Wall clock time and date at job start Mon Mar 30 2020 04:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47332 * 110.92942 * 2 1 4 4 C 1.53241 * 109.11164 * 172.82616 * 3 2 1 5 5 N 1.47087 * 108.68257 * 53.75014 * 4 3 2 6 6 C 1.34774 * 120.87914 * 128.69294 * 5 4 3 7 7 O 1.21443 * 120.00069 * 173.55899 * 6 5 4 8 8 C 1.48830 * 120.00254 * 353.56322 * 6 5 4 9 9 O 1.21497 * 120.00037 * 353.60623 * 8 6 5 10 10 N 1.34780 * 120.00119 * 173.60180 * 8 6 5 11 11 C 1.36120 * 120.00084 * 179.97438 * 10 8 6 12 12 H 1.07998 * 119.99758 * 0.02562 * 11 10 8 13 13 C 1.39589 * 119.99688 * 180.02562 * 11 10 8 14 14 N 1.31007 * 120.00277 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99726 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47253 * 89.99831 * 15 13 11 17 17 H 1.48496 * 109.47200 * 210.00075 * 15 13 11 18 18 H 1.48500 * 109.47178 * 330.00111 * 15 13 11 19 19 C 1.47074 * 118.23434 * 308.71752 * 5 4 3 20 20 C 1.46901 * 111.00557 * 235.62422 * 2 1 3 21 21 H 1.08998 * 109.51580 * 67.27438 * 20 2 1 22 22 C 1.53003 * 109.48816 * 307.20943 * 20 2 1 23 23 O 1.42895 * 109.47232 * 296.50150 * 22 20 2 24 24 H 1.09004 * 109.46598 * 189.69700 * 1 2 3 25 25 H 1.08993 * 109.47307 * 309.69318 * 1 2 3 26 26 H 1.08992 * 109.47097 * 69.69677 * 1 2 3 27 27 H 1.09002 * 109.75244 * 52.85093 * 3 2 1 28 28 H 1.09001 * 109.46332 * 292.62880 * 3 2 1 29 29 H 1.09001 * 109.63316 * 293.94433 * 4 3 2 30 30 H 1.09004 * 109.62789 * 173.55613 * 4 3 2 31 31 H 0.97006 * 119.99702 * 0.02562 * 10 8 6 32 32 H 0.96997 * 120.00123 * 179.97438 * 14 13 11 33 33 H 1.09011 * 109.62465 * 170.89419 * 19 5 4 34 34 H 1.09003 * 109.62801 * 291.27715 * 19 5 4 35 35 H 1.09003 * 109.47202 * 56.49838 * 22 20 2 36 36 H 1.09000 * 109.47194 * 176.49347 * 22 20 2 37 37 H 0.96704 * 113.99934 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3761 0.0000 4 6 3.5163 1.3315 0.1808 5 7 4.0869 0.4450 -0.8448 6 6 5.1052 0.8565 -1.6259 7 8 5.6415 0.0756 -2.3858 8 6 5.5725 2.2678 -1.5573 9 8 4.9643 3.0772 -0.8856 10 7 6.6705 2.6482 -2.2402 11 6 7.0976 3.9391 -2.1779 12 1 6.5569 4.6585 -1.5808 13 6 8.2344 4.3330 -2.8856 14 7 8.8900 3.4604 -3.6103 15 14 8.8210 6.1044 -2.7995 16 1 9.7747 6.2558 -1.6714 17 1 9.4976 6.4642 -4.0714 18 1 7.6568 7.0016 -2.5871 19 6 3.5164 -0.9022 -0.9955 20 6 1.9955 -0.7743 -1.1319 21 1 1.7556 -0.2645 -2.0649 22 6 1.3642 -2.1680 -1.1346 23 8 1.7477 -2.8670 0.0512 24 1 -0.3633 -1.0130 0.1731 25 1 -0.3633 0.6563 0.7907 26 1 -0.3633 0.3566 -0.9637 27 1 1.5482 1.9415 0.8177 28 1 1.7557 1.8566 -0.9486 29 1 3.7562 0.9467 1.1720 30 1 3.9280 2.3345 0.0680 31 1 7.1559 2.0020 -2.7768 32 1 9.6797 3.7343 -4.1024 33 1 3.9256 -1.3753 -1.8883 34 1 3.7592 -1.5028 -0.1189 35 1 0.2786 -2.0751 -1.1665 36 1 1.7074 -2.7206 -2.0093 37 1 1.3831 -3.7603 0.1165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687623922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:55 Heat of formation + Delta-G solvation = -84.351612 kcal Electronic energy + Delta-G solvation = -21597.816430 eV Core-core repulsion = 18183.458595 eV Total energy + Delta-G solvation = -3414.357835 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10446 -38.61822 -37.12443 -36.33251 -34.78231 -33.77831 -31.60043 -31.39634 -28.57989 -26.63271 -25.77341 -24.41073 -22.63577 -22.01496 -19.97924 -19.01441 -18.11308 -17.44999 -16.60134 -16.32289 -15.68357 -15.10880 -15.02659 -14.65338 -14.56309 -14.27006 -13.96598 -13.70914 -13.64261 -13.08173 -12.89411 -12.49897 -12.26713 -11.88208 -11.84671 -11.47147 -11.23150 -11.10482 -10.92698 -10.89648 -10.52415 -10.45272 -10.11365 -10.00801 -9.76863 -8.48233 -8.30681 -8.06421 -7.81118 -6.73077 -4.05891 2.41049 3.12476 3.12758 3.18007 3.32053 3.86833 4.01802 4.16007 4.21950 4.76435 4.88083 4.91645 5.13115 5.14247 5.22219 5.33954 5.38092 5.42632 5.56266 5.68500 5.76254 5.81551 5.84357 5.94482 6.16683 6.35980 6.68172 6.92676 7.04795 7.13146 7.26844 7.54364 7.67565 7.86514 8.31665 8.59424 8.90963 9.25324 9.79548 10.41203 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.039353 B = 0.004279 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.342039 B = 6542.230142 C = 7060.168853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.531 5.531 3 C 0.045 3.955 4 C 0.053 3.947 5 N -0.594 5.594 6 C 0.515 3.485 7 O -0.551 6.551 8 C 0.392 3.608 9 O -0.584 6.584 10 N -0.491 5.491 11 C -0.307 4.307 12 H 0.115 0.885 13 C 0.033 3.967 14 N -0.865 5.865 15 Si 0.940 3.060 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.264 1.264 19 C 0.123 3.877 20 C 0.073 3.927 21 H 0.055 0.945 22 C 0.084 3.916 23 O -0.554 6.554 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.021 0.979 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.176 0.824 31 H 0.406 0.594 32 H 0.282 0.718 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.528 -8.003 4.260 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.256 5.256 3 C -0.083 4.083 4 C -0.068 4.068 5 N -0.328 5.328 6 C 0.301 3.699 7 O -0.428 6.428 8 C 0.178 3.822 9 O -0.475 6.475 10 N -0.123 5.123 11 C -0.438 4.438 12 H 0.133 0.867 13 C -0.175 4.175 14 N -0.503 5.503 15 Si 0.766 3.234 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.188 1.188 19 C 0.000 4.000 20 C -0.036 4.036 21 H 0.073 0.927 22 C 0.005 3.995 23 O -0.358 6.358 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.191 0.809 31 H 0.241 0.759 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.935 -7.562 4.668 15.694 hybrid contribution -0.222 0.086 -1.190 1.214 sum -13.158 -7.476 3.477 15.528 Atomic orbital electron populations 1.22402 0.87997 1.02094 0.99969 1.62109 1.07063 1.13926 1.42523 1.22617 0.96629 0.88130 1.00892 1.23525 0.91674 1.01658 0.89910 1.47882 1.34183 1.14650 1.36057 1.20535 0.79920 0.89542 0.79905 1.90672 1.56175 1.56193 1.39784 1.18920 0.86253 0.87755 0.89269 1.90016 1.57698 1.53097 1.46652 1.41588 1.21181 1.11523 1.38006 1.19927 1.09434 0.86273 1.28155 0.86733 1.25623 0.95860 1.00907 0.95109 1.69480 1.18063 1.35579 1.27142 0.85700 0.79174 0.80597 0.77977 1.19797 1.20491 1.18816 1.21577 0.90257 0.84699 1.03447 1.22095 0.96017 0.92868 0.92632 0.92745 1.22210 0.97705 0.91994 0.87601 1.86638 1.75901 1.31204 1.42010 0.91373 0.91425 0.96089 0.89753 0.94531 0.92292 0.80897 0.75864 0.90773 0.89395 0.90021 0.93281 0.93092 0.78202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.87 60.06 0.53 0.79 16 2 N -0.53 -7.32 4.66 -234.22 -1.09 -8.41 16 3 C 0.05 0.68 5.65 -3.46 -0.02 0.66 16 4 C 0.05 0.95 6.44 -3.60 -0.02 0.93 16 5 N -0.59 -11.50 3.01 -173.20 -0.52 -12.02 16 6 C 0.51 11.74 7.74 -11.88 -0.09 11.65 16 7 O -0.55 -13.41 15.97 5.42 0.09 -13.32 16 8 C 0.39 9.80 7.71 -11.87 -0.09 9.71 16 9 O -0.58 -14.82 12.66 5.37 0.07 -14.75 16 10 N -0.49 -12.98 5.24 -11.59 -0.06 -13.04 16 11 C -0.31 -8.27 9.67 -15.14 -0.15 -8.42 16 12 H 0.11 3.11 7.15 -52.49 -0.38 2.74 16 13 C 0.03 0.83 5.51 -17.40 -0.10 0.74 16 14 N -0.87 -22.86 13.03 55.53 0.72 -22.13 16 15 Si 0.94 19.66 29.56 -169.99 -5.02 14.63 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 17 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 C 0.12 2.04 5.76 -3.61 -0.02 2.02 16 20 C 0.07 1.01 2.39 -67.59 -0.16 0.85 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 C 0.08 0.86 6.20 37.16 0.23 1.10 16 23 O -0.55 -5.96 12.67 -35.23 -0.45 -6.40 16 24 H 0.07 0.66 6.47 -51.93 -0.34 0.32 16 25 H 0.07 0.67 7.99 -51.93 -0.41 0.25 16 26 H 0.02 0.22 8.13 -51.93 -0.42 -0.21 16 27 H 0.08 1.09 8.01 -51.93 -0.42 0.68 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.18 3.54 3.79 -56.74 -0.22 3.33 16 31 H 0.41 10.89 7.37 -40.82 -0.30 10.59 16 32 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 33 H 0.09 1.50 7.11 -51.92 -0.37 1.13 16 34 H 0.08 1.38 7.43 -51.93 -0.39 0.99 16 35 H 0.05 0.43 6.23 -51.93 -0.32 0.10 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.37 2.17 9.12 45.56 0.42 2.58 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -30.69 303.71 -5.54 -36.24 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -3.97 Total: 14.61 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: 0.11 Total: 20.02 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.95 Total: -55.60 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.29 Total: -34.48 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.69 -5.54 -36.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687623922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.114 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds