Wall clock time and date at job start Mon Mar 30 2020 04:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46960 * 110.99476 * 2 1 4 4 C 1.53047 * 109.36216 * 183.18855 * 3 2 1 5 5 N 1.46960 * 109.36762 * 301.60135 * 4 3 2 6 6 C 1.46901 * 111.00251 * 183.19126 * 5 4 3 7 7 C 1.50693 * 109.47198 * 169.83741 * 6 5 4 8 8 O 1.21299 * 119.99909 * 353.79788 * 7 6 5 9 9 N 1.34780 * 120.00190 * 173.79519 * 7 6 5 10 10 C 1.37095 * 120.00030 * 180.02562 * 9 7 6 11 11 H 1.07993 * 120.00116 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99752 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00105 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99919 * 359.97438 * 12 10 9 15 15 H 1.48492 * 109.47311 * 90.00670 * 14 12 10 16 16 H 1.48502 * 109.46897 * 210.00296 * 14 12 10 17 17 H 1.48500 * 109.47467 * 330.00020 * 14 12 10 18 18 C 1.46949 * 110.88106 * 59.31718 * 5 4 3 19 19 C 1.46956 * 111.00191 * 123.79900 * 2 1 3 20 20 H 1.08997 * 109.50734 * 296.78979 * 19 2 1 21 21 C 1.50697 * 109.48652 * 56.84835 * 19 2 1 22 22 O 1.20827 * 120.00150 * 19.88840 * 21 19 2 23 23 O 1.34229 * 119.99924 * 199.88974 * 21 19 2 24 24 H 1.08997 * 109.46986 * 296.19675 * 1 2 3 25 25 H 1.08992 * 109.47407 * 56.20057 * 1 2 3 26 26 H 1.09004 * 109.46787 * 176.19940 * 1 2 3 27 27 H 1.09001 * 109.48712 * 63.22513 * 3 2 1 28 28 H 1.08997 * 109.50917 * 303.16758 * 3 2 1 29 29 H 1.09004 * 109.49067 * 181.63540 * 4 3 2 30 30 H 1.09000 * 109.49220 * 61.56927 * 4 3 2 31 31 H 1.09002 * 109.47087 * 289.83780 * 6 5 4 32 32 H 1.08997 * 109.47186 * 49.83762 * 6 5 4 33 33 H 0.96999 * 119.99720 * 359.97438 * 9 7 6 34 34 H 0.96995 * 120.00457 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.49586 * 180.71416 * 18 5 4 36 36 H 1.09009 * 109.50748 * 60.66086 * 18 5 4 37 37 H 0.96695 * 117.00405 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5233 1.3292 -0.0803 5 7 4.0501 0.5660 1.0597 6 6 5.5191 0.5661 1.0598 7 6 6.0215 -0.0035 2.3613 8 8 5.2391 -0.2685 3.2495 9 7 7.3402 -0.2187 2.5384 10 6 7.7971 -0.7374 3.7223 11 1 7.1005 -0.9733 4.5131 12 6 9.1567 -0.9587 3.9051 13 7 9.5948 -1.4555 5.0401 14 14 10.3616 -0.5500 2.5375 15 1 10.8230 0.8535 2.6872 16 1 11.5282 -1.4655 2.6156 17 1 9.6917 -0.7132 1.2222 18 6 3.5235 -0.8059 1.0598 19 6 1.9957 -0.7632 1.1401 20 1 1.6939 -0.2824 2.0705 21 6 1.4506 -2.1675 1.0998 22 8 1.0103 -2.6153 0.0676 23 8 1.4542 -2.9210 2.2107 24 1 -0.3633 0.4537 0.9221 25 1 -0.3634 0.5716 -0.8539 26 1 -0.3633 -1.0255 -0.0681 27 1 1.6937 1.8774 0.9174 28 1 1.6012 1.9133 -0.8600 29 1 3.9177 2.3450 -0.0512 30 1 3.8253 0.8482 -1.0106 31 1 5.8825 -0.0431 0.2321 32 1 5.8824 1.5875 0.9459 33 1 7.9658 -0.0071 1.8280 34 1 10.5438 -1.6103 5.1676 35 1 3.9179 -1.3469 1.9199 36 1 3.8254 -1.3117 0.1425 37 1 1.0946 -3.8154 2.1357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687289619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:58 Heat of formation + Delta-G solvation = -92.325237 kcal Electronic energy + Delta-G solvation = -21523.849327 eV Core-core repulsion = 18109.145730 eV Total energy + Delta-G solvation = -3414.703597 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73250 -39.13079 -37.98522 -36.17668 -35.13199 -33.87549 -31.70264 -31.44757 -29.59118 -26.58918 -24.99512 -24.34060 -23.24471 -21.57752 -19.75522 -19.37607 -18.33843 -18.13718 -16.85134 -16.29127 -15.90790 -15.57250 -15.13671 -14.95437 -14.80777 -14.26773 -14.17468 -13.73316 -13.61970 -13.18470 -12.84790 -12.53996 -12.28287 -12.23438 -11.95193 -11.67896 -11.53195 -11.46043 -11.20524 -11.07352 -10.87347 -10.60140 -10.33557 -9.98135 -9.55019 -8.67365 -8.52187 -8.19234 -8.06240 -6.31677 -3.83094 2.10980 2.79650 3.02177 3.06402 3.14904 3.70283 3.72225 3.93916 4.09854 4.68599 4.74913 4.87612 5.01833 5.12068 5.20297 5.24324 5.30112 5.37305 5.39690 5.57909 5.65261 5.70180 5.76599 5.79365 5.88249 5.97046 6.09913 6.44734 6.66218 6.76635 7.03906 7.15175 7.57441 7.89508 8.13664 8.59325 8.94575 9.41707 9.82030 10.81391 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.004628 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.093555 B = 6048.460190 C = 6653.996859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.528 5.528 3 C 0.062 3.938 4 C 0.051 3.949 5 N -0.514 5.514 6 C 0.044 3.956 7 C 0.450 3.550 8 O -0.558 6.558 9 N -0.590 5.590 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.069 3.931 19 C 0.099 3.901 20 H 0.089 0.911 21 C 0.487 3.513 22 O -0.502 6.502 23 O -0.508 6.508 24 H 0.026 0.974 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.370 0.630 34 H 0.273 0.727 35 H 0.114 0.886 36 H 0.041 0.959 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.387 3.957 -11.972 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.254 5.254 3 C -0.066 4.066 4 C -0.077 4.077 5 N -0.238 5.238 6 C -0.087 4.087 7 C 0.235 3.765 8 O -0.439 6.439 9 N -0.230 5.230 10 C -0.433 4.433 11 H 0.138 0.862 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.060 4.060 19 C -0.011 4.011 20 H 0.107 0.893 21 C 0.328 3.672 22 O -0.389 6.389 23 O -0.319 6.319 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.203 0.797 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.059 0.941 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -13.694 3.975 -11.470 18.300 hybrid contribution 0.903 -0.322 -1.078 1.442 sum -12.792 3.653 -12.548 18.287 Atomic orbital electron populations 1.22558 0.86713 1.03454 1.00644 1.61934 1.08370 1.13982 1.41154 1.22196 0.94730 0.88015 1.01622 1.22268 0.94174 0.99005 0.92256 1.61675 1.06917 1.13457 1.41795 1.21897 0.87539 1.02156 0.97095 1.19637 0.82828 0.84755 0.89239 1.90555 1.54750 1.54815 1.43804 1.42222 1.06168 1.58516 1.16097 1.19428 0.93255 1.38286 0.92341 0.86212 1.25033 0.96893 0.97367 0.96807 1.69618 1.15348 1.43474 1.23662 0.86682 0.81788 0.79265 0.81714 1.19595 1.20202 1.19527 1.22152 0.89922 0.90835 1.03072 1.21191 0.96720 0.88026 0.95119 0.89346 1.23160 0.75085 0.88260 0.80684 1.90682 1.43080 1.73015 1.32132 1.84607 1.77496 1.30795 1.38991 0.95514 0.90837 0.90295 0.93285 0.89551 0.89689 0.93804 0.93128 0.88657 0.79717 0.91609 0.86811 0.94064 0.73178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.14 60.07 0.55 0.70 16 2 N -0.53 -6.74 4.52 -236.13 -1.07 -7.80 16 3 C 0.06 0.68 5.62 -3.77 -0.02 0.66 16 4 C 0.05 0.61 5.61 -3.77 -0.02 0.59 16 5 N -0.51 -8.03 4.40 -235.92 -1.04 -9.07 16 6 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 7 C 0.45 9.94 7.35 -10.99 -0.08 9.86 16 8 O -0.56 -14.46 14.26 5.54 0.08 -14.38 16 9 N -0.59 -13.78 5.09 -10.97 -0.06 -13.84 16 10 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 14 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 18 C 0.07 1.11 4.53 -3.77 -0.02 1.09 16 19 C 0.10 1.43 2.47 -68.81 -0.17 1.26 16 20 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 21 C 0.49 6.88 6.77 36.00 0.24 7.12 16 22 O -0.50 -7.88 15.50 -18.75 -0.29 -8.17 16 23 O -0.51 -6.23 13.42 -39.26 -0.53 -6.76 16 24 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 26 H 0.08 0.95 5.84 -51.93 -0.30 0.65 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.10 1.32 8.02 -51.93 -0.42 0.90 16 33 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.11 2.20 6.09 -51.93 -0.32 1.88 16 36 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.41 2.99 9.10 45.56 0.41 3.40 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -34.05 305.88 -6.23 -40.28 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -4.21 Total: 11.08 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 0.21 Total: 14.38 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -1.39 Total: -55.47 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.74 Total: -29.31 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.05 -6.23 -40.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687289619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.044 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds