Wall clock time and date at job start Mon Mar 30 2020 05:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99909 * 2 1 4 4 C 1.53005 * 109.47133 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47299 * 64.99994 * 4 3 2 6 6 C 1.46498 * 120.00043 * 270.00095 * 5 4 3 7 7 C 1.50707 * 109.47382 * 278.13099 * 6 5 4 8 8 H 1.08005 * 119.99321 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00260 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00214 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99855 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47055 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46987 * 119.99704 * 11 9 7 14 14 H 1.48495 * 109.47062 * 239.99509 * 11 9 7 15 15 C 1.34772 * 120.00018 * 90.00367 * 5 4 3 16 16 O 1.21281 * 120.00459 * 6.27304 * 15 5 4 17 17 C 1.50702 * 119.99962 * 186.28050 * 15 5 4 18 18 C 1.52996 * 110.56617 * 60.94612 * 17 15 5 19 19 C 1.54513 * 110.51250 * 183.62661 * 17 15 5 20 20 C 1.54479 * 104.06276 * 118.64172 * 19 17 15 21 21 O 1.44427 * 104.80581 * 336.02512 * 20 19 17 22 22 C 1.44425 * 105.27632 * 40.50667 * 21 20 19 23 23 H 1.08998 * 109.46988 * 299.99706 * 1 2 3 24 24 H 1.08997 * 109.47076 * 60.00068 * 1 2 3 25 25 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47505 * 60.00215 * 3 2 1 27 27 H 1.09002 * 109.47618 * 299.99956 * 3 2 1 28 28 H 1.09006 * 109.46677 * 304.99447 * 4 3 2 29 29 H 1.09005 * 109.47145 * 185.00121 * 4 3 2 30 30 H 1.08998 * 109.47426 * 38.12715 * 6 5 4 31 31 H 1.09000 * 109.47505 * 158.13335 * 6 5 4 32 32 H 0.97004 * 120.00751 * 180.02562 * 10 9 7 33 33 H 1.09003 * 109.47438 * 197.73095 * 18 17 15 34 34 H 1.08997 * 109.47301 * 317.73495 * 18 17 15 35 35 H 1.09003 * 109.47049 * 77.73744 * 18 17 15 36 36 H 1.09002 * 110.51191 * 237.28778 * 19 17 15 37 37 H 1.09002 * 110.51072 * 0.02562 * 19 17 15 38 38 H 1.09007 * 110.37073 * 94.85598 * 20 19 17 39 39 H 1.08998 * 110.37015 * 217.19114 * 20 19 17 40 40 H 1.08997 * 110.37390 * 200.66093 * 22 21 20 41 41 H 1.09005 * 110.46566 * 78.36610 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1053 -0.8920 -1.3427 7 6 5.4280 -1.3158 -0.7580 8 1 6.1046 -0.5743 -0.3595 9 6 5.7748 -2.6500 -0.7326 10 7 4.9511 -3.5528 -1.2182 11 14 7.4147 -3.1751 -0.0084 12 1 8.1525 -1.9771 0.4666 13 1 7.1797 -4.0968 1.1321 14 1 8.2157 -3.8691 -1.0486 15 6 4.2616 1.3338 -2.3217 16 8 4.2650 2.5420 -2.2159 17 6 4.5769 0.6928 -3.6486 18 6 3.3885 -0.1351 -4.1415 19 6 4.9583 1.7669 -4.6918 20 6 6.4078 1.4080 -5.0874 21 8 6.9252 0.6673 -3.9607 22 6 5.8412 -0.1880 -3.5374 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8465 -0.8900 28 1 3.8514 0.5683 0.8411 29 1 3.9785 2.1766 0.0889 30 1 3.2947 -1.3639 -0.7874 31 1 4.0556 -1.1973 -2.3879 32 1 5.1948 -4.4916 -1.2001 33 1 3.7237 -0.8289 -4.9125 34 1 2.9652 -0.6953 -3.3078 35 1 2.6298 0.5291 -4.5555 36 1 4.3001 1.7081 -5.5587 37 1 4.9192 2.7615 -4.2476 38 1 6.4140 0.7883 -5.9841 39 1 6.9928 2.3137 -5.2470 40 1 5.9909 -0.5083 -2.5064 41 1 5.7596 -1.0536 -4.1949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687410171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:43 Heat of formation + Delta-G solvation = -117.629564 kcal Electronic energy + Delta-G solvation = -23016.252262 eV Core-core repulsion = 19703.991730 eV Total energy + Delta-G solvation = -3312.260532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23667 -38.02560 -37.16851 -35.10325 -33.20985 -32.63908 -30.08533 -28.76606 -27.18426 -25.98188 -25.81844 -23.27607 -22.87544 -22.33000 -20.54153 -18.05558 -16.66287 -16.39837 -16.14921 -15.70112 -15.47816 -15.31518 -14.82953 -14.55568 -14.48511 -13.99710 -13.76802 -13.03365 -12.83083 -12.39334 -12.23888 -12.09689 -11.91171 -11.63757 -11.47938 -11.37448 -10.99586 -10.97917 -10.86979 -10.79493 -10.51031 -10.36784 -10.14611 -9.95721 -9.54753 -9.42570 -9.30959 -8.76823 -8.50154 -7.68491 -6.18849 -4.24129 3.24401 3.32708 3.35004 3.41220 3.88499 4.16008 4.35489 4.59086 4.90875 5.13222 5.17278 5.37961 5.42959 5.47123 5.51952 5.57008 5.64400 5.69857 5.70490 5.75176 5.84746 5.97240 6.05260 6.11651 6.20077 6.24894 6.40341 6.41099 6.48411 6.57785 6.87949 7.08807 7.31636 7.40831 7.48111 7.60404 7.78331 8.07366 8.39911 8.79296 9.01515 9.40887 10.86459 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.010474 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.344229 B = 2672.687871 C = 4343.100417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.049 3.951 4 C 0.120 3.880 5 N -0.586 5.586 6 C 0.218 3.782 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.070 3.930 10 N -0.882 5.882 11 Si 0.892 3.108 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.531 3.469 16 O -0.574 6.574 17 C -0.107 4.107 18 C -0.144 4.144 19 C -0.143 4.143 20 C 0.044 3.956 21 O -0.375 6.375 22 C 0.027 3.973 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.265 0.735 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.158 0.842 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 5.862 -3.296 8.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C -0.029 4.029 4 C -0.004 4.004 5 N -0.315 5.315 6 C 0.099 3.901 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.134 4.134 10 N -0.520 5.520 11 Si 0.719 3.281 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.207 1.207 15 C 0.319 3.681 16 O -0.456 6.456 17 C -0.110 4.110 18 C -0.201 4.201 19 C -0.181 4.181 20 C -0.034 4.034 21 O -0.294 6.294 22 C -0.049 4.049 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.175 0.825 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.449 6.095 -3.153 8.763 hybrid contribution 0.320 -0.299 0.221 0.491 sum -5.129 5.797 -2.932 8.277 Atomic orbital electron populations 1.22680 0.82282 1.02375 0.99122 1.88072 1.18546 1.27392 1.95178 1.23033 0.95364 0.84909 0.99597 1.21330 0.90858 0.99726 0.88455 1.48048 1.63679 1.09916 1.09845 1.19967 0.97609 0.72968 0.99589 1.21491 1.02942 0.92556 1.40871 0.91790 1.24923 0.97280 0.96351 0.94894 1.69931 1.35863 1.01591 1.44569 0.86516 0.83643 0.78876 0.79019 1.19458 1.20845 1.20696 1.20124 0.75753 0.86503 0.85707 1.90531 1.55018 1.14769 1.85244 1.21934 0.98619 0.96902 0.93545 1.22108 0.96147 0.99326 1.02517 1.23054 0.96597 1.00720 0.97760 1.23347 0.93899 0.95951 0.90167 1.89147 1.36550 1.56455 1.47200 1.24667 0.82681 0.90827 1.06725 0.94750 0.94717 0.89868 0.93228 0.93645 0.89259 0.89459 0.93274 0.92593 0.92496 0.91716 0.89665 0.92837 0.90863 0.88803 0.93061 0.89893 0.82502 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.61 9.42 -35.23 -0.33 -6.94 16 3 C 0.05 0.80 6.28 37.16 0.23 1.03 16 4 C 0.12 2.26 5.86 -4.04 -0.02 2.24 16 5 N -0.59 -12.47 2.40 -175.06 -0.42 -12.89 16 6 C 0.22 5.09 3.73 -5.19 -0.02 5.07 16 7 C -0.54 -13.79 6.62 -34.44 -0.23 -14.02 16 8 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.88 -23.64 13.29 55.43 0.74 -22.90 16 11 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.53 11.37 6.47 -10.99 -0.07 11.30 16 16 O -0.57 -13.13 14.84 5.56 0.08 -13.05 16 17 C -0.11 -2.03 0.69 -154.09 -0.11 -2.14 16 18 C -0.14 -2.44 7.97 37.16 0.30 -2.14 16 19 C -0.14 -2.40 6.29 -25.16 -0.16 -2.55 16 20 C 0.04 0.71 7.63 37.93 0.29 1.00 16 21 O -0.37 -7.80 11.65 -35.23 -0.41 -8.21 16 22 C 0.03 0.56 5.59 37.94 0.21 0.77 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.71 8.07 -51.93 -0.42 1.29 16 29 H 0.09 1.60 7.35 -51.93 -0.38 1.22 16 30 H 0.05 1.25 7.01 -51.93 -0.36 0.89 16 31 H 0.06 1.31 3.43 -51.93 -0.18 1.13 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 34 H 0.08 1.60 5.31 -51.93 -0.28 1.32 16 35 H 0.05 0.80 7.99 -51.93 -0.41 0.39 16 36 H 0.07 1.02 7.66 -51.93 -0.40 0.63 16 37 H 0.09 1.70 6.51 -51.93 -0.34 1.36 16 38 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.16 3.76 3.55 -51.93 -0.18 3.57 16 41 H 0.06 1.19 7.58 -51.93 -0.39 0.80 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -29.31 321.32 -5.33 -34.65 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.25 Total: 5.16 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 1.44 Total: 3.81 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.32 Total: -35.79 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.66 Total: -28.19 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.31 -5.33 -34.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687410171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.984 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds