Wall clock time and date at job start Mon Mar 30 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30579 * 1 3 3 Si 1.86798 * 120.00359 * 2 1 4 4 H 1.48501 * 109.47035 * 240.00031 * 3 2 1 5 5 H 1.48494 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47101 * 119.99903 * 3 2 1 7 7 C 1.40352 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.40196 * 119.99762 * 0.02562 * 7 2 1 10 10 N 1.32461 * 125.30169 * 359.96116 * 9 7 2 11 11 C 1.33973 * 109.78059 * 180.02562 * 10 9 7 12 12 C 1.40532 * 133.19634 * 179.97438 * 11 10 9 13 13 C 1.36355 * 119.85015 * 179.97438 * 12 11 10 14 14 C 1.39041 * 120.75939 * 359.97438 * 13 12 11 15 15 C 1.37961 * 120.57213 * 0.02562 * 14 13 12 16 16 C 1.38717 * 119.76670 * 359.97438 * 15 14 13 17 17 N 1.37844 * 125.30601 * 179.97438 * 9 7 2 18 18 C 1.46500 * 126.53563 * 359.93965 * 17 9 7 19 19 C 1.53001 * 109.47646 * 270.02574 * 18 17 9 20 20 C 1.53777 * 113.61490 * 274.13872 * 19 18 17 21 21 C 1.53948 * 87.02094 * 220.04444 * 20 19 18 22 22 N 1.46903 * 113.67096 * 139.93244 * 21 20 19 23 23 C 1.53776 * 113.61593 * 176.52962 * 19 18 17 24 24 H 0.97007 * 119.99600 * 0.02562 * 1 2 3 25 25 H 1.08006 * 120.07641 * 359.97438 * 12 11 10 26 26 H 1.08001 * 119.62195 * 179.72324 * 13 12 11 27 27 H 1.07996 * 119.71685 * 179.97438 * 14 13 12 28 28 H 1.08004 * 120.11978 * 180.02562 * 15 14 13 29 29 H 1.08997 * 109.47347 * 30.03005 * 18 17 9 30 30 H 1.09004 * 109.47336 * 150.02340 * 18 17 9 31 31 H 1.08998 * 112.84474 * 45.33010 * 19 18 17 32 32 H 1.08998 * 113.61613 * 334.56395 * 20 19 18 33 33 H 1.09004 * 113.61524 * 105.46440 * 20 19 18 34 34 H 1.09003 * 113.61930 * 270.80086 * 21 20 19 35 35 H 1.00900 * 111.00052 * 82.43837 * 22 21 20 36 36 H 1.00899 * 111.00389 * 206.40135 * 22 21 20 37 37 H 1.08999 * 113.61614 * 254.53095 * 23 19 18 38 38 H 1.09002 * 113.61583 * 25.34787 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0936 1.6963 -1.2125 5 1 1.2750 2.7464 0.0006 6 1 3.0936 1.6963 1.2125 7 6 2.0075 -1.2155 0.0005 8 1 3.0875 -1.2156 0.0010 9 6 1.3065 -2.4296 0.0005 10 7 -0.0125 -2.5519 0.0008 11 6 -0.3475 -3.8491 0.0013 12 6 -1.5800 -4.5242 0.0022 13 6 -1.6070 -5.8875 0.0019 14 6 -0.4266 -6.6222 0.0003 15 6 0.7968 -5.9844 -0.0006 16 6 0.8509 -4.5983 -0.0004 17 7 1.8823 -3.6820 0.0005 18 6 3.3161 -3.9827 -0.0007 19 6 3.8141 -4.0874 -1.4436 20 6 3.6323 -5.4853 -2.0581 21 6 5.0167 -5.2935 -2.7037 22 7 5.8471 -6.5052 -2.6894 23 6 5.3302 -4.3183 -1.5568 24 1 -0.4850 0.8401 -0.0004 25 1 -2.5038 -3.9646 0.0030 26 1 -2.5563 -6.4026 0.0071 27 1 -0.4676 -7.7014 0.0006 28 1 1.7092 -6.5623 -0.0022 29 1 3.8548 -3.1863 0.5127 30 1 3.4895 -4.9283 0.5130 31 1 3.4467 -3.2806 -2.0777 32 1 3.6022 -6.2864 -1.3196 33 1 2.8172 -5.5425 -2.7795 34 1 4.9794 -4.8176 -3.6837 35 1 5.6090 -7.1158 -3.4567 36 1 6.8285 -6.2713 -2.7044 37 1 5.8840 -3.4347 -1.8740 38 1 5.7655 -4.7984 -0.6803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699224880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:38 Heat of formation + Delta-G solvation = 80.259376 kcal Electronic energy + Delta-G solvation = -20606.534153 eV Core-core repulsion = 17642.456400 eV Total energy + Delta-G solvation = -2964.077753 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43378 -38.84192 -36.03594 -33.68309 -33.09755 -31.48230 -29.38739 -28.59260 -26.39318 -25.78141 -25.51999 -21.89195 -21.28930 -20.59701 -19.45775 -19.06428 -16.95821 -16.18142 -16.05625 -15.75025 -15.24959 -14.93720 -14.80483 -14.00857 -13.74308 -13.22785 -12.94764 -12.65902 -12.63651 -12.22896 -12.05497 -11.53546 -11.37808 -11.28529 -11.01932 -10.86465 -10.62386 -10.56567 -10.37762 -10.33930 -10.11507 -9.97363 -9.30573 -8.94523 -8.79540 -7.86311 -7.19208 -6.80903 -6.65515 -4.60029 2.29814 2.75570 3.00845 3.02088 3.03812 3.79103 4.05799 4.16912 4.48254 4.65317 4.89421 4.97225 4.99152 5.08788 5.50138 5.59232 5.67658 5.71198 5.86767 5.88416 5.89944 5.97058 6.08946 6.12014 6.23708 6.39478 6.44025 6.59472 6.62754 6.77787 6.91804 7.01910 7.13296 7.30367 7.31911 7.51281 7.65645 7.77885 7.95743 8.02587 8.35844 8.66308 9.06280 9.98896 10.23743 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.008193 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.395133 B = 3416.639915 C = 5525.923362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.078 3.922 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.441 4.441 8 H 0.086 0.914 9 C 0.420 3.580 10 N -0.537 5.537 11 C 0.107 3.893 12 C -0.130 4.130 13 C -0.125 4.125 14 C -0.183 4.183 15 C -0.100 4.100 16 C 0.001 3.999 17 N -0.535 5.535 18 C 0.145 3.855 19 C -0.122 4.122 20 C -0.115 4.115 21 C 0.055 3.945 22 N -0.839 5.839 23 C -0.124 4.124 24 H 0.279 0.721 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.338 0.662 36 H 0.338 0.662 37 H 0.065 0.935 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.784 -6.081 -3.447 11.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.479 4.479 8 H 0.104 0.896 9 C 0.183 3.817 10 N -0.260 5.260 11 C -0.021 4.021 12 C -0.151 4.151 13 C -0.145 4.145 14 C -0.204 4.204 15 C -0.122 4.122 16 C -0.107 4.107 17 N -0.231 5.231 18 C 0.021 3.979 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.056 4.056 22 N -0.368 5.368 23 C -0.162 4.162 24 H 0.090 0.910 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.084 0.916 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.807 -5.417 -2.727 9.886 hybrid contribution 1.360 0.340 -1.025 1.736 sum 9.167 -5.076 -3.752 11.130 Atomic orbital electron populations 1.69968 1.07172 1.28608 1.28145 1.25846 0.94882 1.00704 0.93525 0.86253 0.79906 0.80049 0.79841 1.18917 1.20014 1.18869 1.18442 0.93926 0.87458 1.48071 0.89605 1.20428 0.87207 0.83537 0.90486 1.71391 1.09163 1.12874 1.32598 1.19577 0.92099 0.91550 0.98865 1.19762 0.95006 0.93169 1.07189 1.20196 0.96888 0.93514 1.03939 1.20285 0.91926 0.97725 1.10440 1.19593 0.96971 0.90338 1.05290 1.18850 0.89781 0.91442 1.10615 1.45488 1.03805 1.06126 1.67663 1.21219 0.80248 1.01083 0.95324 1.22823 0.95198 0.98328 0.97896 1.23044 0.95160 0.97177 0.99945 1.22864 0.95332 0.90569 0.96809 1.58881 1.08270 1.17306 1.52369 1.23011 0.96395 0.98232 0.98587 0.90970 0.87551 0.87954 0.87978 0.88669 0.90054 0.91322 0.88557 0.89502 0.91994 0.92427 0.85016 0.84992 0.91618 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.09 11.85 55.57 0.66 -18.43 16 2 C 0.08 1.92 5.50 -17.29 -0.10 1.83 16 3 Si 0.92 17.91 29.56 -169.99 -5.03 12.88 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.44 -11.22 8.99 -38.05 -0.34 -11.56 16 8 H 0.09 1.97 7.10 -52.49 -0.37 1.60 16 9 C 0.42 11.27 7.41 -155.69 -1.15 10.11 16 10 N -0.54 -15.49 9.33 -10.31 -0.10 -15.59 16 11 C 0.11 2.82 7.21 -84.89 -0.61 2.21 16 12 C -0.13 -3.03 10.07 -39.40 -0.40 -3.43 16 13 C -0.12 -2.51 9.96 -39.96 -0.40 -2.91 16 14 C -0.18 -3.57 10.04 -39.38 -0.40 -3.96 16 15 C -0.10 -2.08 10.04 -39.51 -0.40 -2.48 16 16 C 0.00 0.02 6.88 -83.75 -0.58 -0.56 16 17 N -0.54 -12.45 2.86 -113.48 -0.32 -12.77 16 18 C 0.15 2.65 5.73 -4.04 -0.02 2.62 16 19 C -0.12 -1.95 3.96 -89.81 -0.36 -2.31 16 20 C -0.12 -1.72 7.45 -25.83 -0.19 -1.91 16 21 C 0.06 0.68 4.96 -66.81 -0.33 0.35 16 22 N -0.84 -8.71 9.58 -3.90 -0.04 -8.75 16 23 C -0.12 -1.56 7.43 -25.92 -0.19 -1.75 16 24 H 0.28 6.73 8.29 -40.82 -0.34 6.39 16 25 H 0.11 2.37 8.06 -52.48 -0.42 1.95 16 26 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 27 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.10 1.76 7.77 -52.48 -0.41 1.35 16 29 H 0.08 1.43 7.32 -51.93 -0.38 1.05 16 30 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16 31 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.09 1.33 7.63 -51.93 -0.40 0.94 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.34 3.05 9.08 -39.29 -0.36 2.70 16 36 H 0.34 2.90 9.07 -39.29 -0.36 2.55 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -30.12 319.08 -10.67 -40.79 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.19 Total: 10.81 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -5.46 Total: -13.75 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.20 Total: -55.54 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.12 -10.67 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699224880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.053 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds