Wall clock time and date at job start Mon Mar 30 2020 04:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46960 * 110.99476 * 2 1 4 4 C 1.53047 * 109.36216 * 183.18855 * 3 2 1 5 5 N 1.46960 * 109.36762 * 301.60135 * 4 3 2 6 6 C 1.46901 * 111.00251 * 183.19126 * 5 4 3 7 7 C 1.50693 * 109.47198 * 169.83741 * 6 5 4 8 8 O 1.21299 * 119.99909 * 353.79788 * 7 6 5 9 9 N 1.34780 * 120.00190 * 173.79519 * 7 6 5 10 10 C 1.37095 * 120.00030 * 180.02562 * 9 7 6 11 11 H 1.07993 * 120.00116 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99752 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00105 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99919 * 359.97438 * 12 10 9 15 15 H 1.48492 * 109.47311 * 90.00670 * 14 12 10 16 16 H 1.48502 * 109.46897 * 210.00296 * 14 12 10 17 17 H 1.48500 * 109.47467 * 330.00020 * 14 12 10 18 18 C 1.46949 * 110.88106 * 59.31718 * 5 4 3 19 19 C 1.46956 * 111.00191 * 123.79900 * 2 1 3 20 20 H 1.08997 * 109.50734 * 296.78979 * 19 2 1 21 21 C 1.50697 * 109.48652 * 56.84835 * 19 2 1 22 22 O 1.20827 * 120.00150 * 19.88840 * 21 19 2 23 23 O 1.34229 * 119.99924 * 199.88974 * 21 19 2 24 24 H 1.08997 * 109.46986 * 296.19675 * 1 2 3 25 25 H 1.08992 * 109.47407 * 56.20057 * 1 2 3 26 26 H 1.09004 * 109.46787 * 176.19940 * 1 2 3 27 27 H 1.09001 * 109.48712 * 63.22513 * 3 2 1 28 28 H 1.08997 * 109.50917 * 303.16758 * 3 2 1 29 29 H 1.09004 * 109.49067 * 181.63540 * 4 3 2 30 30 H 1.09000 * 109.49220 * 61.56927 * 4 3 2 31 31 H 1.09002 * 109.47087 * 289.83780 * 6 5 4 32 32 H 1.08997 * 109.47186 * 49.83762 * 6 5 4 33 33 H 0.96999 * 119.99720 * 359.97438 * 9 7 6 34 34 H 0.96995 * 120.00457 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.49586 * 180.71416 * 18 5 4 36 36 H 1.09009 * 109.50748 * 60.66086 * 18 5 4 37 37 H 0.96695 * 117.00405 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5233 1.3292 -0.0803 5 7 4.0501 0.5660 1.0597 6 6 5.5191 0.5661 1.0598 7 6 6.0215 -0.0035 2.3613 8 8 5.2391 -0.2685 3.2495 9 7 7.3402 -0.2187 2.5384 10 6 7.7971 -0.7374 3.7223 11 1 7.1005 -0.9733 4.5131 12 6 9.1567 -0.9587 3.9051 13 7 9.5948 -1.4555 5.0401 14 14 10.3616 -0.5500 2.5375 15 1 10.8230 0.8535 2.6872 16 1 11.5282 -1.4655 2.6156 17 1 9.6917 -0.7132 1.2222 18 6 3.5235 -0.8059 1.0598 19 6 1.9957 -0.7632 1.1401 20 1 1.6939 -0.2824 2.0705 21 6 1.4506 -2.1675 1.0998 22 8 1.0103 -2.6153 0.0676 23 8 1.4542 -2.9210 2.2107 24 1 -0.3633 0.4537 0.9221 25 1 -0.3634 0.5716 -0.8539 26 1 -0.3633 -1.0255 -0.0681 27 1 1.6937 1.8774 0.9174 28 1 1.6012 1.9133 -0.8600 29 1 3.9177 2.3450 -0.0512 30 1 3.8253 0.8482 -1.0106 31 1 5.8825 -0.0431 0.2321 32 1 5.8824 1.5875 0.9459 33 1 7.9658 -0.0071 1.8280 34 1 10.5438 -1.6103 5.1676 35 1 3.9179 -1.3469 1.9199 36 1 3.8254 -1.3117 0.1425 37 1 1.0946 -3.8154 2.1357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687289619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:57 Heat of formation + Delta-G solvation = -122.661755 kcal Electronic energy + Delta-G solvation = -21525.164817 eV Core-core repulsion = 18109.145730 eV Total energy + Delta-G solvation = -3416.019088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.83369 -40.55186 -39.40012 -37.29071 -36.38419 -35.74222 -33.72808 -32.51128 -30.76407 -28.00854 -26.16254 -25.84069 -24.41100 -22.67671 -21.24087 -20.80069 -20.20672 -19.25472 -17.96325 -17.77350 -17.20664 -16.78425 -16.69153 -16.13700 -16.01873 -15.61891 -15.39969 -15.06831 -14.87821 -14.84615 -14.32121 -13.99916 -13.66162 -13.32417 -13.22115 -12.96574 -12.69240 -12.57684 -12.47965 -12.38816 -12.15489 -12.04338 -11.93076 -11.45236 -11.42441 -10.37482 -10.21060 -9.53793 -9.29742 -8.38870 -5.99311 0.98517 1.31954 1.37241 1.45888 1.81639 1.98357 2.24941 2.55809 2.85116 3.17080 3.21511 3.65881 3.90680 3.97776 4.05342 4.21316 4.26333 4.38265 4.41992 4.49589 4.53495 4.59292 4.67055 4.77286 4.89828 4.94685 5.02695 5.47016 5.54339 5.70667 5.75295 5.95753 5.99623 6.09858 6.62305 6.91330 6.91432 7.42780 7.99914 8.78810 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.004628 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.093555 B = 6048.460190 C = 6653.996859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.535 5.535 3 C 0.061 3.939 4 C 0.052 3.948 5 N -0.532 5.532 6 C 0.055 3.945 7 C 0.450 3.550 8 O -0.603 6.603 9 N -0.593 5.593 10 C -0.325 4.325 11 H 0.056 0.944 12 C -0.015 4.015 13 N -0.936 5.936 14 Si 0.963 3.037 15 H -0.256 1.256 16 H -0.277 1.277 17 H -0.232 1.232 18 C 0.076 3.924 19 C 0.102 3.898 20 H 0.077 0.923 21 C 0.491 3.509 22 O -0.519 6.519 23 O -0.513 6.513 24 H 0.033 0.967 25 H 0.096 0.904 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.389 0.611 34 H 0.278 0.722 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.155 5.819 -15.527 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.262 5.262 3 C -0.066 4.066 4 C -0.075 4.075 5 N -0.258 5.258 6 C -0.075 4.075 7 C 0.237 3.763 8 O -0.487 6.487 9 N -0.235 5.235 10 C -0.455 4.455 11 H 0.074 0.926 12 C -0.213 4.213 13 N -0.577 5.577 14 Si 0.784 3.216 15 H -0.180 1.180 16 H -0.203 1.203 17 H -0.155 1.155 18 C -0.053 4.053 19 C -0.008 4.008 20 H 0.095 0.905 21 C 0.333 3.667 22 O -0.408 6.408 23 O -0.327 6.327 24 H 0.051 0.949 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.225 0.775 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -13.497 5.839 -15.045 21.038 hybrid contribution 0.683 -0.938 0.140 1.168 sum -12.815 4.901 -14.905 20.258 Atomic orbital electron populations 1.22567 0.85590 1.02984 1.01980 1.61998 1.09463 1.14912 1.39853 1.22342 0.94276 0.87156 1.02835 1.22428 0.94641 0.99633 0.90836 1.61641 1.06576 1.13156 1.44394 1.21856 0.88147 1.04036 0.93486 1.20892 0.81929 0.82613 0.90849 1.90543 1.55916 1.56039 1.46208 1.42047 1.07195 1.59057 1.15162 1.18995 0.93039 1.40316 0.93118 0.92582 1.26089 0.98768 0.96343 1.00125 1.69803 1.16238 1.44902 1.26721 0.85384 0.78029 0.79387 0.78841 1.18025 1.20263 1.15522 1.21901 0.91126 0.91225 1.01060 1.21073 0.95670 0.88506 0.95562 0.90496 1.23143 0.74614 0.88359 0.80627 1.90668 1.43946 1.73451 1.32700 1.84575 1.77397 1.32259 1.38423 0.94881 0.88550 0.91840 0.93696 0.86402 0.87088 0.92994 0.90467 0.85014 0.77540 0.91222 0.90933 0.94037 0.70829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.14 127.69 1.17 1.49 16 2 N -0.54 -12.58 4.52 -900.97 -4.07 -16.65 16 3 C 0.06 1.13 5.62 86.31 0.49 1.62 16 4 C 0.05 1.03 5.61 86.31 0.48 1.51 16 5 N -0.53 -15.59 4.40 -900.30 -3.96 -19.56 16 6 C 0.06 1.64 5.45 85.55 0.47 2.11 16 7 C 0.45 19.84 7.35 87.65 0.64 20.48 16 8 O -0.60 -32.67 14.26 -3.09 -0.04 -32.72 16 9 N -0.59 -27.47 5.09 -306.98 -1.56 -29.03 16 10 C -0.33 -18.88 10.16 84.04 0.85 -18.03 16 11 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 12 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 13 N -0.94 -56.29 13.96 21.66 0.30 -55.99 16 14 Si 0.96 38.43 27.74 68.60 1.90 40.33 16 15 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 16 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 18 C 0.08 2.44 4.53 86.31 0.39 2.83 16 19 C 0.10 2.90 2.47 44.17 0.11 3.01 16 20 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 21 C 0.49 13.87 6.77 71.23 0.48 14.36 16 22 O -0.52 -16.07 15.50 21.96 0.34 -15.73 16 23 O -0.51 -12.80 13.42 -51.41 -0.69 -13.49 16 24 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.10 1.44 8.13 -2.39 -0.02 1.42 16 26 H 0.06 1.46 5.84 -2.38 -0.01 1.45 16 27 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.12 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.11 1.66 8.07 -2.38 -0.02 1.64 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.94 8.12 -2.39 -0.02 1.92 16 32 H 0.13 3.00 8.02 -2.39 -0.02 2.99 16 33 H 0.39 14.86 5.76 -92.71 -0.53 14.33 16 34 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.07 2.93 6.09 -2.39 -0.01 2.91 16 36 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.43 6.24 9.10 -74.06 -0.67 5.57 16 Total: -1.00 -79.70 305.88 -2.40 -82.10 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.16 Total: 31.71 kcal Atomic # 6 Polarization: 23.47 SS G_CDS: 5.55 Total: 29.02 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -9.30 Total: -121.23 kcal Atomic # 8 Polarization: -61.54 SS G_CDS: -0.39 Total: -61.94 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.90 Total: 40.33 kcal Total: -79.70 -2.40 -82.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687289619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.558 kcal (2) G-P(sol) polarization free energy of solvation -79.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds