Wall clock time and date at job start Mon Mar 30 2020 04:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47332 * 110.92942 * 2 1 4 4 C 1.53241 * 109.11164 * 172.82616 * 3 2 1 5 5 N 1.47087 * 108.68257 * 53.75014 * 4 3 2 6 6 C 1.34774 * 120.87914 * 128.69294 * 5 4 3 7 7 O 1.21443 * 120.00069 * 173.55899 * 6 5 4 8 8 C 1.48830 * 120.00254 * 353.56322 * 6 5 4 9 9 O 1.21497 * 120.00037 * 353.60623 * 8 6 5 10 10 N 1.34780 * 120.00119 * 173.60180 * 8 6 5 11 11 C 1.36120 * 120.00084 * 179.97438 * 10 8 6 12 12 H 1.07998 * 119.99758 * 0.02562 * 11 10 8 13 13 C 1.39589 * 119.99688 * 180.02562 * 11 10 8 14 14 N 1.31007 * 120.00277 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99726 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47253 * 89.99831 * 15 13 11 17 17 H 1.48496 * 109.47200 * 210.00075 * 15 13 11 18 18 H 1.48500 * 109.47178 * 330.00111 * 15 13 11 19 19 C 1.47074 * 118.23434 * 308.71752 * 5 4 3 20 20 C 1.46901 * 111.00557 * 235.62422 * 2 1 3 21 21 H 1.08998 * 109.51580 * 67.27438 * 20 2 1 22 22 C 1.53003 * 109.48816 * 307.20943 * 20 2 1 23 23 O 1.42895 * 109.47232 * 296.50150 * 22 20 2 24 24 H 1.09004 * 109.46598 * 189.69700 * 1 2 3 25 25 H 1.08993 * 109.47307 * 309.69318 * 1 2 3 26 26 H 1.08992 * 109.47097 * 69.69677 * 1 2 3 27 27 H 1.09002 * 109.75244 * 52.85093 * 3 2 1 28 28 H 1.09001 * 109.46332 * 292.62880 * 3 2 1 29 29 H 1.09001 * 109.63316 * 293.94433 * 4 3 2 30 30 H 1.09004 * 109.62789 * 173.55613 * 4 3 2 31 31 H 0.97006 * 119.99702 * 0.02562 * 10 8 6 32 32 H 0.96997 * 120.00123 * 179.97438 * 14 13 11 33 33 H 1.09011 * 109.62465 * 170.89419 * 19 5 4 34 34 H 1.09003 * 109.62801 * 291.27715 * 19 5 4 35 35 H 1.09003 * 109.47202 * 56.49838 * 22 20 2 36 36 H 1.09000 * 109.47194 * 176.49347 * 22 20 2 37 37 H 0.96704 * 113.99934 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3761 0.0000 4 6 3.5163 1.3315 0.1808 5 7 4.0869 0.4450 -0.8448 6 6 5.1052 0.8565 -1.6259 7 8 5.6415 0.0756 -2.3858 8 6 5.5725 2.2678 -1.5573 9 8 4.9643 3.0772 -0.8856 10 7 6.6705 2.6482 -2.2402 11 6 7.0976 3.9391 -2.1779 12 1 6.5569 4.6585 -1.5808 13 6 8.2344 4.3330 -2.8856 14 7 8.8900 3.4604 -3.6103 15 14 8.8210 6.1044 -2.7995 16 1 9.7747 6.2558 -1.6714 17 1 9.4976 6.4642 -4.0714 18 1 7.6568 7.0016 -2.5871 19 6 3.5164 -0.9022 -0.9955 20 6 1.9955 -0.7743 -1.1319 21 1 1.7556 -0.2645 -2.0649 22 6 1.3642 -2.1680 -1.1346 23 8 1.7477 -2.8670 0.0512 24 1 -0.3633 -1.0130 0.1731 25 1 -0.3633 0.6563 0.7907 26 1 -0.3633 0.3566 -0.9637 27 1 1.5482 1.9415 0.8177 28 1 1.7557 1.8566 -0.9486 29 1 3.7562 0.9467 1.1720 30 1 3.9280 2.3345 0.0680 31 1 7.1559 2.0020 -2.7768 32 1 9.6797 3.7343 -4.1024 33 1 3.9256 -1.3753 -1.8883 34 1 3.7592 -1.5028 -0.1189 35 1 0.2786 -2.0751 -1.1665 36 1 1.7074 -2.7206 -2.0093 37 1 1.3831 -3.7603 0.1165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687623922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:55 Heat of formation + Delta-G solvation = -111.349380 kcal Electronic energy + Delta-G solvation = -21598.987141 eV Core-core repulsion = 18183.458595 eV Total energy + Delta-G solvation = -3415.528546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74531 -40.04220 -38.93936 -37.38256 -36.48974 -35.38579 -33.50305 -32.66829 -29.86954 -28.11778 -27.28372 -25.77915 -24.04049 -23.48485 -21.37372 -20.70769 -19.94570 -18.38770 -18.28221 -17.89745 -17.07859 -16.74172 -16.70880 -16.01829 -15.85948 -15.62958 -15.61781 -15.20607 -14.89465 -14.58053 -14.18758 -13.89062 -13.74897 -13.42528 -13.06109 -12.96820 -12.65460 -12.55508 -12.40741 -12.20948 -12.09743 -12.00013 -11.74779 -11.62720 -10.87796 -10.31216 -9.88730 -9.67531 -9.26962 -8.67753 -6.12656 0.53601 1.41400 1.47698 1.55646 1.69719 2.26523 2.32051 2.81211 3.06170 3.13412 3.35703 3.77437 3.85835 3.90338 4.06340 4.24067 4.26563 4.41408 4.47711 4.57836 4.59928 4.63245 4.74570 4.86864 5.01152 5.04189 5.12744 5.26248 5.41461 5.66043 5.95665 6.01817 6.21312 6.34410 6.75488 6.93929 7.02311 7.24665 7.78213 8.47738 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.039353 B = 0.004279 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.342039 B = 6542.230142 C = 7060.168853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.538 5.538 3 C 0.053 3.947 4 C 0.052 3.948 5 N -0.585 5.585 6 C 0.513 3.487 7 O -0.572 6.572 8 C 0.390 3.610 9 O -0.592 6.592 10 N -0.504 5.504 11 C -0.343 4.343 12 H 0.105 0.895 13 C -0.004 4.004 14 N -0.895 5.895 15 Si 1.012 2.988 16 H -0.264 1.264 17 H -0.268 1.268 18 H -0.261 1.261 19 C 0.123 3.877 20 C 0.072 3.928 21 H 0.047 0.953 22 C 0.091 3.909 23 O -0.575 6.575 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.026 0.974 27 H 0.107 0.893 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.151 0.849 31 H 0.400 0.600 32 H 0.290 0.710 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.122 -8.276 4.875 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.075 4.075 4 C -0.069 4.069 5 N -0.317 5.317 6 C 0.298 3.702 7 O -0.453 6.453 8 C 0.176 3.824 9 O -0.483 6.483 10 N -0.136 5.136 11 C -0.473 4.473 12 H 0.123 0.877 13 C -0.208 4.208 14 N -0.532 5.532 15 Si 0.832 3.168 16 H -0.189 1.189 17 H -0.193 1.193 18 H -0.185 1.185 19 C 0.000 4.000 20 C -0.037 4.037 21 H 0.065 0.935 22 C 0.012 3.988 23 O -0.382 6.382 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.045 0.955 27 H 0.126 0.874 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.166 0.834 31 H 0.234 0.766 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -14.584 -7.871 5.313 17.404 hybrid contribution 0.179 0.064 -1.296 1.310 sum -14.406 -7.808 4.017 16.871 Atomic orbital electron populations 1.22484 0.85630 1.03491 1.00735 1.62105 1.09143 1.12701 1.42412 1.22499 0.94341 0.89458 1.01203 1.23417 0.93905 0.99915 0.89689 1.48008 1.32736 1.16011 1.34965 1.20180 0.80870 0.88499 0.80606 1.90652 1.57251 1.56280 1.41068 1.19425 0.85710 0.88865 0.88431 1.90059 1.57760 1.53967 1.46533 1.41696 1.21867 1.11482 1.38603 1.20061 1.10861 0.86509 1.29873 0.87744 1.26585 0.95104 1.05271 0.93878 1.69552 1.18532 1.37623 1.27499 0.84666 0.78651 0.74935 0.78512 1.18918 1.19277 1.18543 1.21758 0.92466 0.82698 1.03035 1.22115 0.93865 0.95336 0.92409 0.93483 1.22139 0.98658 0.89899 0.88074 1.86567 1.76599 1.32987 1.42076 0.89771 0.90320 0.95534 0.87440 0.95748 0.91423 0.83352 0.76556 0.90019 0.90163 0.89979 0.90883 0.91782 0.75616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 8.87 127.69 1.13 1.56 16 2 N -0.54 -13.52 4.66 -894.94 -4.17 -17.69 16 3 C 0.05 1.51 5.65 86.30 0.49 2.00 16 4 C 0.05 1.82 6.44 86.35 0.56 2.37 16 5 N -0.58 -22.75 3.01 -820.20 -2.47 -25.22 16 6 C 0.51 24.03 7.74 87.08 0.67 24.70 16 7 O -0.57 -28.66 15.97 -3.54 -0.06 -28.72 16 8 C 0.39 20.16 7.71 87.08 0.67 20.83 16 9 O -0.59 -30.98 12.66 -3.70 -0.05 -31.03 16 10 N -0.50 -27.71 5.24 -308.87 -1.62 -29.33 16 11 C -0.34 -19.02 9.67 84.35 0.82 -18.21 16 12 H 0.10 5.86 7.15 -2.91 -0.02 5.84 16 13 C 0.00 -0.19 5.51 85.14 0.47 0.28 16 14 N -0.89 -47.88 13.03 21.77 0.28 -47.59 16 15 Si 1.01 40.12 29.56 68.60 2.03 42.15 16 16 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 17 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 19 C 0.12 3.97 5.76 86.35 0.50 4.47 16 20 C 0.07 1.86 2.39 44.99 0.11 1.96 16 21 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 22 C 0.09 1.60 6.20 71.98 0.45 2.04 16 23 O -0.57 -10.63 12.67 -148.98 -1.89 -12.52 16 24 H 0.08 1.28 6.47 -2.39 -0.02 1.26 16 25 H 0.08 1.27 7.99 -2.39 -0.02 1.25 16 26 H 0.03 0.46 8.13 -2.39 -0.02 0.44 16 27 H 0.11 2.54 8.01 -2.39 -0.02 2.52 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.15 6.17 3.79 -78.55 -0.30 5.87 16 31 H 0.40 22.45 7.37 -92.70 -0.68 21.76 16 32 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 33 H 0.08 2.72 7.11 -2.38 -0.02 2.71 16 34 H 0.08 2.68 7.43 -2.39 -0.02 2.67 16 35 H 0.07 0.96 6.23 -2.39 -0.01 0.95 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.39 3.30 9.12 -74.05 -0.68 2.63 16 Total: -1.00 -67.06 303.71 -2.61 -69.67 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.53 Total: 38.27 kcal Atomic # 6 Polarization: 36.16 SS G_CDS: 5.86 Total: 42.01 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -7.98 Total: -119.83 kcal Atomic # 8 Polarization: -70.28 SS G_CDS: -1.99 Total: -72.27 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -67.06 -2.61 -69.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687623922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.682 kcal (2) G-P(sol) polarization free energy of solvation -67.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds