 8.20904 8.88757 8.93467 9.26890 9.51870 10.46463 10.64735 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.009513 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.484898 B = 2942.736096 C = 4986.475021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.757 5.757 3 C 0.713 3.287 4 O -0.614 6.614 5 N -0.688 5.688 6 C 0.167 3.833 7 C 0.107 3.893 8 H 0.060 0.940 9 C 0.058 3.942 10 O -0.387 6.387 11 C 0.045 3.955 12 C 0.089 3.911 13 N -0.644 5.644 14 C 0.549 3.451 15 O -0.543 6.543 16 C -0.545 4.545 17 H 0.070 0.930 18 C 0.090 3.910 19 N -0.761 5.761 20 Si 0.903 3.097 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.392 0.608 28 H 0.390 0.610 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.102 0.898 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -1.744 -6.909 8.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.412 5.412 3 C 0.413 3.587 4 O -0.495 6.495 5 N -0.340 5.340 6 C 0.042 3.958 7 C 0.002 3.998 8 H 0.078 0.922 9 C -0.021 4.021 10 O -0.306 6.306 11 C -0.033 4.033 12 C -0.035 4.035 13 N -0.385 5.385 14 C 0.355 3.645 15 O -0.424 6.424 16 C -0.581 4.581 17 H 0.088 0.912 18 C -0.131 4.131 19 N -0.390 5.390 20 Si 0.728 3.272 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.224 0.776 28 H 0.223 0.777 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.533 -0.717 -7.052 7.527 hybrid contribution 0.797 -1.191 1.305 1.938 sum 3.330 -1.908 -5.747 6.911 Atomic orbital electron populations 1.21198 0.79467 1.00799 1.01540 1.44766 1.06935 1.07415 1.82088 1.15735 0.82044 0.83589 0.77357 1.90807 1.68377 1.30560 1.59767 1.44617 1.03661 1.08882 1.76823 1.20897 0.87349 0.86141 1.01413 1.21746 0.93962 0.95441 0.88638 0.92189 1.22861 0.81157 0.96112 1.01942 1.87861 1.22232 1.89260 1.31203 1.23042 0.98473 0.96812 0.84971 1.22085 0.82547 0.95751 1.03119 1.48456 1.05267 1.70587 1.14192 1.18309 0.85829 0.77606 0.82793 1.90786 1.13962 1.57275 1.80386 1.20971 0.94306 1.49108 0.93761 0.91227 1.25673 0.94395 0.93211 0.99782 1.70003 1.03252 1.35044 1.30678 0.86383 0.79921 0.78667 0.82204 1.18843 1.20242 1.20242 0.93246 0.91637 0.92891 0.77585 0.77703 0.93710 0.89774 0.88632 0.92639 0.88910 0.92861 0.93246 0.88018 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.73 10.70 59.85 0.64 2.37 16 2 N -0.76 -13.41 5.72 -72.07 -0.41 -13.82 16 3 C 0.71 15.74 8.31 -86.91 -0.72 15.02 16 4 O -0.61 -15.81 16.33 5.29 0.09 -15.72 16 5 N -0.69 -14.31 3.17 -65.23 -0.21 -14.51 16 6 C 0.17 3.41 4.34 -4.04 -0.02 3.40 16 7 C 0.11 1.94 3.10 -67.42 -0.21 1.73 16 8 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 9 C 0.06 0.91 6.25 37.31 0.23 1.14 16 10 O -0.39 -6.24 10.74 -35.23 -0.38 -6.62 16 11 C 0.04 0.67 6.98 37.31 0.26 0.93 16 12 C 0.09 1.54 6.55 -3.53 -0.02 1.52 16 13 N -0.64 -13.24 3.02 -166.39 -0.50 -13.74 16 14 C 0.55 13.90 7.27 -12.98 -0.09 13.81 16 15 O -0.54 -14.99 8.88 5.21 0.05 -14.94 16 16 C -0.54 -14.11 8.85 -35.63 -0.32 -14.43 16 17 H 0.07 1.66 5.74 -52.49 -0.30 1.36 16 18 C 0.09 2.35 5.50 -17.37 -0.10 2.25 16 19 N -0.76 -21.60 11.86 55.55 0.66 -20.94 16 20 Si 0.90 19.30 29.56 -169.99 -5.02 14.27 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.39 5.95 8.84 -40.82 -0.36 5.59 16 28 H 0.39 7.72 7.99 -40.82 -0.33 7.40 16 29 H 0.04 0.85 8.06 -51.93 -0.42 0.43 16 30 H 0.08 2.11 6.48 -51.93 -0.34 1.78 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.10 1.81 5.42 -51.93 -0.28 1.53 16 37 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -33.97 302.55 -6.48 -40.45 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -4.96 Total: 13.28 kcal Atomic # 6 Polarization: 28.09 SS G_CDS: -0.34 Total: 27.74 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.46 Total: -63.02 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -0.25 Total: -37.28 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.97 -6.48 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601892970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.529 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds