Wall clock time and date at job start Mon Mar 30 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99909 * 2 1 4 4 C 1.53005 * 109.47133 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47299 * 64.99994 * 4 3 2 6 6 C 1.46498 * 120.00043 * 270.00095 * 5 4 3 7 7 C 1.50707 * 109.47382 * 278.13099 * 6 5 4 8 8 H 1.08005 * 119.99321 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00260 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00214 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99855 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47055 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46987 * 119.99704 * 11 9 7 14 14 H 1.48495 * 109.47062 * 239.99509 * 11 9 7 15 15 C 1.34772 * 120.00018 * 90.00367 * 5 4 3 16 16 O 1.21281 * 120.00459 * 6.27304 * 15 5 4 17 17 C 1.50702 * 119.99962 * 186.28050 * 15 5 4 18 18 C 1.52996 * 110.56617 * 60.94612 * 17 15 5 19 19 C 1.54513 * 110.51250 * 183.62661 * 17 15 5 20 20 C 1.54479 * 104.06276 * 118.64172 * 19 17 15 21 21 O 1.44427 * 104.80581 * 336.02512 * 20 19 17 22 22 C 1.44425 * 105.27632 * 40.50667 * 21 20 19 23 23 H 1.08998 * 109.46988 * 299.99706 * 1 2 3 24 24 H 1.08997 * 109.47076 * 60.00068 * 1 2 3 25 25 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47505 * 60.00215 * 3 2 1 27 27 H 1.09002 * 109.47618 * 299.99956 * 3 2 1 28 28 H 1.09006 * 109.46677 * 304.99447 * 4 3 2 29 29 H 1.09005 * 109.47145 * 185.00121 * 4 3 2 30 30 H 1.08998 * 109.47426 * 38.12715 * 6 5 4 31 31 H 1.09000 * 109.47505 * 158.13335 * 6 5 4 32 32 H 0.97004 * 120.00751 * 180.02562 * 10 9 7 33 33 H 1.09003 * 109.47438 * 197.73095 * 18 17 15 34 34 H 1.08997 * 109.47301 * 317.73495 * 18 17 15 35 35 H 1.09003 * 109.47049 * 77.73744 * 18 17 15 36 36 H 1.09002 * 110.51191 * 237.28778 * 19 17 15 37 37 H 1.09002 * 110.51072 * 0.02562 * 19 17 15 38 38 H 1.09007 * 110.37073 * 94.85598 * 20 19 17 39 39 H 1.08998 * 110.37015 * 217.19114 * 20 19 17 40 40 H 1.08997 * 110.37390 * 200.66093 * 22 21 20 41 41 H 1.09005 * 110.46566 * 78.36610 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1053 -0.8920 -1.3427 7 6 5.4280 -1.3158 -0.7580 8 1 6.1046 -0.5743 -0.3595 9 6 5.7748 -2.6500 -0.7326 10 7 4.9511 -3.5528 -1.2182 11 14 7.4147 -3.1751 -0.0084 12 1 8.1525 -1.9771 0.4666 13 1 7.1797 -4.0968 1.1321 14 1 8.2157 -3.8691 -1.0486 15 6 4.2616 1.3338 -2.3217 16 8 4.2650 2.5420 -2.2159 17 6 4.5769 0.6928 -3.6486 18 6 3.3885 -0.1351 -4.1415 19 6 4.9583 1.7669 -4.6918 20 6 6.4078 1.4080 -5.0874 21 8 6.9252 0.6673 -3.9607 22 6 5.8412 -0.1880 -3.5374 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8465 -0.8900 28 1 3.8514 0.5683 0.8411 29 1 3.9785 2.1766 0.0889 30 1 3.2947 -1.3639 -0.7874 31 1 4.0556 -1.1973 -2.3879 32 1 5.1948 -4.4916 -1.2001 33 1 3.7237 -0.8289 -4.9125 34 1 2.9652 -0.6953 -3.3078 35 1 2.6298 0.5291 -4.5555 36 1 4.3001 1.7081 -5.5587 37 1 4.9192 2.7615 -4.2476 38 1 6.4140 0.7883 -5.9841 39 1 6.9928 2.3137 -5.2470 40 1 5.9909 -0.5083 -2.5064 41 1 5.7596 -1.0536 -4.1949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687410171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:42 Heat of formation + Delta-G solvation = -137.119039 kcal Electronic energy + Delta-G solvation = -23017.097389 eV Core-core repulsion = 19703.991730 eV Total energy + Delta-G solvation = -3313.105659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.81813 -39.49595 -38.57072 -36.83804 -34.71620 -34.53932 -31.55406 -30.16734 -29.00695 -27.30810 -27.14599 -25.01639 -24.48332 -23.75346 -22.01980 -19.67159 -18.60981 -17.86488 -17.74708 -17.06559 -16.89298 -16.79278 -16.43070 -16.21981 -15.89596 -15.52340 -15.26564 -14.59894 -14.42908 -13.95476 -13.84328 -13.44052 -13.38309 -13.15328 -12.96919 -12.77753 -12.74894 -12.60700 -12.40940 -12.31188 -12.07680 -11.95575 -11.68380 -11.65912 -11.30858 -10.90936 -10.61808 -10.53159 -10.31961 -9.42894 -8.17941 -6.28048 1.39662 1.44097 1.53368 1.70863 2.27640 2.44786 2.93873 3.06741 3.20706 3.48736 3.65424 4.01699 4.10619 4.15311 4.24425 4.26374 4.37817 4.40812 4.53517 4.56467 4.60600 4.69742 4.75411 4.84071 4.85194 4.87056 4.91142 4.97042 5.02887 5.21249 5.22436 5.35878 5.43342 5.70285 5.86672 5.95500 6.11701 6.29578 6.62510 6.84658 7.28409 7.41590 8.86665 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.010474 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.344229 B = 2672.687871 C = 4343.100417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.059 3.941 4 C 0.112 3.888 5 N -0.589 5.589 6 C 0.238 3.762 7 C -0.543 4.543 8 H 0.047 0.953 9 C 0.033 3.967 10 N -0.907 5.907 11 Si 0.944 3.056 12 H -0.276 1.276 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.523 3.477 16 O -0.593 6.593 17 C -0.109 4.109 18 C -0.137 4.137 19 C -0.136 4.136 20 C 0.039 3.961 21 O -0.403 6.403 22 C 0.028 3.972 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.268 0.732 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.217 6.289 -4.326 9.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.019 4.019 4 C -0.011 4.011 5 N -0.318 5.318 6 C 0.117 3.883 7 C -0.581 4.581 8 H 0.065 0.935 9 C -0.169 4.169 10 N -0.545 5.545 11 Si 0.770 3.230 12 H -0.200 1.200 13 H -0.202 1.202 14 H -0.202 1.202 15 C 0.312 3.688 16 O -0.476 6.476 17 C -0.112 4.112 18 C -0.194 4.194 19 C -0.174 4.174 20 C -0.037 4.037 21 O -0.323 6.323 22 C -0.048 4.048 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.142 0.858 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.932 6.529 -4.176 9.760 hybrid contribution 0.457 -0.377 0.551 0.809 sum -5.475 6.152 -3.625 8.998 Atomic orbital electron populations 1.22877 0.80004 1.03372 1.00628 1.88021 1.21131 1.28057 1.95462 1.22897 0.93285 0.84864 1.00827 1.21486 0.93086 0.99275 0.87251 1.48067 1.63678 1.09193 1.10821 1.19604 0.95588 0.74025 0.99045 1.21565 1.03483 0.92399 1.40648 0.93489 1.25472 0.99750 0.96390 0.95311 1.69990 1.37100 1.01858 1.45545 0.85722 0.80556 0.78222 0.78540 1.20029 1.20235 1.20232 1.20595 0.75289 0.86387 0.86526 1.90511 1.55939 1.15423 1.85707 1.22015 0.98592 0.97573 0.93058 1.22050 0.95736 0.99548 1.02095 1.23047 0.97590 0.98775 0.98005 1.23638 0.93710 0.96780 0.89612 1.89103 1.37074 1.56951 1.49137 1.24426 0.83756 0.91633 1.04968 0.92566 0.93788 0.89236 0.90124 0.94050 0.90276 0.89286 0.95617 0.92344 0.92239 0.89949 0.91955 0.90566 0.87486 0.90397 0.90363 0.88066 0.85785 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -14.24 9.42 -148.98 -1.40 -15.65 16 3 C 0.06 1.88 6.28 71.98 0.45 2.34 16 4 C 0.11 4.28 5.86 86.38 0.51 4.79 16 5 N -0.59 -25.46 2.40 -826.15 -1.99 -27.45 16 6 C 0.24 11.36 3.73 85.64 0.32 11.68 16 7 C -0.54 -28.34 6.62 25.60 0.17 -28.17 16 8 H 0.05 2.57 7.81 -2.91 -0.02 2.54 16 9 C 0.03 1.71 5.46 84.65 0.46 2.17 16 10 N -0.91 -48.92 13.29 21.44 0.28 -48.64 16 11 Si 0.94 42.45 29.54 68.60 2.03 44.47 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 15 C 0.52 22.36 6.47 87.66 0.57 22.93 16 16 O -0.59 -27.02 14.84 -3.03 -0.04 -27.06 16 17 C -0.11 -4.04 0.69 -51.91 -0.04 -4.07 16 18 C -0.14 -4.40 7.97 71.98 0.57 -3.83 16 19 C -0.14 -4.22 6.29 31.61 0.20 -4.02 16 20 C 0.04 1.17 7.63 72.48 0.55 1.72 16 21 O -0.40 -16.43 11.65 -148.98 -1.74 -18.16 16 22 C 0.03 1.17 5.59 72.49 0.41 1.57 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 3.12 8.07 -2.38 -0.02 3.10 16 29 H 0.09 3.31 7.35 -2.38 -0.02 3.29 16 30 H 0.03 1.35 7.01 -2.39 -0.02 1.33 16 31 H 0.06 2.78 3.43 -2.39 -0.01 2.78 16 32 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.08 2.33 7.68 -2.39 -0.02 2.31 16 34 H 0.06 2.30 5.31 -2.39 -0.01 2.28 16 35 H 0.08 2.07 7.99 -2.39 -0.02 2.05 16 36 H 0.11 2.57 7.66 -2.39 -0.02 2.55 16 37 H 0.08 2.69 6.51 -2.39 -0.02 2.68 16 38 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.12 6.04 3.55 -2.39 -0.01 6.04 16 41 H 0.07 2.59 7.58 -2.38 -0.02 2.57 16 Total: -1.00 -63.19 321.32 3.58 -59.61 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 1.02 Total: 23.85 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.42 Total: 9.02 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -1.70 Total: -76.09 kcal Atomic # 8 Polarization: -57.69 SS G_CDS: -3.18 Total: -60.87 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -63.19 3.58 -59.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687410171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.507 kcal (2) G-P(sol) polarization free energy of solvation -63.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds