Wall clock time and date at job start Mon Mar 30 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47222 * 275.41275 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.41328 * 3 2 1 6 6 H 1.48504 * 109.47122 * 155.41333 * 3 2 1 7 7 C 1.39945 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00388 * 341.71916 * 7 2 1 9 9 C 1.41392 * 120.00071 * 161.71500 * 7 2 1 10 10 C 1.40716 * 120.24802 * 330.23912 * 9 7 2 11 11 C 1.37610 * 119.74899 * 179.69783 * 10 9 7 12 12 C 1.38632 * 120.24865 * 0.27687 * 11 10 9 13 13 C 1.50706 * 119.74902 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.47193 * 89.99972 * 13 12 11 15 15 C 1.34947 * 126.03800 * 125.00384 * 14 13 12 16 16 C 1.35307 * 107.74986 * 179.97438 * 15 14 13 17 17 C 1.50699 * 126.04423 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47519 * 89.99461 * 17 16 15 19 19 N 1.46902 * 109.47596 * 180.02562 * 18 17 16 20 20 C 1.39876 * 107.92187 * 359.97438 * 16 15 14 21 21 N 1.30839 * 108.19482 * 359.74600 * 20 16 15 22 22 C 1.38636 * 120.50095 * 359.97438 * 12 11 10 23 23 C 1.37614 * 120.24893 * 359.97438 * 22 12 11 24 24 H 0.97002 * 119.99654 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.11915 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.87748 * 180.30093 * 11 10 9 27 27 H 1.09001 * 109.46772 * 210.00435 * 13 12 11 28 28 H 1.09000 * 109.46651 * 329.99885 * 13 12 11 29 29 H 1.08004 * 126.12258 * 359.94802 * 15 14 13 30 30 H 1.09004 * 109.47104 * 209.99571 * 17 16 15 31 31 H 1.09003 * 109.46927 * 329.99503 * 17 16 15 32 32 H 1.09002 * 109.47090 * 300.00701 * 18 17 16 33 33 H 1.09003 * 109.46987 * 60.00078 * 18 17 16 34 34 H 1.00897 * 110.99733 * 179.97438 * 19 18 17 35 35 H 1.00897 * 110.99894 * 303.95581 * 19 18 17 36 36 H 1.07998 * 125.90512 * 179.97438 * 20 16 15 37 37 H 1.08002 * 119.87220 * 179.97438 * 22 12 11 38 38 H 1.07997 * 120.12752 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4097 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5087 -2.1239 0.2924 9 6 3.3682 -1.2428 -0.3847 10 6 3.8633 -0.3107 -1.3154 11 6 5.1905 -0.3461 -1.6773 12 6 6.0376 -1.2990 -1.1330 13 6 7.4890 -1.3279 -1.5378 14 7 8.2650 -0.4747 -0.6345 15 6 9.3448 -0.8518 0.0817 16 6 9.7691 0.2232 0.7853 17 6 10.9489 0.2605 1.7221 18 6 12.2065 0.6514 0.9433 19 7 13.3567 0.6871 1.8564 20 6 8.9198 1.2944 0.4886 21 7 8.0214 0.8786 -0.3668 22 6 5.5597 -2.2256 -0.2193 23 6 4.2364 -2.2083 0.1580 24 1 -0.4850 0.8401 -0.0004 25 1 3.2050 0.4326 -1.7406 26 1 5.5737 0.3715 -2.3877 27 1 7.8616 -2.3507 -1.4813 28 1 7.5886 -0.9609 -2.5593 29 1 9.7902 -1.8357 0.0917 30 1 10.7658 0.9932 2.5081 31 1 11.0894 -0.7239 2.1687 32 1 12.3895 -0.0813 0.1573 33 1 12.0659 1.6358 0.4968 34 1 14.2003 0.9427 1.3654 35 1 13.1849 1.3115 2.6301 36 1 8.9952 2.2931 0.8926 37 1 6.2285 -2.9638 0.1981 38 1 3.8663 -2.9307 0.8703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693517683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:55 Heat of formation + Delta-G solvation = 64.092038 kcal Electronic energy + Delta-G solvation = -19556.690910 eV Core-core repulsion = 16591.912089 eV Total energy + Delta-G solvation = -2964.778821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.03793 -39.72038 -36.59368 -35.87747 -34.44709 -32.19282 -31.91594 -31.55536 -29.14680 -27.38286 -25.39577 -23.46562 -23.13486 -22.42309 -21.45761 -20.80841 -19.41545 -17.86649 -17.49014 -16.67220 -16.47924 -15.94425 -15.79611 -15.69756 -15.42041 -15.12900 -14.70995 -14.49813 -14.15185 -13.90999 -13.71390 -13.54045 -13.21663 -12.93976 -12.75215 -12.64990 -12.51063 -12.11241 -12.01026 -11.78034 -11.50331 -11.25030 -11.04863 -10.26977 -9.56502 -9.55711 -9.49559 -9.13732 -8.98389 -6.57072 0.58525 0.84221 1.14331 1.19979 1.31777 1.41767 1.87741 1.96441 2.05839 2.57816 3.45327 3.66534 3.87577 4.05838 4.10195 4.21667 4.28790 4.33569 4.39897 4.48969 4.54650 4.65094 4.68754 4.81252 4.95837 4.97810 5.01190 5.07357 5.26046 5.31446 5.44116 5.54733 5.67634 5.85081 5.85956 5.96050 6.19044 6.28565 6.31227 6.35784 6.66464 6.67282 6.77731 6.93869 8.09999 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.029765 B = 0.003997 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.473990 B = 7002.698616 C = 7415.932832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.053 3.947 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.484 4.484 8 H 0.061 0.939 9 C 0.079 3.921 10 C -0.257 4.257 11 C -0.049 4.049 12 C -0.219 4.219 13 C 0.192 3.808 14 N -0.365 5.365 15 C 0.055 3.945 16 C -0.250 4.250 17 C -0.026 4.026 18 C 0.073 3.927 19 N -0.860 5.860 20 C 0.028 3.972 21 N -0.334 5.334 22 C -0.059 4.059 23 C -0.227 4.227 24 H 0.295 0.705 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.131 0.869 28 H 0.090 0.910 29 H 0.203 0.797 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.348 0.652 35 H 0.346 0.654 36 H 0.189 0.811 37 H 0.131 0.869 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.772 1.328 0.426 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.162 4.162 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.513 4.513 8 H 0.079 0.921 9 C 0.076 3.924 10 C -0.276 4.276 11 C -0.068 4.068 12 C -0.221 4.221 13 C 0.073 3.927 14 N -0.146 5.146 15 C -0.091 4.091 16 C -0.262 4.262 17 C -0.065 4.065 18 C -0.058 4.058 19 N -0.390 5.390 20 C -0.157 4.157 21 N -0.156 5.156 22 C -0.077 4.077 23 C -0.246 4.246 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.128 0.872 27 H 0.149 0.851 28 H 0.108 0.892 29 H 0.219 0.781 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.205 0.795 37 H 0.149 0.851 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 21.226 0.853 -0.276 21.245 hybrid contribution -0.046 1.499 0.260 1.522 sum 21.180 2.351 -0.017 21.310 Atomic orbital electron populations 1.69710 1.08932 1.31493 1.36839 1.26711 0.95261 1.03852 0.90411 0.85508 0.79181 0.77140 0.79305 1.18637 1.20059 1.18895 1.19535 0.94664 0.95669 1.41454 0.92111 1.17922 0.92701 0.92016 0.89752 1.21098 0.96870 1.04933 1.04721 1.20695 0.92496 0.96077 0.97484 1.19441 0.95056 1.01480 1.06134 1.20567 0.86603 0.93993 0.91551 1.49079 1.22711 1.07527 1.35327 1.22933 0.89998 1.01441 0.94772 1.20170 1.04053 0.93287 1.08714 1.19711 0.89202 1.02579 0.95004 1.21697 0.90079 0.99215 0.94833 1.58722 1.05519 1.60899 1.13889 1.24130 0.93538 1.00971 0.97062 1.77372 1.24331 0.92877 1.20989 1.20854 0.94553 0.97267 0.95030 1.21200 0.94282 1.03933 1.05223 0.89456 0.89026 0.87171 0.85135 0.89224 0.78051 0.91335 0.90725 0.91579 0.95998 0.83858 0.84117 0.79451 0.85083 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.13 13.93 21.83 0.30 -46.83 16 2 C 0.05 2.93 5.40 85.26 0.46 3.39 16 3 Si 0.96 45.54 24.52 68.60 1.68 47.23 16 4 H -0.26 -11.76 6.71 99.48 0.67 -11.10 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.26 -13.29 6.86 99.48 0.68 -12.60 16 7 C -0.48 -27.79 9.57 23.46 0.22 -27.56 16 8 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 9 C 0.08 4.12 5.11 -21.29 -0.11 4.01 16 10 C -0.26 -12.65 7.18 22.73 0.16 -12.49 16 11 C -0.05 -2.07 9.67 22.22 0.21 -1.85 16 12 C -0.22 -8.06 5.34 -19.67 -0.11 -8.17 16 13 C 0.19 5.13 6.62 85.64 0.57 5.70 16 14 N -0.36 -10.59 3.67 -351.80 -1.29 -11.88 16 15 C 0.06 1.26 11.36 83.54 0.95 2.21 16 16 C -0.25 -5.79 5.35 -20.14 -0.11 -5.90 16 17 C -0.03 -0.45 5.96 29.85 0.18 -0.27 16 18 C 0.07 1.12 6.77 86.30 0.58 1.70 16 19 N -0.86 -11.12 9.62 -186.72 -1.80 -12.92 16 20 C 0.03 0.80 11.96 85.24 1.02 1.82 16 21 N -0.33 -11.52 12.41 -57.02 -0.71 -12.22 16 22 C -0.06 -2.24 9.67 22.22 0.21 -2.02 16 23 C -0.23 -10.49 9.80 22.73 0.22 -10.27 16 24 H 0.29 14.79 8.30 -92.71 -0.77 14.02 16 25 H 0.09 4.59 4.73 -2.91 -0.01 4.57 16 26 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 27 H 0.13 2.45 8.01 -2.39 -0.02 2.43 16 28 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 29 H 0.20 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.35 3.46 9.08 -89.70 -0.81 2.64 16 35 H 0.35 3.69 8.99 -89.70 -0.81 2.88 16 36 H 0.19 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -67.25 322.68 2.06 -65.18 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.60 Total: 21.14 kcal Atomic # 6 Polarization: -54.18 SS G_CDS: 4.48 Total: -49.70 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -3.49 Total: -83.85 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.68 Total: 47.23 kcal Total: -67.25 2.06 -65.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693517683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.274 kcal (2) G-P(sol) polarization free energy of solvation -67.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds