Wall clock time and date at job start Mon Mar 30 2020 04:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46298 * 113.99843 * 2 1 4 4 C 1.46847 * 110.99811 * 239.99650 * 3 2 1 5 5 C 1.53034 * 109.51345 * 185.84709 * 4 3 2 6 6 C 1.53123 * 109.27992 * 300.80438 * 5 4 3 7 7 N 1.46500 * 109.57501 * 177.60191 * 6 5 4 8 8 C 1.34774 * 119.99952 * 85.29823 * 7 6 5 9 9 O 1.21443 * 119.99944 * 0.02562 * 8 7 6 10 10 C 1.48832 * 120.00226 * 179.97438 * 8 7 6 11 11 O 1.21507 * 119.99658 * 0.02562 * 10 8 7 12 12 N 1.34774 * 120.00226 * 180.02562 * 10 8 7 13 13 C 1.36120 * 119.99901 * 180.02562 * 12 10 8 14 14 H 1.07997 * 120.00149 * 359.97438 * 13 12 10 15 15 C 1.39586 * 119.99938 * 180.02562 * 13 12 10 16 16 N 1.31016 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00086 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47050 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47381 * 119.99833 * 17 15 13 20 20 H 1.48503 * 109.46888 * 239.99754 * 17 15 13 21 21 C 1.53127 * 109.15019 * 57.67185 * 6 5 4 22 22 C 1.46843 * 110.99993 * 4.20907 * 3 2 1 23 23 H 1.09005 * 109.47009 * 300.00090 * 1 2 3 24 24 H 1.08992 * 109.46920 * 60.00045 * 1 2 3 25 25 H 1.09007 * 109.46914 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46481 * 305.85861 * 4 3 2 27 27 H 1.08994 * 109.46283 * 65.83715 * 4 3 2 28 28 H 1.08997 * 109.50952 * 60.75924 * 5 4 3 29 29 H 1.08998 * 109.50459 * 180.87821 * 5 4 3 30 30 H 1.09003 * 109.53012 * 297.76758 * 6 5 4 31 31 H 0.96998 * 120.00140 * 265.29622 * 7 6 5 32 32 H 0.96998 * 119.99908 * 0.02562 * 12 10 8 33 33 H 0.96996 * 120.00343 * 180.02562 * 16 15 13 34 34 H 1.08997 * 109.49981 * 182.39822 * 21 6 5 35 35 H 1.08998 * 109.53089 * 62.30397 * 21 6 5 36 36 H 1.08993 * 109.46313 * 294.17547 * 22 3 2 37 37 H 1.09000 * 109.46480 * 54.15657 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.8643 1.5384 -1.1872 5 6 3.5831 2.8854 -1.0817 6 6 2.5446 4.0053 -0.9722 7 7 3.2259 5.2925 -0.8134 8 6 3.6442 5.9721 -1.8995 9 8 3.4561 5.5176 -3.0098 10 6 4.3358 7.2800 -1.7382 11 8 4.5236 7.7350 -0.6273 12 7 4.7537 7.9598 -2.8243 13 6 5.3867 9.1558 -2.6767 14 1 5.5536 9.5602 -1.6893 15 6 5.8191 9.8602 -3.8016 16 7 5.6161 9.3699 -4.9995 17 14 6.6870 11.5018 -3.5991 18 1 6.7914 11.8317 -2.1550 19 1 8.0478 11.4182 -4.1878 20 1 5.9114 12.5608 -4.2936 21 6 1.6518 3.7453 0.2443 22 6 0.9891 2.3733 0.1006 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.6011 0.7377 -1.2512 27 1 2.2395 1.5292 -2.0802 28 1 4.2187 2.8904 -0.1963 29 1 4.1946 3.0421 -1.9703 30 1 1.9338 4.0254 -1.8748 31 1 3.3758 5.6557 0.0734 32 1 4.6034 7.5968 -3.7111 33 1 5.9168 9.8591 -5.7811 34 1 0.8835 4.5162 0.3032 35 1 2.2566 3.7642 1.1509 36 1 0.3730 2.3600 -0.7984 37 1 0.3639 2.1791 0.9722 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692125409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:38 Heat of formation + Delta-G solvation = -67.611663 kcal Electronic energy + Delta-G solvation = -20841.511987 eV Core-core repulsion = 17427.880050 eV Total energy + Delta-G solvation = -3413.631936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00771 -38.89732 -37.32292 -36.21032 -34.43103 -33.46932 -31.45229 -31.29679 -29.86735 -27.07191 -25.90469 -23.83978 -23.27688 -21.90961 -20.18928 -19.31411 -18.34805 -17.87758 -17.01176 -16.09116 -15.85780 -15.49609 -15.16125 -14.89527 -14.54738 -14.26455 -14.11368 -13.86875 -13.57737 -13.31824 -12.86579 -12.70765 -12.39360 -12.17768 -11.80307 -11.72477 -11.51636 -11.24363 -11.06184 -10.85563 -10.65580 -10.53376 -10.42975 -10.36421 -9.75960 -8.84682 -8.79919 -8.30988 -8.25568 -6.70139 -4.02314 2.39163 2.40915 3.11855 3.13991 3.20195 3.33530 4.02217 4.10619 4.22525 4.43312 4.68813 4.71863 4.89114 4.92742 4.97293 5.01287 5.08623 5.16014 5.24141 5.30013 5.37953 5.44597 5.57445 5.62339 5.80664 5.92864 6.01431 6.17492 6.42301 6.72595 6.88128 7.28370 7.64887 7.83754 8.29050 8.57624 8.93055 9.28569 9.81752 10.44728 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.057792 B = 0.003264 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.380886 B = 8576.778591 C = 8785.792407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.242 6.242 3 N -0.330 5.330 4 C 0.033 3.967 5 C -0.126 4.126 6 C 0.141 3.859 7 N -0.710 5.710 8 C 0.515 3.485 9 O -0.546 6.546 10 C 0.393 3.607 11 O -0.597 6.597 12 N -0.499 5.499 13 C -0.305 4.305 14 H 0.113 0.887 15 C 0.031 3.969 16 N -0.868 5.868 17 Si 0.938 3.062 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.121 4.121 22 C 0.010 3.990 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.411 0.589 32 H 0.405 0.595 33 H 0.280 0.720 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.934 -13.410 7.134 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.246 6.246 3 N -0.097 5.097 4 C -0.096 4.096 5 C -0.165 4.165 6 C 0.036 3.964 7 N -0.363 5.363 8 C 0.300 3.700 9 O -0.423 6.423 10 C 0.177 3.823 11 O -0.486 6.486 12 N -0.133 5.133 13 C -0.436 4.436 14 H 0.131 0.869 15 C -0.176 4.176 16 N -0.506 5.506 17 Si 0.764 3.236 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.159 4.159 22 C -0.119 4.119 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.247 0.753 32 H 0.240 0.760 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.499 -13.538 7.251 17.552 hybrid contribution -0.418 0.799 -0.980 1.332 sum -8.917 -12.739 6.270 16.766 Atomic orbital electron populations 1.23067 0.83434 1.03182 1.00273 1.91223 1.18472 1.18211 1.96728 1.69438 1.12975 0.90577 1.36730 1.22579 0.97020 0.98852 0.91131 1.22026 0.98531 0.91628 1.04304 1.20994 0.93361 0.83193 0.98900 1.45669 1.59715 1.20621 1.10301 1.20732 0.78790 0.86402 0.84100 1.90686 1.56336 1.70217 1.25076 1.18939 0.90021 0.87186 0.86122 1.90586 1.63203 1.70471 1.24341 1.41577 1.45529 1.17915 1.08255 1.19938 1.32660 0.95429 0.95551 0.86892 1.25598 0.97196 1.00516 0.94317 1.69489 1.43410 1.39388 0.98337 0.85665 0.78643 0.80081 0.79224 1.18682 1.20254 1.20278 1.21846 0.99839 0.95128 0.99112 1.22873 0.94953 0.91780 1.02330 0.92996 0.93914 0.89028 0.88913 0.93630 0.90127 0.89543 0.89509 0.75296 0.76012 0.90937 0.89635 0.89649 0.93065 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.98 101.05 1.01 1.00 16 2 O -0.24 -2.82 11.64 -13.92 -0.16 -2.98 16 3 N -0.33 -3.74 5.71 -113.82 -0.65 -4.39 16 4 C 0.03 0.38 5.99 -3.84 -0.02 0.35 16 5 C -0.13 -1.58 5.68 -26.65 -0.15 -1.73 16 6 C 0.14 1.85 2.52 -67.80 -0.17 1.68 16 7 N -0.71 -11.54 5.08 -54.31 -0.28 -11.81 16 8 C 0.52 10.83 7.84 -11.88 -0.09 10.73 16 9 O -0.55 -12.36 16.13 5.42 0.09 -12.28 16 10 C 0.39 9.72 7.82 -11.88 -0.09 9.63 16 11 O -0.60 -15.75 16.03 5.36 0.09 -15.66 16 12 N -0.50 -13.18 5.25 -11.59 -0.06 -13.24 16 13 C -0.31 -8.33 9.67 -15.15 -0.15 -8.47 16 14 H 0.11 3.15 7.15 -52.49 -0.38 2.78 16 15 C 0.03 0.79 5.51 -17.40 -0.10 0.69 16 16 N -0.87 -23.07 13.03 55.53 0.72 -22.34 16 17 Si 0.94 19.89 29.56 -169.99 -5.02 14.86 16 18 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 C -0.12 -1.20 5.57 -26.64 -0.15 -1.35 16 22 C 0.01 0.09 4.47 -3.83 -0.02 0.07 16 23 H 0.05 0.36 6.61 -51.93 -0.34 0.01 16 24 H 0.04 0.32 7.09 -51.93 -0.37 -0.05 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.26 7.58 -51.93 -0.39 0.86 16 31 H 0.41 6.31 8.06 -40.82 -0.33 5.98 16 32 H 0.40 10.77 7.35 -40.82 -0.30 10.47 16 33 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.46 7.12 -51.93 -0.37 0.09 16 37 H 0.09 0.74 6.57 -51.93 -0.34 0.40 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -30.93 311.61 -5.42 -36.35 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -4.91 Total: 14.18 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 0.07 Total: 12.61 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.26 Total: -51.78 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: 0.01 Total: -30.92 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.93 -5.42 -36.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692125409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.262 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds