Wall clock time and date at job start Mon Mar 30 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 110.99778 * 2 1 4 4 C 1.50703 * 109.47298 * 180.02562 * 3 2 1 5 5 C 1.39867 * 126.03955 * 269.99925 * 4 3 2 6 6 N 1.30837 * 108.20302 * 179.73654 * 5 4 3 7 7 N 1.40077 * 108.20551 * 0.40633 * 6 5 4 8 8 C 1.46502 * 126.03873 * 179.85071 * 7 6 5 9 9 C 1.50692 * 109.47212 * 304.68943 * 8 7 6 10 10 C 1.38636 * 119.74883 * 90.00023 * 9 8 7 11 11 C 1.37620 * 120.25102 * 179.97438 * 10 9 8 12 12 C 1.40717 * 119.74444 * 0.27063 * 11 10 9 13 13 C 1.41397 * 120.24553 * 179.70220 * 12 11 10 14 14 H 1.07997 * 119.99566 * 24.28741 * 13 12 11 15 15 C 1.39947 * 119.99746 * 204.28899 * 13 12 11 16 16 N 1.30821 * 120.00278 * 17.73983 * 15 13 12 17 17 Si 1.86794 * 119.99656 * 197.73280 * 15 13 12 18 18 H 1.48496 * 109.47373 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47179 * 120.00490 * 17 15 13 20 20 H 1.48503 * 109.47456 * 240.00064 * 17 15 13 21 21 C 1.40722 * 119.50957 * 359.47998 * 12 11 10 22 22 C 1.37612 * 119.74268 * 0.49927 * 21 12 11 23 23 C 1.34951 * 107.92732 * 359.58950 * 7 6 5 24 24 H 1.08993 * 109.47578 * 59.99967 * 1 2 3 25 25 H 1.08999 * 109.46667 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46915 * 299.99547 * 1 2 3 27 27 H 1.00902 * 111.00404 * 123.95533 * 2 1 3 28 28 H 1.08992 * 109.47525 * 59.99999 * 3 2 1 29 29 H 1.09009 * 109.47083 * 299.99938 * 3 2 1 30 30 H 1.08008 * 125.89881 * 0.02562 * 5 4 3 31 31 H 1.09005 * 109.46938 * 184.69015 * 8 7 6 32 32 H 1.08998 * 109.46999 * 64.69261 * 8 7 6 33 33 H 1.08001 * 119.87890 * 359.95339 * 10 9 8 34 34 H 1.08002 * 120.12811 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00115 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.12623 * 180.25111 * 21 12 11 37 37 H 1.08003 * 119.87601 * 179.75109 * 22 21 12 38 38 H 1.07999 * 126.13218 * 180.21779 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3313 -0.0006 5 6 4.3249 1.3093 1.1300 6 7 5.5696 1.2705 0.7287 7 7 5.5783 1.2761 -0.6720 8 6 6.7677 1.2440 -1.5268 9 6 7.6819 2.3839 -1.1583 10 6 8.6558 2.1989 -0.1892 11 6 9.4966 3.2326 0.1550 12 6 9.3611 4.4826 -0.4769 13 6 10.2152 5.5538 -0.1270 14 1 11.1859 5.3526 0.3014 15 6 9.8024 6.8747 -0.3357 16 7 8.5351 7.1429 -0.5183 17 14 11.0612 8.2547 -0.3535 18 1 12.4162 7.6917 -0.1254 19 1 11.0257 8.9401 -1.6703 20 1 10.7424 9.2294 0.7205 21 6 8.3725 4.6573 -1.4629 22 6 7.5431 3.6095 -1.7914 23 6 4.2973 1.3103 -1.0952 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8306 -0.5261 0.7813 28 1 1.6459 1.8948 0.8899 29 1 1.6458 1.8948 -0.8901 30 1 3.9906 1.3176 2.1570 31 1 6.4679 1.3414 -2.5702 32 1 7.2910 0.2984 -1.3858 33 1 8.7549 1.2401 0.2979 34 1 10.2549 3.0862 0.9099 35 1 8.2490 8.0584 -0.6626 36 1 8.2624 5.6113 -1.9571 37 1 6.7810 3.7424 -2.5450 38 1 3.9662 1.3196 -2.1231 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693463711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:57 Heat of formation + Delta-G solvation = 74.226004 kcal Electronic energy + Delta-G solvation = -19444.680904 eV Core-core repulsion = 16480.341525 eV Total energy + Delta-G solvation = -2964.339379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.00042 -39.47976 -36.96433 -35.95977 -34.20226 -31.67844 -31.52462 -31.16292 -28.80709 -26.94708 -25.53154 -24.05791 -22.94774 -22.51933 -21.44375 -20.82802 -19.27525 -17.79770 -17.26470 -16.59037 -16.49497 -15.93697 -15.64934 -15.46829 -15.12976 -14.91327 -14.68602 -14.24124 -13.86448 -13.85899 -13.55843 -13.30665 -13.07656 -12.81006 -12.77902 -12.74674 -12.52485 -12.32826 -12.17108 -11.58420 -11.33787 -11.25084 -11.06433 -10.23718 -9.44863 -9.40483 -9.30679 -9.09151 -8.69687 -6.40179 0.77792 1.11488 1.18609 1.35532 1.42426 1.51387 1.93106 1.97132 2.17797 2.71299 3.61555 3.65716 3.80518 4.08591 4.21164 4.23776 4.39037 4.44635 4.48480 4.51715 4.62040 4.67899 4.74896 4.87963 4.98310 5.00747 5.10860 5.11554 5.31295 5.32391 5.41424 5.65511 5.84201 5.90194 6.05241 6.14867 6.15544 6.31279 6.34593 6.52858 6.64792 6.88706 6.95252 6.98507 8.27414 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.030840 B = 0.003570 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.703486 B = 7840.288033 C = 8256.592262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.702 5.702 3 C 0.148 3.852 4 C -0.253 4.253 5 C 0.031 3.969 6 N -0.330 5.330 7 N -0.363 5.363 8 C 0.194 3.806 9 C -0.228 4.228 10 C -0.057 4.057 11 C -0.251 4.251 12 C 0.086 3.914 13 C -0.498 4.498 14 H 0.075 0.925 15 C 0.034 3.966 16 N -0.823 5.823 17 Si 0.985 3.015 18 H -0.258 1.258 19 H -0.261 1.261 20 H -0.266 1.266 21 C -0.195 4.195 22 C -0.084 4.084 23 C 0.066 3.934 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.343 0.657 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.191 0.809 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.289 0.711 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.015 -8.791 -2.224 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.333 5.333 3 C 0.019 3.981 4 C -0.265 4.265 5 C -0.155 4.155 6 N -0.151 5.151 7 N -0.144 5.144 8 C 0.075 3.925 9 C -0.230 4.230 10 C -0.075 4.075 11 C -0.271 4.271 12 C 0.084 3.916 13 C -0.528 4.528 14 H 0.093 0.907 15 C -0.181 4.181 16 N -0.448 5.448 17 Si 0.805 3.195 18 H -0.181 1.181 19 H -0.186 1.186 20 H -0.190 1.190 21 C -0.214 4.214 22 C -0.102 4.102 23 C -0.082 4.082 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.043 0.957 27 H 0.160 0.840 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.208 0.792 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.787 -8.731 -2.683 14.135 hybrid contribution -0.359 1.157 0.972 1.553 sum -11.146 -7.574 -1.711 13.585 Atomic orbital electron populations 1.22231 0.86964 1.02405 1.00626 1.60488 1.08233 1.14125 1.50451 1.20032 0.87656 0.89539 1.00920 1.20074 0.96683 1.18310 0.91468 1.24122 0.90077 1.00573 1.00745 1.77354 1.22257 1.24687 0.90824 1.49133 1.06190 1.54882 1.04204 1.20520 0.82144 0.97228 0.92613 1.19298 1.02494 0.95721 1.05440 1.20585 0.94384 0.97166 0.95393 1.21147 1.05155 0.95606 1.05147 1.18007 0.91678 0.92518 0.89441 1.19913 1.02896 0.91470 1.38471 0.90687 1.26815 0.97499 1.02536 0.91231 1.69888 1.17340 1.22954 1.34632 0.85125 0.78630 0.76601 0.79152 1.18144 1.18552 1.19036 1.21247 1.00833 0.98422 1.00908 1.20776 0.97730 0.92783 0.98951 1.22860 0.83734 1.00251 1.01348 0.91583 0.90684 0.95676 0.83975 0.94348 0.90320 0.79215 0.86077 0.89274 0.87602 0.88918 0.90028 0.88081 0.87217 0.78650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 127.69 1.37 1.75 16 2 N -0.70 -13.20 6.84 -541.24 -3.70 -16.91 16 3 C 0.15 3.07 6.17 85.56 0.53 3.60 16 4 C -0.25 -6.79 5.61 -20.14 -0.11 -6.91 16 5 C 0.03 0.95 11.96 85.24 1.02 1.97 16 6 N -0.33 -12.42 12.41 -57.02 -0.71 -13.13 16 7 N -0.36 -12.13 3.67 -351.80 -1.29 -13.42 16 8 C 0.19 6.15 6.62 85.63 0.57 6.71 16 9 C -0.23 -9.53 5.34 -19.68 -0.11 -9.63 16 10 C -0.06 -2.57 9.67 22.22 0.21 -2.36 16 11 C -0.25 -12.91 9.80 22.73 0.22 -12.69 16 12 C 0.09 4.79 5.57 -21.29 -0.12 4.67 16 13 C -0.50 -27.60 9.05 23.46 0.21 -27.39 16 14 H 0.07 4.03 7.91 -2.91 -0.02 4.00 16 15 C 0.03 1.76 5.14 85.26 0.44 2.20 16 16 N -0.82 -43.82 10.95 21.83 0.24 -43.58 16 17 Si 0.98 38.62 29.59 68.60 2.03 40.65 16 18 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 21 C -0.19 -10.37 8.70 22.73 0.20 -10.18 16 22 C -0.08 -3.81 9.67 22.22 0.21 -3.60 16 23 C 0.07 1.82 11.36 83.54 0.95 2.77 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.34 6.24 8.81 -89.69 -0.79 5.45 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.19 4.72 8.06 -2.91 -0.02 4.70 16 31 H 0.12 2.99 8.01 -2.38 -0.02 2.97 16 32 H 0.09 2.58 8.08 -2.39 -0.02 2.57 16 33 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 34 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 36 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 37 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.20 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -65.50 328.42 2.43 -63.07 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.27 Total: 32.38 kcal Atomic # 6 Polarization: -54.67 SS G_CDS: 5.59 Total: -49.07 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -5.46 Total: -87.03 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -65.50 2.43 -63.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693463711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.301 kcal (2) G-P(sol) polarization free energy of solvation -65.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds