Wall clock time and date at job start Mon Mar 30 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47222 * 275.41275 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.41328 * 3 2 1 6 6 H 1.48504 * 109.47122 * 155.41333 * 3 2 1 7 7 C 1.39945 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00388 * 341.71916 * 7 2 1 9 9 C 1.41392 * 120.00071 * 161.71500 * 7 2 1 10 10 C 1.40716 * 120.24802 * 330.23912 * 9 7 2 11 11 C 1.37610 * 119.74899 * 179.69783 * 10 9 7 12 12 C 1.38632 * 120.24865 * 0.27687 * 11 10 9 13 13 C 1.50706 * 119.74902 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.47193 * 89.99972 * 13 12 11 15 15 C 1.34947 * 126.03800 * 125.00384 * 14 13 12 16 16 C 1.35307 * 107.74986 * 179.97438 * 15 14 13 17 17 C 1.50699 * 126.04423 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47519 * 89.99461 * 17 16 15 19 19 N 1.46902 * 109.47596 * 180.02562 * 18 17 16 20 20 C 1.39876 * 107.92187 * 359.97438 * 16 15 14 21 21 N 1.30839 * 108.19482 * 359.74600 * 20 16 15 22 22 C 1.38636 * 120.50095 * 359.97438 * 12 11 10 23 23 C 1.37614 * 120.24893 * 359.97438 * 22 12 11 24 24 H 0.97002 * 119.99654 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.11915 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.87748 * 180.30093 * 11 10 9 27 27 H 1.09001 * 109.46772 * 210.00435 * 13 12 11 28 28 H 1.09000 * 109.46651 * 329.99885 * 13 12 11 29 29 H 1.08004 * 126.12258 * 359.94802 * 15 14 13 30 30 H 1.09004 * 109.47104 * 209.99571 * 17 16 15 31 31 H 1.09003 * 109.46927 * 329.99503 * 17 16 15 32 32 H 1.09002 * 109.47090 * 300.00701 * 18 17 16 33 33 H 1.09003 * 109.46987 * 60.00078 * 18 17 16 34 34 H 1.00897 * 110.99733 * 179.97438 * 19 18 17 35 35 H 1.00897 * 110.99894 * 303.95581 * 19 18 17 36 36 H 1.07998 * 125.90512 * 179.97438 * 20 16 15 37 37 H 1.08002 * 119.87220 * 179.97438 * 22 12 11 38 38 H 1.07997 * 120.12752 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4097 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5087 -2.1239 0.2924 9 6 3.3682 -1.2428 -0.3847 10 6 3.8633 -0.3107 -1.3154 11 6 5.1905 -0.3461 -1.6773 12 6 6.0376 -1.2990 -1.1330 13 6 7.4890 -1.3279 -1.5378 14 7 8.2650 -0.4747 -0.6345 15 6 9.3448 -0.8518 0.0817 16 6 9.7691 0.2232 0.7853 17 6 10.9489 0.2605 1.7221 18 6 12.2065 0.6514 0.9433 19 7 13.3567 0.6871 1.8564 20 6 8.9198 1.2944 0.4886 21 7 8.0214 0.8786 -0.3668 22 6 5.5597 -2.2256 -0.2193 23 6 4.2364 -2.2083 0.1580 24 1 -0.4850 0.8401 -0.0004 25 1 3.2050 0.4326 -1.7406 26 1 5.5737 0.3715 -2.3877 27 1 7.8616 -2.3507 -1.4813 28 1 7.5886 -0.9609 -2.5593 29 1 9.7902 -1.8357 0.0917 30 1 10.7658 0.9932 2.5081 31 1 11.0894 -0.7239 2.1687 32 1 12.3895 -0.0813 0.1573 33 1 12.0659 1.6358 0.4968 34 1 14.2003 0.9427 1.3654 35 1 13.1849 1.3115 2.6301 36 1 8.9952 2.2931 0.8926 37 1 6.2285 -2.9638 0.1981 38 1 3.8663 -2.9307 0.8703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693517683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:55 Heat of formation + Delta-G solvation = 83.604854 kcal Electronic energy + Delta-G solvation = -19555.844771 eV Core-core repulsion = 16591.912089 eV Total energy + Delta-G solvation = -2963.932682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91234 -37.96445 -35.75892 -34.21531 -32.93935 -31.10835 -30.46761 -29.77384 -27.83745 -26.16503 -23.82352 -22.35182 -21.68046 -20.92805 -20.08259 -19.66118 -17.49185 -16.76397 -15.80096 -15.73530 -15.18812 -15.03999 -14.37566 -14.16050 -13.91770 -13.84601 -13.43693 -12.93009 -12.67326 -12.56598 -12.38725 -12.12696 -11.85122 -11.69624 -11.44543 -11.20174 -10.83513 -10.76832 -10.29698 -10.16982 -9.94796 -9.62269 -9.19212 -9.06907 -8.92902 -8.08339 -7.76731 -7.64158 -7.03235 -4.57061 2.18136 2.36048 2.66489 3.01309 3.04175 3.15068 3.23693 3.35265 3.96198 4.38813 4.42872 4.86569 4.96706 5.09888 5.21026 5.34658 5.37948 5.44560 5.57333 5.69902 5.73093 5.81834 5.96314 6.04392 6.09313 6.15870 6.37550 6.50830 6.76928 6.82290 6.88367 6.94294 7.10112 7.17783 7.35981 7.37727 7.48773 7.69200 7.81559 8.05157 8.08547 8.27735 8.58180 8.72501 9.98258 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.029765 B = 0.003997 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.473990 B = 7002.698616 C = 7415.932832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.085 3.915 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.242 1.242 7 C -0.442 4.442 8 H 0.092 0.908 9 C 0.101 3.899 10 C -0.243 4.243 11 C -0.037 4.037 12 C -0.246 4.246 13 C 0.192 3.808 14 N -0.350 5.350 15 C 0.052 3.948 16 C -0.251 4.251 17 C -0.032 4.032 18 C 0.066 3.934 19 N -0.855 5.855 20 C 0.033 3.967 21 N -0.277 5.277 22 C -0.060 4.060 23 C -0.214 4.214 24 H 0.287 0.713 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.166 0.834 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.339 0.661 35 H 0.339 0.661 36 H 0.172 0.828 37 H 0.091 0.909 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.681 1.514 0.472 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.165 1.165 7 C -0.470 4.470 8 H 0.110 0.890 9 C 0.097 3.903 10 C -0.262 4.262 11 C -0.056 4.056 12 C -0.249 4.249 13 C 0.073 3.927 14 N -0.132 5.132 15 C -0.096 4.096 16 C -0.263 4.263 17 C -0.071 4.071 18 C -0.065 4.065 19 N -0.384 5.384 20 C -0.153 4.153 21 N -0.098 5.098 22 C -0.079 4.079 23 C -0.233 4.233 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.183 0.817 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.189 0.811 37 H 0.109 0.891 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 17.124 1.031 -0.234 17.157 hybrid contribution 0.856 1.537 0.260 1.778 sum 17.980 2.567 0.026 18.163 Atomic orbital electron populations 1.69694 1.08165 1.30487 1.34279 1.26197 0.94726 1.01937 0.90666 0.86293 0.81429 0.79461 0.78988 1.19549 1.21766 1.16525 1.19572 0.93265 0.96144 1.38064 0.89038 1.17770 0.92905 0.90614 0.88968 1.21004 0.95622 1.05051 1.04547 1.20393 0.93192 0.95056 0.96953 1.18866 0.92631 1.04196 1.09161 1.20438 0.89631 0.91576 0.91011 1.49259 1.21599 1.07977 1.34334 1.22301 0.91148 0.99900 0.96244 1.19850 1.03764 0.93967 1.08757 1.19722 0.89825 1.02160 0.95412 1.21839 0.90137 0.99567 0.94948 1.58748 1.05508 1.60440 1.13747 1.23675 0.93964 0.99647 0.97981 1.77428 1.22173 0.91391 1.18840 1.20443 0.95311 0.96604 0.95574 1.20959 0.93029 1.04320 1.04994 0.90282 0.88171 0.88820 0.89309 0.90453 0.81677 0.91832 0.91081 0.91278 0.95609 0.84938 0.84911 0.81082 0.89094 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.39 13.93 55.55 0.77 -20.62 16 2 C 0.08 2.23 5.40 -17.34 -0.09 2.14 16 3 Si 0.91 21.42 24.52 -169.99 -4.17 17.25 16 4 H -0.27 -6.15 6.71 56.52 0.38 -5.77 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.24 -6.01 6.86 56.52 0.39 -5.62 16 7 C -0.44 -12.00 9.57 -37.74 -0.36 -12.36 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 9 C 0.10 2.57 5.11 -106.82 -0.55 2.02 16 10 C -0.24 -5.94 7.18 -38.88 -0.28 -6.22 16 11 C -0.04 -0.81 9.67 -39.66 -0.38 -1.20 16 12 C -0.25 -4.92 5.34 -104.33 -0.56 -5.48 16 13 C 0.19 3.02 6.62 -5.19 -0.03 2.98 16 14 N -0.35 -5.77 3.67 -62.55 -0.23 -6.00 16 15 C 0.05 0.71 11.36 -17.23 -0.20 0.51 16 16 C -0.25 -3.35 5.35 -105.05 -0.56 -3.91 16 17 C -0.03 -0.34 5.96 -27.89 -0.17 -0.50 16 18 C 0.07 0.61 6.77 -3.83 -0.03 0.59 16 19 N -0.86 -6.82 9.62 -10.37 -0.10 -6.92 16 20 C 0.03 0.51 11.96 -17.36 -0.21 0.30 16 21 N -0.28 -5.11 12.41 30.63 0.38 -4.72 16 22 C -0.06 -1.25 9.67 -39.66 -0.38 -1.63 16 23 C -0.21 -4.97 9.80 -38.87 -0.38 -5.35 16 24 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 25 H 0.10 2.46 4.73 -52.48 -0.25 2.21 16 26 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 27 H 0.09 1.12 8.01 -51.93 -0.42 0.71 16 28 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 29 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.34 2.16 9.08 -39.29 -0.36 1.80 16 35 H 0.34 2.30 8.99 -39.29 -0.35 1.94 16 36 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -29.76 322.68 -7.85 -37.61 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.19 Total: 6.64 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -4.18 Total: -28.09 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.82 Total: -38.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.17 Total: 17.25 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.76 -7.85 -37.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693517683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.217 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds