Wall clock time and date at job start Mon Mar 30 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 110.99778 * 2 1 4 4 C 1.50703 * 109.47298 * 180.02562 * 3 2 1 5 5 C 1.39867 * 126.03955 * 269.99925 * 4 3 2 6 6 N 1.30837 * 108.20302 * 179.73654 * 5 4 3 7 7 N 1.40077 * 108.20551 * 0.40633 * 6 5 4 8 8 C 1.46502 * 126.03873 * 179.85071 * 7 6 5 9 9 C 1.50692 * 109.47212 * 304.68943 * 8 7 6 10 10 C 1.38636 * 119.74883 * 90.00023 * 9 8 7 11 11 C 1.37620 * 120.25102 * 179.97438 * 10 9 8 12 12 C 1.40717 * 119.74444 * 0.27063 * 11 10 9 13 13 C 1.41397 * 120.24553 * 179.70220 * 12 11 10 14 14 H 1.07997 * 119.99566 * 24.28741 * 13 12 11 15 15 C 1.39947 * 119.99746 * 204.28899 * 13 12 11 16 16 N 1.30821 * 120.00278 * 17.73983 * 15 13 12 17 17 Si 1.86794 * 119.99656 * 197.73280 * 15 13 12 18 18 H 1.48496 * 109.47373 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47179 * 120.00490 * 17 15 13 20 20 H 1.48503 * 109.47456 * 240.00064 * 17 15 13 21 21 C 1.40722 * 119.50957 * 359.47998 * 12 11 10 22 22 C 1.37612 * 119.74268 * 0.49927 * 21 12 11 23 23 C 1.34951 * 107.92732 * 359.58950 * 7 6 5 24 24 H 1.08993 * 109.47578 * 59.99967 * 1 2 3 25 25 H 1.08999 * 109.46667 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46915 * 299.99547 * 1 2 3 27 27 H 1.00902 * 111.00404 * 123.95533 * 2 1 3 28 28 H 1.08992 * 109.47525 * 59.99999 * 3 2 1 29 29 H 1.09009 * 109.47083 * 299.99938 * 3 2 1 30 30 H 1.08008 * 125.89881 * 0.02562 * 5 4 3 31 31 H 1.09005 * 109.46938 * 184.69015 * 8 7 6 32 32 H 1.08998 * 109.46999 * 64.69261 * 8 7 6 33 33 H 1.08001 * 119.87890 * 359.95339 * 10 9 8 34 34 H 1.08002 * 120.12811 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00115 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.12623 * 180.25111 * 21 12 11 37 37 H 1.08003 * 119.87601 * 179.75109 * 22 21 12 38 38 H 1.07999 * 126.13218 * 180.21779 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3313 -0.0006 5 6 4.3249 1.3093 1.1300 6 7 5.5696 1.2705 0.7287 7 7 5.5783 1.2761 -0.6720 8 6 6.7677 1.2440 -1.5268 9 6 7.6819 2.3839 -1.1583 10 6 8.6558 2.1989 -0.1892 11 6 9.4966 3.2326 0.1550 12 6 9.3611 4.4826 -0.4769 13 6 10.2152 5.5538 -0.1270 14 1 11.1859 5.3526 0.3014 15 6 9.8024 6.8747 -0.3357 16 7 8.5351 7.1429 -0.5183 17 14 11.0612 8.2547 -0.3535 18 1 12.4162 7.6917 -0.1254 19 1 11.0257 8.9401 -1.6703 20 1 10.7424 9.2294 0.7205 21 6 8.3725 4.6573 -1.4629 22 6 7.5431 3.6095 -1.7914 23 6 4.2973 1.3103 -1.0952 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8306 -0.5261 0.7813 28 1 1.6459 1.8948 0.8899 29 1 1.6458 1.8948 -0.8901 30 1 3.9906 1.3176 2.1570 31 1 6.4679 1.3414 -2.5702 32 1 7.2910 0.2984 -1.3858 33 1 8.7549 1.2401 0.2979 34 1 10.2549 3.0862 0.9099 35 1 8.2490 8.0584 -0.6626 36 1 8.2624 5.6113 -1.9571 37 1 6.7810 3.7424 -2.5450 38 1 3.9662 1.3196 -2.1231 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693463711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:58 Heat of formation + Delta-G solvation = 91.787762 kcal Electronic energy + Delta-G solvation = -19443.919369 eV Core-core repulsion = 16480.341525 eV Total energy + Delta-G solvation = -2963.577844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.76070 -37.66060 -36.06655 -34.23476 -32.67257 -30.40004 -30.00198 -29.31762 -27.32553 -25.78285 -23.97934 -23.15678 -21.08804 -20.96781 -20.09124 -19.45572 -17.36191 -16.60469 -15.71417 -15.47588 -15.02835 -14.49720 -14.38211 -14.06798 -13.82029 -13.59454 -13.28451 -12.83737 -12.54861 -12.27681 -12.02420 -11.97493 -11.77318 -11.67172 -11.57093 -11.14033 -11.04121 -10.67847 -10.48110 -10.03798 -9.76888 -9.45870 -9.21758 -8.91160 -8.54879 -7.98093 -7.52639 -7.39699 -6.84107 -4.43375 2.35480 2.54619 2.96427 3.02856 3.05320 3.08974 3.11880 3.40238 3.87395 4.44085 4.54689 4.91539 5.15998 5.21034 5.25583 5.43411 5.51254 5.57090 5.62666 5.71870 5.77644 5.83322 5.92897 6.16541 6.29559 6.36403 6.43530 6.89295 6.91012 7.00082 7.07999 7.20975 7.30090 7.31229 7.51742 7.55307 7.77788 7.98960 8.02118 8.21964 8.23386 8.56918 8.82005 8.90230 10.09895 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.030840 B = 0.003570 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.703486 B = 7840.288033 C = 8256.592262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.693 5.693 3 C 0.142 3.858 4 C -0.255 4.255 5 C 0.033 3.967 6 N -0.275 5.275 7 N -0.348 5.348 8 C 0.192 3.808 9 C -0.244 4.244 10 C -0.051 4.051 11 C -0.231 4.231 12 C 0.119 3.881 13 C -0.457 4.457 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.787 5.787 17 Si 0.909 3.091 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.171 4.171 22 C -0.081 4.081 23 C 0.069 3.931 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.019 0.981 27 H 0.341 0.659 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.171 0.829 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.281 0.719 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 -8.068 -1.450 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.324 5.324 3 C 0.013 3.987 4 C -0.268 4.268 5 C -0.153 4.153 6 N -0.096 5.096 7 N -0.129 5.129 8 C 0.073 3.927 9 C -0.246 4.246 10 C -0.070 4.070 11 C -0.250 4.250 12 C 0.116 3.884 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.412 5.412 17 Si 0.733 3.267 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.190 4.190 22 C -0.100 4.100 23 C -0.080 4.080 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.159 0.841 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.188 0.812 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.102 0.898 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.111 -7.986 -1.913 12.266 hybrid contribution -0.693 1.119 0.715 1.499 sum -9.804 -6.867 -1.198 12.030 Atomic orbital electron populations 1.22186 0.88425 1.01500 1.00205 1.60506 1.06839 1.14855 1.50209 1.20063 0.89582 0.88729 1.00323 1.19734 0.95261 1.19575 0.92222 1.23635 0.90519 1.01977 0.99165 1.77415 1.20366 1.22254 0.89609 1.49307 1.05440 1.53527 1.04608 1.20461 0.82537 0.98711 0.90946 1.18857 1.03132 0.94939 1.07699 1.20321 0.94597 0.97037 0.95084 1.20960 1.04234 0.95184 1.04671 1.17673 0.90677 0.91579 0.88475 1.19696 1.02625 0.90119 1.36207 0.90221 1.25964 0.95572 1.00550 0.92281 1.69842 1.15624 1.21915 1.33780 0.86249 0.81626 0.80118 0.78702 1.18293 1.19618 1.19905 1.21255 0.99525 0.97989 1.00219 1.20479 0.97979 0.92974 0.98536 1.22267 0.84731 1.01354 0.99653 0.91877 0.91768 0.96283 0.84122 0.94858 0.90977 0.81239 0.89549 0.90649 0.89353 0.88915 0.90787 0.86443 0.89762 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.70 60.06 0.64 0.87 16 2 N -0.69 -7.47 6.84 -122.42 -0.84 -8.31 16 3 C 0.14 1.68 6.17 -4.98 -0.03 1.65 16 4 C -0.26 -3.74 5.61 -105.05 -0.59 -4.33 16 5 C 0.03 0.54 11.96 -17.37 -0.21 0.33 16 6 N -0.28 -5.35 12.41 30.63 0.38 -4.97 16 7 N -0.35 -6.22 3.67 -62.55 -0.23 -6.45 16 8 C 0.19 3.31 6.62 -5.20 -0.03 3.27 16 9 C -0.24 -5.25 5.34 -104.33 -0.56 -5.81 16 10 C -0.05 -1.17 9.67 -39.66 -0.38 -1.56 16 11 C -0.23 -5.75 9.80 -38.87 -0.38 -6.13 16 12 C 0.12 3.18 5.57 -106.82 -0.60 2.58 16 13 C -0.46 -12.12 9.05 -37.74 -0.34 -12.46 16 14 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 15 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 16 N -0.79 -20.36 10.95 55.55 0.61 -19.75 16 17 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 18 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 22 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 23 C 0.07 1.06 11.36 -17.22 -0.20 0.86 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.34 3.51 8.81 -39.29 -0.35 3.17 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.17 2.24 8.06 -52.48 -0.42 1.82 16 31 H 0.09 1.24 8.01 -51.93 -0.42 0.83 16 32 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 33 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 36 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 37 H 0.08 1.75 8.06 -52.48 -0.42 1.32 16 38 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -29.39 328.42 -8.93 -38.32 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.28 Total: 8.70 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -3.48 Total: -25.95 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.08 Total: -39.48 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.39 -8.93 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693463711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.103 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds