Wall clock time and date at job start Mon Mar 30 2020 04:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46298 * 113.99843 * 2 1 4 4 C 1.46847 * 110.99811 * 239.99650 * 3 2 1 5 5 C 1.53034 * 109.51345 * 185.84709 * 4 3 2 6 6 C 1.53123 * 109.27992 * 300.80438 * 5 4 3 7 7 N 1.46500 * 109.57501 * 177.60191 * 6 5 4 8 8 C 1.34774 * 119.99952 * 85.29823 * 7 6 5 9 9 O 1.21443 * 119.99944 * 0.02562 * 8 7 6 10 10 C 1.48832 * 120.00226 * 179.97438 * 8 7 6 11 11 O 1.21507 * 119.99658 * 0.02562 * 10 8 7 12 12 N 1.34774 * 120.00226 * 180.02562 * 10 8 7 13 13 C 1.36120 * 119.99901 * 180.02562 * 12 10 8 14 14 H 1.07997 * 120.00149 * 359.97438 * 13 12 10 15 15 C 1.39586 * 119.99938 * 180.02562 * 13 12 10 16 16 N 1.31016 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00086 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47050 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47381 * 119.99833 * 17 15 13 20 20 H 1.48503 * 109.46888 * 239.99754 * 17 15 13 21 21 C 1.53127 * 109.15019 * 57.67185 * 6 5 4 22 22 C 1.46843 * 110.99993 * 4.20907 * 3 2 1 23 23 H 1.09005 * 109.47009 * 300.00090 * 1 2 3 24 24 H 1.08992 * 109.46920 * 60.00045 * 1 2 3 25 25 H 1.09007 * 109.46914 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46481 * 305.85861 * 4 3 2 27 27 H 1.08994 * 109.46283 * 65.83715 * 4 3 2 28 28 H 1.08997 * 109.50952 * 60.75924 * 5 4 3 29 29 H 1.08998 * 109.50459 * 180.87821 * 5 4 3 30 30 H 1.09003 * 109.53012 * 297.76758 * 6 5 4 31 31 H 0.96998 * 120.00140 * 265.29622 * 7 6 5 32 32 H 0.96998 * 119.99908 * 0.02562 * 12 10 8 33 33 H 0.96996 * 120.00343 * 180.02562 * 16 15 13 34 34 H 1.08997 * 109.49981 * 182.39822 * 21 6 5 35 35 H 1.08998 * 109.53089 * 62.30397 * 21 6 5 36 36 H 1.08993 * 109.46313 * 294.17547 * 22 3 2 37 37 H 1.09000 * 109.46480 * 54.15657 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.8643 1.5384 -1.1872 5 6 3.5831 2.8854 -1.0817 6 6 2.5446 4.0053 -0.9722 7 7 3.2259 5.2925 -0.8134 8 6 3.6442 5.9721 -1.8995 9 8 3.4561 5.5176 -3.0098 10 6 4.3358 7.2800 -1.7382 11 8 4.5236 7.7350 -0.6273 12 7 4.7537 7.9598 -2.8243 13 6 5.3867 9.1558 -2.6767 14 1 5.5536 9.5602 -1.6893 15 6 5.8191 9.8602 -3.8016 16 7 5.6161 9.3699 -4.9995 17 14 6.6870 11.5018 -3.5991 18 1 6.7914 11.8317 -2.1550 19 1 8.0478 11.4182 -4.1878 20 1 5.9114 12.5608 -4.2936 21 6 1.6518 3.7453 0.2443 22 6 0.9891 2.3733 0.1006 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.6011 0.7377 -1.2512 27 1 2.2395 1.5292 -2.0802 28 1 4.2187 2.8904 -0.1963 29 1 4.1946 3.0421 -1.9703 30 1 1.9338 4.0254 -1.8748 31 1 3.3758 5.6557 0.0734 32 1 4.6034 7.5968 -3.7111 33 1 5.9168 9.8591 -5.7811 34 1 0.8835 4.5162 0.3032 35 1 2.2566 3.7642 1.1509 36 1 0.3730 2.3600 -0.7984 37 1 0.3639 2.1791 0.9722 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692125409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:38 Heat of formation + Delta-G solvation = -92.584072 kcal Electronic energy + Delta-G solvation = -20842.594872 eV Core-core repulsion = 17427.880050 eV Total energy + Delta-G solvation = -3414.714821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50403 -40.14507 -39.02205 -37.34870 -36.33620 -34.80801 -33.44223 -32.17646 -30.97504 -28.04707 -27.57482 -25.31598 -24.19335 -23.23977 -21.40067 -20.83770 -20.29578 -18.87901 -18.53492 -17.71067 -16.93350 -16.73623 -16.47125 -16.37807 -16.04834 -15.73177 -15.31091 -15.02828 -14.78785 -14.59589 -14.24068 -14.10957 -13.68923 -13.44806 -13.00669 -12.97826 -12.64261 -12.55457 -12.38266 -12.22921 -12.08226 -11.95392 -11.83082 -11.67840 -11.45617 -10.28706 -10.25838 -10.20390 -9.62182 -8.66493 -6.11227 0.58988 1.41195 1.45764 1.54712 1.59831 1.82374 2.28938 2.36565 3.14943 3.20252 3.38152 3.55228 3.71858 3.92500 4.00875 4.07259 4.12203 4.29421 4.37859 4.40738 4.48355 4.56445 4.66757 4.73755 4.82963 4.89234 5.02443 5.10693 5.25352 5.34766 5.57031 5.68072 6.12482 6.16112 6.38580 6.81193 7.01295 7.27869 7.79613 8.49543 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.057792 B = 0.003264 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.380886 B = 8576.778591 C = 8785.792407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.262 6.262 3 N -0.340 5.340 4 C 0.040 3.960 5 C -0.120 4.120 6 C 0.137 3.863 7 N -0.687 5.687 8 C 0.522 3.478 9 O -0.565 6.565 10 C 0.390 3.610 11 O -0.616 6.616 12 N -0.512 5.512 13 C -0.344 4.344 14 H 0.099 0.901 15 C -0.005 4.005 16 N -0.896 5.896 17 Si 1.010 2.990 18 H -0.263 1.263 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.112 4.112 22 C 0.011 3.989 23 H 0.065 0.935 24 H 0.046 0.954 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.418 0.582 32 H 0.400 0.600 33 H 0.289 0.711 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.716 -13.739 8.080 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 O -0.268 6.268 3 N -0.108 5.108 4 C -0.089 4.089 5 C -0.159 4.159 6 C 0.033 3.967 7 N -0.339 5.339 8 C 0.305 3.695 9 O -0.444 6.444 10 C 0.175 3.825 11 O -0.505 6.505 12 N -0.146 5.146 13 C -0.474 4.474 14 H 0.117 0.883 15 C -0.209 4.209 16 N -0.534 5.534 17 Si 0.830 3.170 18 H -0.187 1.187 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.150 4.150 22 C -0.118 4.118 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.126 0.874 26 H 0.113 0.887 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.255 0.745 32 H 0.235 0.765 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.305 -13.899 8.223 18.638 hybrid contribution -0.260 0.772 -1.214 1.462 sum -9.565 -13.127 7.009 17.690 Atomic orbital electron populations 1.23285 0.81603 1.04602 1.01064 1.91190 1.20602 1.18111 1.96849 1.69377 1.14010 0.91145 1.36266 1.22453 0.97169 0.97924 0.91402 1.21912 0.98270 0.92184 1.03519 1.21263 0.93644 0.81436 1.00341 1.45619 1.58004 1.21087 1.09231 1.20066 0.79037 0.85428 0.84978 1.90683 1.57372 1.70354 1.25971 1.19630 0.89208 0.88218 0.85479 1.90554 1.63704 1.71393 1.24890 1.41668 1.46258 1.18220 1.08406 1.20009 1.35079 0.96646 0.95631 0.88307 1.26538 0.97051 1.03807 0.93546 1.69552 1.43823 1.40919 0.99109 0.84645 0.77765 0.75409 0.79139 1.18719 1.19123 1.19094 1.21814 0.99640 0.96122 0.97432 1.22943 0.94671 0.90581 1.03587 0.91674 0.93530 0.87394 0.88695 0.93841 0.89706 0.91553 0.90611 0.74478 0.76498 0.90121 0.88178 0.88800 0.92588 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.98 113.37 1.13 1.03 16 2 O -0.26 -5.59 11.64 -50.15 -0.58 -6.18 16 3 N -0.34 -7.02 5.71 -514.02 -2.94 -9.96 16 4 C 0.04 0.86 5.99 86.32 0.52 1.37 16 5 C -0.12 -2.91 5.68 30.65 0.17 -2.74 16 6 C 0.14 3.44 2.52 45.07 0.11 3.55 16 7 N -0.69 -21.79 5.08 -444.05 -2.25 -24.04 16 8 C 0.52 22.05 7.84 87.08 0.68 22.73 16 9 O -0.56 -25.87 16.13 -3.54 -0.06 -25.92 16 10 C 0.39 19.64 7.82 87.08 0.68 20.32 16 11 O -0.62 -32.86 16.03 -3.74 -0.06 -32.92 16 12 N -0.51 -27.82 5.25 -308.87 -1.62 -29.44 16 13 C -0.34 -19.21 9.67 84.35 0.82 -18.39 16 14 H 0.10 5.68 7.15 -2.91 -0.02 5.66 16 15 C -0.01 -0.27 5.51 85.14 0.47 0.20 16 16 N -0.90 -47.93 13.03 21.77 0.28 -47.65 16 17 Si 1.01 40.50 29.56 68.60 2.03 42.52 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 19 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 20 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 21 C -0.11 -1.94 5.57 30.65 0.17 -1.77 16 22 C 0.01 0.17 4.47 86.33 0.39 0.56 16 23 H 0.06 0.69 6.61 -2.38 -0.02 0.67 16 24 H 0.05 0.58 7.09 -2.39 -0.02 0.57 16 25 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 2.13 7.58 -2.39 -0.02 2.11 16 31 H 0.42 12.30 8.06 -92.71 -0.75 11.55 16 32 H 0.40 22.04 7.35 -92.71 -0.68 21.36 16 33 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 0.86 7.12 -2.39 -0.02 0.84 16 37 H 0.12 1.39 6.57 -2.39 -0.02 1.38 16 Total: -1.00 -66.81 311.61 -0.38 -67.19 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.32 Total: 39.54 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 5.14 Total: 26.86 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -6.53 Total: -111.09 kcal Atomic # 8 Polarization: -64.32 SS G_CDS: -0.70 Total: -65.02 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -66.81 -0.38 -67.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692125409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.393 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds