Wall clock time and date at job start Mon Mar 30 2020 04:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47025 * 2 1 4 4 C 1.46892 * 111.00445 * 304.10155 * 3 2 1 5 5 C 1.53011 * 109.47067 * 293.94991 * 4 3 2 6 6 C 1.52991 * 109.47266 * 180.02562 * 5 4 3 7 7 S 1.80995 * 109.47081 * 180.02562 * 6 5 4 8 8 C 1.76206 * 100.00131 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99667 * 0.02562 * 8 7 6 10 10 C 1.38802 * 119.99688 * 179.97438 * 8 7 6 11 11 N 1.31621 * 120.00543 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99633 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47082 * 89.99829 * 12 10 8 14 14 H 1.48492 * 109.47141 * 210.00374 * 12 10 8 15 15 H 1.48504 * 109.46885 * 330.00383 * 12 10 8 16 16 C 1.46909 * 110.99865 * 68.05247 * 3 2 1 17 17 C 1.50704 * 109.47157 * 71.85262 * 16 3 2 18 18 N 1.33314 * 126.54816 * 263.97707 * 17 16 3 19 19 N 1.29000 * 107.34621 * 179.83549 * 18 17 16 20 20 N 1.28779 * 108.73408 * 0.42405 * 19 18 17 21 21 H 0.96990 * 125.45227 * 179.72559 * 20 19 18 22 22 N 1.28883 * 109.09525 * 359.73018 * 20 19 18 23 23 H 1.09004 * 109.46599 * 184.11894 * 1 2 3 24 24 H 1.09000 * 109.46967 * 304.11249 * 1 2 3 25 25 H 1.09001 * 109.47524 * 64.11784 * 1 2 3 26 26 H 1.09009 * 109.46922 * 240.00494 * 2 1 3 27 27 H 1.09003 * 109.47232 * 120.00481 * 2 1 3 28 28 H 1.08996 * 109.47503 * 53.95112 * 4 3 2 29 29 H 1.09001 * 109.47517 * 173.95308 * 4 3 2 30 30 H 1.08996 * 109.47058 * 300.00393 * 5 4 3 31 31 H 1.09001 * 109.46693 * 59.99812 * 5 4 3 32 32 H 1.09004 * 109.47102 * 300.00036 * 6 5 4 33 33 H 1.09001 * 109.47418 * 60.00256 * 6 5 4 34 34 H 0.96999 * 120.00359 * 179.97438 * 11 10 8 35 35 H 1.08999 * 109.47273 * 191.85329 * 16 3 2 36 36 H 1.08997 * 109.46797 * 311.85543 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.4703 2.1376 -1.1355 5 6 2.0156 1.5589 -2.4428 6 6 1.4439 2.3432 -3.6254 7 16 2.0884 1.6580 -5.1717 8 6 1.2906 2.7175 -6.3319 9 1 0.6336 3.5011 -5.9845 10 6 1.5075 2.5456 -7.6920 11 7 2.3086 1.5909 -8.1153 12 14 0.6622 3.6692 -8.9219 13 1 1.5230 4.8501 -9.1864 14 1 0.4313 2.9310 -10.1894 15 1 -0.6395 4.1199 -8.3672 16 6 1.7118 2.0521 1.2721 17 6 2.5937 1.4931 2.3589 18 7 2.2771 0.5244 3.2183 19 7 3.3007 0.3371 3.9808 20 7 4.2312 1.1564 3.6326 21 1 5.1047 1.2253 4.0485 22 7 3.8160 1.8701 2.6430 23 1 -0.3633 -1.0251 0.0738 24 1 -0.3633 0.5763 0.8508 25 1 -0.3634 0.4486 -0.9246 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 0.3830 2.0614 -1.1301 29 1 1.7615 3.1847 -1.0524 30 1 3.1029 1.6351 -2.4482 31 1 1.7244 0.5117 -2.5258 32 1 0.3566 2.2673 -3.6202 33 1 1.7355 3.3901 -3.5421 34 1 2.4599 1.4705 -9.0658 35 1 1.8910 3.1228 1.1736 36 1 0.6664 1.8808 1.5285 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686013241.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:56 Heat of formation + Delta-G solvation = 92.940705 kcal Electronic energy + Delta-G solvation = -18010.315777 eV Core-core repulsion = 15078.691536 eV Total energy + Delta-G solvation = -2931.624241 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.42681 -39.57343 -35.39549 -34.75358 -34.56400 -33.73763 -31.18076 -28.64196 -27.70310 -26.05480 -25.51848 -24.24004 -22.58919 -20.85867 -20.03570 -19.51929 -18.17884 -17.16698 -16.87313 -16.84375 -16.02306 -15.93903 -15.62007 -15.11131 -14.75041 -14.44396 -13.80494 -13.51684 -13.39789 -13.14826 -13.09850 -12.89083 -12.80589 -12.78699 -12.36092 -12.28063 -12.18773 -12.02380 -11.90313 -11.50641 -11.45948 -11.20742 -11.11208 -10.26922 -9.30721 -8.63224 -8.34821 -6.10572 0.18297 1.01606 1.33493 1.41071 1.50567 1.54858 1.79201 2.31305 2.77341 2.99457 3.11387 3.34066 3.38987 3.98664 4.09530 4.19169 4.26411 4.32293 4.43973 4.49403 4.57507 4.61234 4.66041 4.72367 4.77382 4.84288 5.02999 5.13441 5.25143 5.29640 5.42407 5.45823 5.68610 6.01367 6.03432 6.20779 7.07507 7.25153 8.74583 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.045474 B = 0.002968 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.593344 B = 9431.742866 C = 9558.297956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 N -0.541 5.541 4 C 0.069 3.931 5 C -0.081 4.081 6 C -0.086 4.086 7 S -0.204 6.204 8 C -0.535 4.535 9 H 0.074 0.926 10 C 0.014 3.986 11 N -0.909 5.909 12 Si 0.994 3.006 13 H -0.268 1.268 14 H -0.276 1.276 15 H -0.262 1.262 16 C 0.144 3.856 17 C 0.180 3.820 18 N -0.298 5.298 19 N -0.065 5.065 20 N -0.208 5.208 21 H 0.491 0.509 22 N -0.294 5.294 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.271 0.729 35 H 0.119 0.881 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 1.228 23.152 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.080 4.080 3 N -0.265 5.265 4 C -0.060 4.060 5 C -0.120 4.120 6 C -0.235 4.235 7 S 0.025 5.975 8 C -0.683 4.683 9 H 0.092 0.908 10 C -0.191 4.191 11 N -0.546 5.546 12 Si 0.816 3.184 13 H -0.193 1.193 14 H -0.201 1.201 15 H -0.186 1.186 16 C 0.013 3.987 17 C -0.104 4.104 18 N -0.171 5.171 19 N -0.060 5.060 20 N -0.059 5.059 21 H 0.349 0.651 22 N -0.147 5.147 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.135 -0.122 23.251 23.279 hybrid contribution -1.340 1.576 -0.783 2.212 sum -0.205 1.454 22.468 22.516 Atomic orbital electron populations 1.22325 0.96691 1.03147 1.02208 1.22163 0.94260 0.89481 1.02137 1.61995 1.60104 1.02793 1.01604 1.22087 0.98074 0.97923 0.87914 1.21124 1.00569 0.98952 0.91371 1.23144 1.02144 1.01986 0.96233 1.84703 1.64841 1.48489 0.99490 1.23048 1.32574 1.19200 0.93494 0.90767 1.26076 0.95831 0.97384 0.99822 1.70159 1.36225 1.32208 1.15960 0.85019 0.78707 0.77817 0.76889 1.19321 1.20079 1.18573 1.20417 0.95189 0.99186 0.83901 1.25739 0.90931 0.94645 0.99088 1.75869 1.19153 1.16433 1.05625 1.78875 0.93828 1.13524 1.19819 1.47875 1.17127 1.20650 1.20229 0.65126 1.74741 1.14051 1.20343 1.05578 0.91463 0.91480 0.92326 0.91180 0.91483 0.92506 0.89257 0.92035 0.92096 0.91730 0.91597 0.92050 0.86279 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.57 9.16 71.98 0.66 -2.91 16 2 C 0.05 1.06 5.64 86.31 0.49 1.54 16 3 N -0.54 -11.88 4.66 -900.77 -4.20 -16.08 16 4 C 0.07 1.58 4.63 86.31 0.40 1.98 16 5 C -0.08 -2.54 5.14 30.59 0.16 -2.38 16 6 C -0.09 -3.33 5.67 71.98 0.41 -2.92 16 7 S -0.20 -10.87 21.44 -56.49 -1.21 -12.08 16 8 C -0.54 -30.86 9.50 67.95 0.65 -30.22 16 9 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 10 C 0.01 0.77 5.49 84.86 0.47 1.24 16 11 N -0.91 -55.23 13.22 21.65 0.29 -54.94 16 12 Si 0.99 43.88 29.55 68.60 2.03 45.90 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 15 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 16 C 0.14 2.58 5.50 85.56 0.47 3.05 16 17 C 0.18 3.72 7.07 138.55 0.98 4.70 16 18 N -0.30 -6.67 12.04 -51.26 -0.62 -7.29 16 19 N -0.07 -1.27 13.48 37.02 0.50 -0.77 16 20 N -0.21 -2.97 7.91 37.00 0.29 -2.68 16 21 H 0.49 2.29 8.96 -347.68 -3.12 -0.82 16 22 N -0.29 -5.72 12.36 -51.20 -0.63 -6.35 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.14 6.26 -2.39 -0.01 1.13 16 25 H 0.06 1.21 6.46 -2.39 -0.02 1.19 16 26 H 0.07 1.75 6.67 -2.38 -0.02 1.73 16 27 H 0.07 1.56 6.93 -2.39 -0.02 1.54 16 28 H 0.06 1.20 5.99 -2.39 -0.01 1.18 16 29 H 0.09 1.86 7.86 -2.39 -0.02 1.84 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 1.97 6.64 -2.39 -0.02 1.95 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.12 1.76 7.81 -2.39 -0.02 1.74 16 36 H 0.09 1.35 6.08 -2.39 -0.01 1.34 16 Total: -1.00 -71.77 312.14 -0.89 -72.65 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -2.01 Total: 7.54 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.67 Total: -25.92 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -4.37 Total: -88.11 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -10.87 SS G_CDS: -1.21 Total: -12.08 kcal Total: -71.77 -0.89 -72.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686013241.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.596 kcal (2) G-P(sol) polarization free energy of solvation -71.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds