Wall clock time and date at job start Mon Mar 30 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00148 * 2 1 4 4 H 1.09001 * 110.64229 * 26.85242 * 3 2 1 5 5 C 1.54931 * 110.72356 * 263.50445 * 3 2 1 6 6 N 1.48542 * 103.22694 * 204.22827 * 5 3 2 7 7 C 1.46894 * 110.99968 * 159.72119 * 6 5 3 8 8 C 1.52997 * 109.47515 * 52.60297 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00241 * 14 12 10 16 16 H 1.48494 * 109.47178 * 209.99936 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00183 * 14 12 10 18 18 C 1.47903 * 105.81923 * 39.20712 * 6 5 3 19 19 C 1.52994 * 109.92005 * 94.02339 * 18 6 5 20 20 C 1.50706 * 109.91528 * 215.32173 * 18 6 5 21 21 O 1.20828 * 119.99873 * 144.99576 * 20 18 6 22 22 O 1.34227 * 119.99902 * 324.99588 * 20 18 6 23 23 C 1.53999 * 107.05805 * 334.66976 * 18 6 5 24 24 H 1.08996 * 109.46735 * 299.99671 * 1 2 3 25 25 H 1.08994 * 109.47039 * 60.00202 * 1 2 3 26 26 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.08999 * 110.67219 * 85.79000 * 5 3 2 28 28 H 1.09005 * 110.66854 * 322.65930 * 5 3 2 29 29 H 1.09002 * 109.47104 * 292.60029 * 7 6 5 30 30 H 1.08998 * 109.46828 * 172.60861 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 33 33 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 34 34 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 35 35 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47014 * 59.99902 * 19 18 6 37 37 H 1.09001 * 109.47367 * 179.97438 * 19 18 6 38 38 H 1.09001 * 109.47089 * 299.99925 * 19 18 6 39 39 H 0.96695 * 117.00379 * 180.02562 * 22 20 18 40 40 H 1.08997 * 110.31146 * 120.14169 * 23 18 6 41 41 H 1.09001 * 110.31174 * 242.21538 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3352 2.0266 0.4607 5 6 2.3830 1.7396 -1.4398 6 7 3.4569 2.7431 -1.2249 7 6 4.2631 2.9198 -2.4400 8 6 3.3419 3.2191 -3.6243 9 6 4.1818 3.4025 -4.8900 10 6 3.2743 3.6979 -6.0564 11 1 2.2056 3.7493 -5.9097 12 6 3.8087 3.9026 -7.3109 13 7 5.1101 3.8406 -7.4895 14 14 2.6839 4.2681 -8.7569 15 1 2.4880 5.7356 -8.8729 16 1 3.2989 3.7506 -10.0055 17 1 1.3708 3.6089 -8.5416 18 6 4.2808 2.2203 -0.1134 19 6 5.4645 1.4270 -0.6704 20 6 4.7771 3.3604 0.7381 21 8 4.8912 3.2173 1.9324 22 8 5.0924 4.5348 0.1697 23 6 3.3768 1.2958 0.7230 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.5267 2.1932 -1.9387 28 1 2.7583 0.8913 -2.0124 29 1 4.8256 2.0075 -2.6387 30 1 4.9553 3.7499 -2.2992 31 1 2.7795 4.1314 -3.4257 32 1 2.6498 2.3889 -3.7651 33 1 4.8742 4.2325 -4.7495 34 1 4.7438 2.4900 -5.0885 35 1 5.4861 3.9849 -8.3719 36 1 6.0759 2.0777 -1.2957 37 1 6.0667 1.0457 0.1543 38 1 5.0946 0.5929 -1.2667 39 1 5.4067 5.2362 0.7565 40 1 3.7858 0.2857 0.7453 41 1 3.2730 1.6837 1.7363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702753806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:49 Heat of formation + Delta-G solvation = -134.723600 kcal Electronic energy + Delta-G solvation = -21844.532927 eV Core-core repulsion = 18531.531142 eV Total energy + Delta-G solvation = -3313.001785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98402 -39.12654 -37.32336 -36.13481 -34.22341 -32.34751 -31.19235 -29.97451 -26.92160 -26.16532 -25.94789 -24.04637 -22.64049 -21.48204 -19.72962 -19.36853 -17.98074 -17.12705 -16.96340 -16.17443 -15.70535 -15.34945 -15.23164 -14.52124 -14.43182 -14.42050 -13.76443 -13.72504 -13.00319 -12.73658 -12.69455 -12.37210 -12.21831 -11.88166 -11.73538 -11.62758 -11.42861 -11.38723 -11.22236 -10.83894 -10.65772 -10.63208 -10.52564 -10.32646 -9.75663 -9.61629 -9.35413 -9.05823 -8.37366 -8.33878 -5.99295 -4.01311 2.16430 3.02108 3.32345 3.38527 3.40577 3.42160 4.12580 4.31708 4.47575 4.56380 4.69899 4.93382 5.10357 5.19384 5.23869 5.25264 5.36727 5.46319 5.48252 5.57376 5.64427 5.65731 5.79234 5.81520 5.83753 5.95546 6.03275 6.29710 6.48328 6.60723 6.69577 6.84392 7.07293 7.12765 7.22881 7.68319 7.83206 7.94428 8.00854 8.43902 9.05647 9.62662 11.12115 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018621 B = 0.004632 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.343389 B = 6043.109142 C = 7105.298518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.082 3.918 4 H 0.078 0.922 5 C 0.018 3.982 6 N -0.495 5.495 7 C 0.040 3.960 8 C -0.108 4.108 9 C 0.023 3.977 10 C -0.518 4.518 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.100 3.900 19 C -0.169 4.169 20 C 0.508 3.492 21 O -0.526 6.526 22 O -0.494 6.494 23 C -0.114 4.114 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.017 0.983 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.403 0.597 40 H 0.093 0.907 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -4.975 17.053 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.023 3.977 4 H 0.096 0.904 5 C -0.110 4.110 6 N -0.221 5.221 7 C -0.087 4.087 8 C -0.146 4.146 9 C -0.015 4.015 10 C -0.557 4.557 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C 0.008 3.992 19 C -0.227 4.227 20 C 0.350 3.650 21 O -0.415 6.415 22 O -0.304 6.304 23 C -0.152 4.152 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.261 0.739 40 H 0.112 0.888 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.937 -4.964 17.101 18.237 hybrid contribution -0.143 0.213 -0.768 0.810 sum -4.081 -4.751 16.333 17.493 Atomic orbital electron populations 1.22811 0.80817 1.02756 1.00232 1.87894 1.19918 1.27090 1.94887 1.23074 0.94466 0.84672 0.95478 0.90373 1.23679 0.96150 0.94704 0.96434 1.64895 1.10282 1.40770 1.06166 1.22700 0.96600 1.01034 0.88366 1.21719 0.98123 1.00536 0.94213 1.19057 0.95023 0.97004 0.90368 1.21235 0.93363 1.47928 0.93141 0.92751 1.25015 0.94969 0.95530 0.98918 1.69960 1.10546 1.50193 1.22840 0.86612 0.80874 0.78521 0.82097 1.20668 1.21263 1.19920 1.21462 0.95208 0.89502 0.93029 1.22417 0.97259 1.00900 1.02154 1.23161 0.72412 0.82871 0.86591 1.90681 1.51334 1.82770 1.16705 1.84678 1.77114 1.23006 1.45570 1.22546 0.93331 1.00024 0.99330 0.94023 0.93611 0.89628 0.88937 0.91904 0.93688 0.89940 0.92579 0.93417 0.96485 0.96790 0.93041 0.90146 0.91351 0.90158 0.73874 0.88829 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.37 16 2 O -0.38 -4.54 10.44 -35.23 -0.37 -4.91 16 3 C 0.08 0.98 3.56 -24.87 -0.09 0.89 16 4 H 0.08 0.87 7.82 -51.93 -0.41 0.47 16 5 C 0.02 0.25 4.81 -1.90 -0.01 0.24 16 6 N -0.50 -7.25 4.80 -216.31 -1.04 -8.29 16 7 C 0.04 0.67 3.87 -3.83 -0.01 0.65 16 8 C -0.11 -2.18 4.81 -26.73 -0.13 -2.31 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 14 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.10 1.30 0.84 -131.68 -0.11 1.19 16 19 C -0.17 -2.02 6.92 37.15 0.26 -1.77 16 20 C 0.51 6.89 7.20 36.01 0.26 7.15 16 21 O -0.53 -7.94 16.40 -18.75 -0.31 -8.25 16 22 O -0.49 -6.05 12.54 -39.25 -0.49 -6.55 16 23 C -0.11 -1.37 5.83 -25.37 -0.15 -1.52 16 24 H 0.04 0.32 8.11 -51.93 -0.42 -0.10 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.27 7.66 -51.93 -0.40 0.88 16 28 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 29 H 0.04 0.74 5.68 -51.93 -0.29 0.44 16 30 H 0.08 1.44 7.60 -51.93 -0.39 1.04 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.94 6.79 -51.93 -0.35 0.59 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.01 6.61 -51.93 -0.34 0.67 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.94 7.73 -51.93 -0.40 0.54 16 39 H 0.40 3.04 9.10 45.56 0.41 3.45 16 40 H 0.09 1.06 7.62 -51.93 -0.40 0.66 16 41 H 0.09 1.13 6.81 -51.93 -0.35 0.78 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -32.50 330.98 -6.78 -39.28 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.84 Total: 0.30 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 0.56 Total: -7.06 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.30 Total: -34.39 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -1.17 Total: -19.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.50 -6.78 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702753806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.446 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds