Wall clock time and date at job start Mon Mar 30 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30579 * 1 3 3 Si 1.86798 * 120.00359 * 2 1 4 4 H 1.48501 * 109.47035 * 240.00031 * 3 2 1 5 5 H 1.48494 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47101 * 119.99903 * 3 2 1 7 7 C 1.40352 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.40196 * 119.99762 * 0.02562 * 7 2 1 10 10 N 1.32461 * 125.30169 * 359.96116 * 9 7 2 11 11 C 1.33973 * 109.78059 * 180.02562 * 10 9 7 12 12 C 1.40532 * 133.19634 * 179.97438 * 11 10 9 13 13 C 1.36355 * 119.85015 * 179.97438 * 12 11 10 14 14 C 1.39041 * 120.75939 * 359.97438 * 13 12 11 15 15 C 1.37961 * 120.57213 * 0.02562 * 14 13 12 16 16 C 1.38717 * 119.76670 * 359.97438 * 15 14 13 17 17 N 1.37844 * 125.30601 * 179.97438 * 9 7 2 18 18 C 1.46500 * 126.53563 * 359.93965 * 17 9 7 19 19 C 1.53001 * 109.47646 * 270.02574 * 18 17 9 20 20 C 1.53777 * 113.61490 * 274.13872 * 19 18 17 21 21 C 1.53948 * 87.02094 * 220.04444 * 20 19 18 22 22 N 1.46903 * 113.67096 * 139.93244 * 21 20 19 23 23 C 1.53776 * 113.61593 * 176.52962 * 19 18 17 24 24 H 0.97007 * 119.99600 * 0.02562 * 1 2 3 25 25 H 1.08006 * 120.07641 * 359.97438 * 12 11 10 26 26 H 1.08001 * 119.62195 * 179.72324 * 13 12 11 27 27 H 1.07996 * 119.71685 * 179.97438 * 14 13 12 28 28 H 1.08004 * 120.11978 * 180.02562 * 15 14 13 29 29 H 1.08997 * 109.47347 * 30.03005 * 18 17 9 30 30 H 1.09004 * 109.47336 * 150.02340 * 18 17 9 31 31 H 1.08998 * 112.84474 * 45.33010 * 19 18 17 32 32 H 1.08998 * 113.61613 * 334.56395 * 20 19 18 33 33 H 1.09004 * 113.61524 * 105.46440 * 20 19 18 34 34 H 1.09003 * 113.61930 * 270.80086 * 21 20 19 35 35 H 1.00900 * 111.00052 * 82.43837 * 22 21 20 36 36 H 1.00899 * 111.00389 * 206.40135 * 22 21 20 37 37 H 1.08999 * 113.61614 * 254.53095 * 23 19 18 38 38 H 1.09002 * 113.61583 * 25.34787 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0936 1.6963 -1.2125 5 1 1.2750 2.7464 0.0006 6 1 3.0936 1.6963 1.2125 7 6 2.0075 -1.2155 0.0005 8 1 3.0875 -1.2156 0.0010 9 6 1.3065 -2.4296 0.0005 10 7 -0.0125 -2.5519 0.0008 11 6 -0.3475 -3.8491 0.0013 12 6 -1.5800 -4.5242 0.0022 13 6 -1.6070 -5.8875 0.0019 14 6 -0.4266 -6.6222 0.0003 15 6 0.7968 -5.9844 -0.0006 16 6 0.8509 -4.5983 -0.0004 17 7 1.8823 -3.6820 0.0005 18 6 3.3161 -3.9827 -0.0007 19 6 3.8141 -4.0874 -1.4436 20 6 3.6323 -5.4853 -2.0581 21 6 5.0167 -5.2935 -2.7037 22 7 5.8471 -6.5052 -2.6894 23 6 5.3302 -4.3183 -1.5568 24 1 -0.4850 0.8401 -0.0004 25 1 -2.5038 -3.9646 0.0030 26 1 -2.5563 -6.4026 0.0071 27 1 -0.4676 -7.7014 0.0006 28 1 1.7092 -6.5623 -0.0022 29 1 3.8548 -3.1863 0.5127 30 1 3.4895 -4.9283 0.5130 31 1 3.4467 -3.2806 -2.0777 32 1 3.6022 -6.2864 -1.3196 33 1 2.8172 -5.5425 -2.7795 34 1 4.9794 -4.8176 -3.6837 35 1 5.6090 -7.1158 -3.4567 36 1 6.8285 -6.2713 -2.7044 37 1 5.8840 -3.4347 -1.8740 38 1 5.7655 -4.7984 -0.6803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699224880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:38 Heat of formation + Delta-G solvation = 61.886631 kcal Electronic energy + Delta-G solvation = -20607.330855 eV Core-core repulsion = 17642.456400 eV Total energy + Delta-G solvation = -2964.874455 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.18388 -40.03085 -37.74061 -35.42851 -34.64192 -32.74455 -31.05211 -30.38959 -27.91992 -27.56553 -26.63206 -23.25516 -23.03433 -22.32649 -21.06726 -20.30253 -18.77969 -17.84037 -17.62455 -16.82868 -16.54264 -16.29067 -16.20199 -15.65475 -15.21767 -14.80662 -14.57827 -14.39407 -14.16817 -13.46009 -13.33069 -13.20865 -12.99453 -12.78563 -12.43458 -12.31153 -12.21580 -11.99258 -11.91030 -11.87964 -11.65348 -11.14973 -11.03441 -10.70114 -9.78413 -9.65392 -9.00176 -8.58769 -8.48204 -6.52631 0.53655 1.04144 1.40253 1.46806 1.54774 2.15634 2.36505 2.43262 3.19696 3.53054 3.56595 3.65883 3.73960 3.78526 3.98191 4.04288 4.25420 4.33062 4.41870 4.48487 4.51846 4.69852 4.80756 4.84245 4.87956 4.93654 5.01126 5.02966 5.16957 5.23218 5.32800 5.44649 5.60266 5.71463 5.94091 6.00566 6.19623 6.26419 6.28102 6.56620 6.62861 6.81093 7.24152 8.10915 8.44439 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.008193 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.395133 B = 3416.639915 C = 5525.923362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.031 3.969 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.468 4.468 8 H 0.101 0.899 9 C 0.392 3.608 10 N -0.587 5.587 11 C 0.049 3.951 12 C -0.150 4.150 13 C -0.118 4.118 14 C -0.165 4.165 15 C -0.102 4.102 16 C -0.012 4.012 17 N -0.534 5.534 18 C 0.141 3.859 19 C -0.127 4.127 20 C -0.115 4.115 21 C 0.070 3.930 22 N -0.840 5.840 23 C -0.107 4.107 24 H 0.282 0.718 25 H 0.101 0.899 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.347 0.653 36 H 0.351 0.649 37 H 0.078 0.922 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.900 -8.022 -3.660 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.192 4.192 3 Si 0.817 3.183 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.506 4.506 8 H 0.119 0.881 9 C 0.153 3.847 10 N -0.312 5.312 11 C -0.077 4.077 12 C -0.171 4.171 13 C -0.138 4.138 14 C -0.185 4.185 15 C -0.124 4.124 16 C -0.121 4.121 17 N -0.228 5.228 18 C 0.019 3.981 19 C -0.147 4.147 20 C -0.153 4.153 21 C -0.042 4.042 22 N -0.371 5.371 23 C -0.146 4.146 24 H 0.093 0.907 25 H 0.119 0.881 26 H 0.160 0.840 27 H 0.166 0.834 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.097 0.903 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.948 -7.421 -2.946 12.756 hybrid contribution 0.603 0.691 -0.953 1.322 sum 10.551 -6.731 -3.899 13.108 Atomic orbital electron populations 1.70123 1.09357 1.29764 1.30163 1.26963 0.95592 1.04522 0.92098 0.85033 0.78350 0.74533 0.80389 1.17789 1.19639 1.17747 1.18886 0.94756 0.87839 1.49071 0.88078 1.20770 0.87372 0.85174 0.91421 1.71243 1.10931 1.14862 1.34145 1.20124 0.94341 0.91603 1.01610 1.20038 0.94045 0.94860 1.08169 1.20634 0.99198 0.92126 1.01828 1.20878 0.90868 0.99956 1.06840 1.19990 0.98917 0.89045 1.04415 1.19221 0.89185 0.92689 1.10959 1.45647 1.05474 1.05017 1.66699 1.21521 0.77714 1.01753 0.97143 1.22703 0.98031 0.98131 0.95801 1.23007 0.96390 0.96215 0.99667 1.22639 0.93751 0.91136 0.96659 1.58786 1.08955 1.16375 1.53002 1.22937 0.93570 0.98903 0.99161 0.90736 0.88118 0.84012 0.83445 0.85966 0.89952 0.89708 0.91549 0.89481 0.94002 0.92096 0.83958 0.83450 0.90340 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.44 11.85 21.89 0.26 -43.18 16 2 C 0.03 1.56 5.50 85.39 0.47 2.03 16 3 Si 1.00 37.47 29.56 68.60 2.03 39.50 16 4 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.47 -24.82 8.99 23.26 0.21 -24.61 16 8 H 0.10 4.78 7.10 -2.91 -0.02 4.76 16 9 C 0.39 22.15 7.41 133.70 0.99 23.14 16 10 N -0.59 -36.06 9.33 -186.53 -1.74 -37.80 16 11 C 0.05 2.69 7.21 40.14 0.29 2.98 16 12 C -0.15 -7.15 10.07 22.39 0.23 -6.92 16 13 C -0.12 -4.48 9.96 22.02 0.22 -4.26 16 14 C -0.17 -5.86 10.04 22.40 0.22 -5.63 16 15 C -0.10 -4.06 10.04 22.32 0.22 -3.83 16 16 C -0.01 -0.60 6.88 39.05 0.27 -0.34 16 17 N -0.53 -25.59 2.86 -512.94 -1.46 -27.05 16 18 C 0.14 5.12 5.73 86.38 0.49 5.62 16 19 C -0.13 -4.00 3.96 -10.27 -0.04 -4.04 16 20 C -0.11 -3.28 7.45 31.18 0.23 -3.05 16 21 C 0.07 1.55 4.96 45.50 0.23 1.77 16 22 N -0.84 -14.80 9.58 -166.24 -1.59 -16.39 16 23 C -0.11 -2.46 7.43 31.12 0.23 -2.23 16 24 H 0.28 14.42 8.29 -92.70 -0.77 13.65 16 25 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 26 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 27 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 28 H 0.12 4.14 7.77 -2.91 -0.02 4.11 16 29 H 0.08 2.92 7.32 -2.39 -0.02 2.90 16 30 H 0.08 2.76 7.88 -2.39 -0.02 2.74 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.09 2.48 7.63 -2.39 -0.02 2.46 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.35 5.23 9.08 -89.69 -0.81 4.42 16 36 H 0.35 4.80 9.07 -89.69 -0.81 3.99 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 2.10 8.10 -2.39 -0.02 2.08 16 Total: -1.00 -70.59 319.08 1.21 -69.37 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.54 Total: 34.93 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 4.26 Total: -19.37 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -4.54 Total: -124.43 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Total: -70.59 1.21 -69.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699224880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.260 kcal (2) G-P(sol) polarization free energy of solvation -70.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds