Wall clock time and date at job start Mon Mar 30 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 119.99980 * 2 1 4 4 H 1.48493 * 109.47060 * 240.00059 * 3 2 1 5 5 H 1.48497 * 109.46840 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47035 * 119.99663 * 3 2 1 7 7 C 1.37877 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99951 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99631 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46756 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47130 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47472 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47280 * 180.02562 * 12 11 10 14 14 C 1.44847 * 111.03728 * 61.93946 * 13 12 11 15 15 C 1.54440 * 109.05966 * 219.91930 * 14 13 12 16 16 O 1.36475 * 111.35075 * 284.00095 * 15 14 13 17 17 C 1.43663 * 117.39348 * 61.38908 * 16 15 14 18 18 C 1.51029 * 107.92073 * 279.20112 * 17 16 15 19 19 H 1.08996 * 109.02960 * 331.38114 * 18 17 16 20 20 C 1.50701 * 109.02748 * 212.46474 * 18 17 16 21 21 O 1.20827 * 119.99999 * 239.99607 * 20 18 17 22 22 O 1.34230 * 119.99974 * 60.00286 * 20 18 17 23 23 C 1.48068 * 110.99840 * 190.00008 * 13 12 11 24 24 H 0.97008 * 120.00361 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47037 * 60.00114 * 9 7 2 26 26 H 1.08998 * 109.47154 * 299.99675 * 9 7 2 27 27 H 1.09002 * 109.47001 * 59.99859 * 10 9 7 28 28 H 1.08998 * 109.47190 * 299.99856 * 10 9 7 29 29 H 1.09002 * 109.47159 * 60.00120 * 11 10 9 30 30 H 1.08998 * 109.47101 * 300.00075 * 11 10 9 31 31 H 1.09002 * 109.46911 * 59.99869 * 12 11 10 32 32 H 1.08998 * 109.46938 * 300.00076 * 12 11 10 33 33 H 1.08999 * 109.59588 * 100.01563 * 14 13 12 34 34 H 1.08999 * 109.49368 * 339.76282 * 14 13 12 35 35 H 1.09002 * 109.09302 * 163.53817 * 15 14 13 36 36 H 1.08999 * 109.09201 * 44.46300 * 15 14 13 37 37 H 1.08998 * 109.76725 * 38.80829 * 17 16 15 38 38 H 1.09005 * 109.77144 * 159.59331 * 17 16 15 39 39 H 0.96698 * 116.99926 * 179.97438 * 22 20 18 40 40 H 1.08996 * 108.94547 * 71.10483 * 23 13 12 41 41 H 1.08998 * 108.94582 * 312.48026 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4745 -6.1500 0.0018 13 7 1.7401 -7.4222 0.0018 14 6 0.9298 -7.5548 -1.1915 15 6 -0.4272 -8.1869 -0.8120 16 8 -0.3058 -9.5279 -0.5895 17 6 0.5606 -9.9451 0.4778 18 6 1.9804 -9.9118 -0.0361 19 1 1.9734 -10.0902 -1.1114 20 6 2.7724 -11.0027 0.6374 21 8 3.7421 -10.7230 1.3018 22 8 2.4008 -12.2851 0.4992 23 6 2.6537 -8.5623 0.2425 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6042 0.8905 28 1 2.8719 -3.6043 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8540 -5.0445 0.8914 31 1 3.1012 -6.0918 0.8918 32 1 3.1012 -6.0927 -0.8881 33 1 1.4410 -8.1939 -1.9113 34 1 0.7637 -6.5706 -1.6295 35 1 -1.1363 -8.0228 -1.6233 36 1 -0.8031 -7.7081 0.0922 37 1 0.4583 -9.2646 1.3231 38 1 0.3038 -10.9586 0.7864 39 1 2.9401 -12.9494 0.9495 40 1 2.9828 -8.5388 1.2813 41 1 3.5244 -8.4609 -0.4053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700433460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:03 Heat of formation + Delta-G solvation = -144.953769 kcal Electronic energy + Delta-G solvation = -21091.244859 eV Core-core repulsion = 17777.799461 eV Total energy + Delta-G solvation = -3313.445398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07449 -39.60540 -37.13929 -36.52224 -34.55584 -33.43331 -32.07849 -29.45875 -27.99807 -26.46976 -24.80568 -23.49326 -22.39530 -21.02226 -20.04455 -19.95646 -18.53798 -17.49523 -16.97571 -16.42974 -16.17420 -15.93187 -15.55976 -14.85004 -14.58958 -14.53483 -14.28692 -13.77469 -13.61411 -12.94932 -12.47313 -12.39912 -12.05259 -11.89456 -11.82475 -11.72893 -11.35520 -11.23322 -10.96102 -10.93110 -10.69562 -10.51377 -10.50165 -10.35532 -9.77536 -9.61030 -9.26969 -9.02616 -8.32924 -8.29917 -5.97801 -4.00100 1.77944 2.49110 3.34249 3.38513 3.41068 3.64383 3.79062 4.17975 4.43972 4.47697 4.80118 4.90553 5.01676 5.08057 5.21347 5.27776 5.36972 5.38137 5.45168 5.48913 5.54915 5.71227 5.79480 5.84820 5.89859 6.08524 6.15543 6.18403 6.48912 6.79567 6.90993 6.98166 7.08643 7.20383 7.35348 7.48190 7.70381 7.86154 8.02964 8.45819 9.07157 9.63786 11.13488 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038230 B = 0.003012 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.226731 B = 9295.004528 C = 9850.997365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.062 3.938 13 N -0.553 5.553 14 C 0.007 3.993 15 C 0.073 3.927 16 O -0.376 6.376 17 C 0.082 3.918 18 C -0.114 4.114 19 H 0.118 0.882 20 C 0.489 3.511 21 O -0.509 6.509 22 O -0.513 6.513 23 C 0.071 3.929 24 H 0.261 0.739 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.412 0.588 40 H 0.091 0.909 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.896 -24.080 -0.779 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.153 4.153 12 C -0.064 4.064 13 N -0.278 5.278 14 C -0.121 4.121 15 C -0.006 4.006 16 O -0.294 6.294 17 C 0.006 3.994 18 C -0.134 4.134 19 H 0.136 0.864 20 C 0.330 3.670 21 O -0.397 6.397 22 O -0.325 6.325 23 C -0.056 4.056 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.271 0.729 40 H 0.109 0.891 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.378 -23.706 -0.536 23.752 hybrid contribution 1.690 0.746 -0.290 1.870 sum 3.067 -22.960 -0.826 23.178 Atomic orbital electron populations 1.69953 1.06040 1.26651 1.50917 1.25025 0.94844 0.99210 0.95395 0.86674 0.79600 0.83226 0.78595 1.20293 1.21287 1.20251 1.21254 0.92984 0.91236 1.50500 0.92837 1.19074 0.93979 0.91286 0.97128 1.21600 0.99127 0.93894 1.00143 1.21751 0.97848 0.93565 1.02098 1.22218 0.95979 0.87514 1.00707 1.60793 1.25966 1.02159 1.38888 1.22972 0.95314 1.02557 0.91266 1.21925 0.95682 0.81576 1.01372 1.86500 1.65653 1.24297 1.52954 1.22324 0.85346 1.01499 0.90252 1.21594 0.97131 0.91747 1.02883 0.86406 1.23149 0.82891 0.82999 0.77951 1.90748 1.27346 1.83501 1.38062 1.84534 1.58946 1.17657 1.71374 1.22205 0.93092 0.87048 1.03269 0.92978 0.96761 0.96607 0.93395 0.93662 0.92371 0.91569 0.90761 0.94950 0.93620 0.88973 0.88481 0.92873 0.90441 0.88194 0.72913 0.89050 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.11 -1.89 5.12 -26.73 -0.14 -2.03 16 12 C 0.06 0.86 4.88 -3.82 -0.02 0.84 16 13 N -0.55 -6.73 3.96 -234.14 -0.93 -7.66 16 14 C 0.01 0.08 5.19 -4.17 -0.02 0.06 16 15 C 0.07 0.77 6.54 37.91 0.25 1.01 16 16 O -0.38 -4.03 10.04 -21.27 -0.21 -4.25 16 17 C 0.08 0.76 5.96 36.17 0.22 0.98 16 18 C -0.11 -1.06 2.18 -92.57 -0.20 -1.26 16 19 H 0.12 1.05 7.29 -51.93 -0.38 0.67 16 20 C 0.49 4.51 7.50 36.01 0.27 4.78 16 21 O -0.51 -6.22 16.29 -18.75 -0.31 -6.53 16 22 O -0.51 -3.36 12.92 -39.26 -0.51 -3.87 16 23 C 0.07 0.78 4.43 -2.99 -0.01 0.77 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.94 6.14 -51.93 -0.32 0.62 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.49 7.00 -51.93 -0.36 0.12 16 34 H 0.09 1.10 5.57 -51.93 -0.29 0.81 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 37 H 0.08 0.77 7.61 -51.93 -0.40 0.37 16 38 H 0.10 0.79 7.39 -51.93 -0.38 0.40 16 39 H 0.41 0.96 9.10 45.56 0.41 1.37 16 40 H 0.09 1.09 7.29 -51.93 -0.38 0.71 16 41 H 0.04 0.48 8.04 -51.93 -0.42 0.06 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -32.72 328.52 -7.48 -40.20 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.85 Total: -2.75 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -0.35 Total: -10.47 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.19 Total: -34.09 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.03 Total: -14.65 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.72 -7.48 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700433460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.753 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds