Wall clock time and date at job start Mon Mar 30 2020 04:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34788 * 119.99987 * 2 1 4 4 O 1.21580 * 119.99556 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99588 * 180.02562 * 3 2 1 6 6 C 1.46497 * 119.99446 * 180.27525 * 5 3 2 7 7 C 1.52997 * 109.47100 * 185.44829 * 6 5 3 8 8 H 1.08996 * 109.68165 * 45.75850 * 7 6 5 9 9 C 1.53297 * 109.68249 * 166.27162 * 7 6 5 10 10 O 1.42968 * 109.21923 * 172.02385 * 9 7 6 11 11 C 1.42952 * 114.16903 * 297.41966 * 10 9 7 12 12 C 1.53295 * 109.22410 * 62.58310 * 11 10 9 13 13 N 1.47151 * 109.68550 * 285.23793 * 7 6 5 14 14 C 1.34785 * 120.97717 * 9.71129 * 13 7 6 15 15 O 1.21682 * 119.99969 * 4.37569 * 14 13 7 16 16 C 1.46376 * 119.99691 * 184.37454 * 14 13 7 17 17 H 1.07995 * 119.99870 * 351.92136 * 16 14 13 18 18 C 1.40047 * 119.99687 * 171.91267 * 16 14 13 19 19 N 1.30669 * 120.00182 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99957 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46952 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46861 * 120.00332 * 20 18 16 23 23 H 1.48496 * 109.47123 * 240.00443 * 20 18 16 24 24 H 1.09002 * 109.47132 * 59.99618 * 1 2 3 25 25 H 1.08990 * 109.46950 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46556 * 300.00062 * 1 2 3 27 27 H 0.96993 * 120.00432 * 180.02562 * 2 1 3 28 28 H 0.96993 * 120.00285 * 359.97438 * 5 3 2 29 29 H 1.08996 * 109.47347 * 305.44876 * 6 5 3 30 30 H 1.08999 * 109.47669 * 65.44799 * 6 5 3 31 31 H 1.08991 * 109.51623 * 291.94754 * 9 7 6 32 32 H 1.09003 * 109.51168 * 52.05596 * 9 7 6 33 33 H 1.09011 * 109.51237 * 182.50545 * 11 10 9 34 34 H 1.09004 * 109.51834 * 302.60572 * 11 10 9 35 35 H 1.09008 * 109.67854 * 67.41970 * 12 11 10 36 36 H 1.09001 * 109.68404 * 187.93509 * 12 11 10 37 37 H 0.97003 * 120.00051 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4359 0.0056 7 6 5.7177 2.1603 -0.1334 8 1 5.8847 1.4295 -0.9245 9 6 6.4531 3.4626 -0.4699 10 8 7.8634 3.2345 -0.4145 11 6 8.3447 2.8557 0.8772 12 6 7.7061 1.5224 1.2828 13 7 6.2466 1.6432 1.1387 14 6 5.4187 1.2921 2.1427 15 8 4.2136 1.3250 1.9773 16 6 5.9693 0.8711 3.4320 17 1 7.0326 0.7160 3.5403 18 6 5.1173 0.6697 4.5250 19 7 3.8307 0.8570 4.3938 20 14 5.8198 0.1317 6.1702 21 1 7.2936 -0.0105 6.0564 22 1 5.4994 1.1504 7.2021 23 1 5.2250 -1.1719 6.5600 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.9500 -0.8399 -0.0004 28 1 3.9716 0.3272 -0.0005 29 1 3.8843 3.0528 -0.8283 30 1 4.0314 2.9594 0.9430 31 1 6.1762 3.7885 -1.4724 32 1 6.1794 4.2322 0.2518 33 1 9.4286 2.7450 0.8438 34 1 8.0793 3.6234 1.6042 35 1 8.0739 0.7270 0.6344 36 1 7.9559 1.2960 2.3194 37 1 3.2406 0.7171 5.1508 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601892970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:32 Heat of formation + Delta-G solvation = -95.557505 kcal Electronic energy + Delta-G solvation = -22352.871370 eV Core-core repulsion = 18938.027610 eV Total energy + Delta-G solvation = -3414.843759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28265 -40.31064 -38.52951 -36.05613 -35.33440 -34.91528 -34.42096 -32.60580 -29.33552 -28.09922 -27.62749 -25.94456 -23.65413 -23.10502 -21.74704 -20.81644 -19.45097 -18.36148 -17.70228 -17.52913 -17.00401 -16.63909 -16.43761 -16.07573 -15.81424 -15.69555 -15.23557 -15.07400 -14.68906 -14.50663 -14.01964 -13.58543 -13.30091 -13.22928 -13.04796 -12.99229 -12.81818 -12.71571 -12.18305 -12.04211 -11.87979 -11.55892 -11.23649 -11.02908 -10.91632 -10.16140 -9.53501 -9.15756 -8.84676 -8.18705 -6.75543 1.37175 1.39665 1.54142 1.98257 2.21272 2.49871 2.55679 2.63941 2.94117 3.52331 3.70058 3.90552 3.99187 4.08360 4.26678 4.37978 4.44699 4.51169 4.64953 4.67965 4.69470 4.74922 4.90520 4.92572 5.03852 5.24678 5.40421 5.67193 5.71010 5.83438 6.12075 6.15891 6.20186 6.38968 6.94884 7.29907 7.44054 7.83296 8.53976 8.73266 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.009513 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.484898 B = 2942.736096 C = 4986.475021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.747 5.747 3 C 0.699 3.301 4 O -0.658 6.658 5 N -0.682 5.682 6 C 0.175 3.825 7 C 0.112 3.888 8 H 0.080 0.920 9 C 0.063 3.937 10 O -0.386 6.386 11 C 0.049 3.951 12 C 0.086 3.914 13 N -0.647 5.647 14 C 0.537 3.463 15 O -0.574 6.574 16 C -0.567 4.567 17 H 0.086 0.914 18 C 0.038 3.962 19 N -0.815 5.815 20 Si 0.982 3.018 21 H -0.247 1.247 22 H -0.278 1.278 23 H -0.274 1.274 24 H 0.053 0.947 25 H 0.112 0.888 26 H 0.029 0.971 27 H 0.406 0.594 28 H 0.394 0.606 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.128 0.872 32 H 0.043 0.957 33 H 0.131 0.869 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 -2.706 -7.537 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.402 5.402 3 C 0.399 3.601 4 O -0.543 6.543 5 N -0.333 5.333 6 C 0.050 3.950 7 C 0.008 3.992 8 H 0.098 0.902 9 C -0.015 4.015 10 O -0.304 6.304 11 C -0.028 4.028 12 C -0.038 4.038 13 N -0.387 5.387 14 C 0.342 3.658 15 O -0.457 6.457 16 C -0.604 4.604 17 H 0.104 0.896 18 C -0.178 4.178 19 N -0.445 5.445 20 Si 0.803 3.197 21 H -0.169 1.169 22 H -0.203 1.203 23 H -0.199 1.199 24 H 0.071 0.929 25 H 0.130 0.870 26 H 0.047 0.953 27 H 0.240 0.760 28 H 0.228 0.772 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.146 0.854 32 H 0.062 0.938 33 H 0.149 0.851 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.623 -1.715 -7.714 9.155 hybrid contribution 0.179 -0.890 1.428 1.692 sum 4.802 -2.605 -6.285 8.328 Atomic orbital electron populations 1.21412 0.77721 1.03580 1.00551 1.44755 1.08108 1.06696 1.80670 1.16114 0.82442 0.84177 0.77351 1.90761 1.69230 1.32441 1.61842 1.44571 1.03447 1.09147 1.76120 1.20739 0.89294 0.85883 0.99119 1.21870 0.92325 0.97184 0.87865 0.90230 1.22887 0.80967 0.94227 1.03435 1.87879 1.21903 1.89059 1.31571 1.23121 1.00358 0.94970 0.84379 1.22276 0.80434 0.97820 1.03242 1.48291 1.06539 1.69756 1.14122 1.18510 0.85918 0.77531 0.83869 1.90772 1.15433 1.58181 1.81341 1.21466 0.95283 1.49177 0.94481 0.89596 1.26710 0.94464 0.92673 1.03905 1.70178 1.05087 1.37307 1.31962 0.85193 0.79912 0.77909 0.76689 1.16950 1.20319 1.19939 0.92859 0.86951 0.95264 0.76003 0.77231 0.92244 0.95079 0.85420 0.93826 0.85117 0.93823 0.91429 0.88833 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.27 10.70 127.77 1.37 4.64 16 2 N -0.75 -26.39 5.72 -500.19 -2.86 -29.25 16 3 C 0.70 31.60 8.31 179.05 1.49 33.09 16 4 O -0.66 -35.07 16.33 -3.97 -0.06 -35.14 16 5 N -0.68 -28.84 3.17 -478.55 -1.52 -30.36 16 6 C 0.17 7.29 4.34 86.38 0.37 7.66 16 7 C 0.11 3.93 3.10 44.97 0.14 4.07 16 8 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 9 C 0.06 1.87 6.25 72.08 0.45 2.32 16 10 O -0.39 -11.22 10.74 -148.98 -1.60 -12.82 16 11 C 0.05 1.33 6.98 72.08 0.50 1.84 16 12 C 0.09 2.77 6.55 86.35 0.57 3.34 16 13 N -0.65 -26.23 3.02 -798.54 -2.41 -28.64 16 14 C 0.54 27.66 7.27 86.36 0.63 28.28 16 15 O -0.57 -32.79 8.88 -4.29 -0.04 -32.83 16 16 C -0.57 -29.52 8.85 24.83 0.22 -29.30 16 17 H 0.09 4.04 5.74 -2.91 -0.02 4.02 16 18 C 0.04 1.99 5.50 85.30 0.47 2.46 16 19 N -0.82 -47.76 11.86 21.83 0.26 -47.50 16 20 Si 0.98 39.68 29.56 68.60 2.03 41.70 16 21 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 22 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.41 12.01 8.84 -92.71 -0.82 11.19 16 28 H 0.39 15.69 7.99 -92.71 -0.74 14.95 16 29 H 0.06 2.28 8.06 -2.39 -0.02 2.26 16 30 H 0.03 1.64 6.48 -2.39 -0.02 1.62 16 31 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.13 2.61 8.14 -2.38 -0.02 2.59 16 34 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.09 3.18 5.42 -2.39 -0.01 3.17 16 37 H 0.27 14.62 8.29 -92.71 -0.77 13.85 16 Total: -1.00 -76.64 302.55 -0.45 -77.08 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: -0.45 Total: 39.34 kcal Atomic # 6 Polarization: 52.19 SS G_CDS: 6.21 Total: 58.40 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -6.53 Total: -135.74 kcal Atomic # 8 Polarization: -79.08 SS G_CDS: -1.70 Total: -80.78 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.70 kcal Total: -76.64 -0.45 -77.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601892970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.474 kcal (2) G-P(sol) polarization free energy of solvation -76.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds