Wall clock time and date at job start Mon Mar 30 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99719 * 2 1 4 4 H 1.08999 * 110.87687 * 32.39044 * 3 2 1 5 5 C 1.54910 * 110.99198 * 268.54218 * 3 2 1 6 6 N 1.47840 * 104.79593 * 204.84061 * 5 3 2 7 7 C 1.46899 * 111.00024 * 146.36222 * 6 5 3 8 8 C 1.52997 * 109.47052 * 76.19942 * 7 6 5 9 9 C 1.52999 * 109.47360 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47314 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00188 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00160 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99966 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99939 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47236 * 270.00015 * 14 12 10 16 16 H 1.48503 * 109.47097 * 29.99993 * 14 12 10 17 17 H 1.48501 * 109.47242 * 149.99547 * 14 12 10 18 18 C 1.47452 * 108.56991 * 24.09846 * 6 5 3 19 19 C 1.52995 * 109.88649 * 239.60248 * 18 6 5 20 20 C 1.50697 * 109.89087 * 118.41328 * 18 6 5 21 21 O 1.20821 * 120.00022 * 133.41657 * 20 18 6 22 22 O 1.34230 * 119.99874 * 313.42006 * 20 18 6 23 23 C 1.54318 * 107.23107 * 359.00709 * 18 6 5 24 24 H 1.09005 * 109.46633 * 59.99891 * 1 2 3 25 25 H 1.08990 * 109.47029 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47041 * 300.00839 * 1 2 3 27 27 H 1.08994 * 110.37232 * 86.01164 * 5 3 2 28 28 H 1.09005 * 110.46451 * 323.71922 * 5 3 2 29 29 H 1.09002 * 109.47165 * 316.20220 * 7 6 5 30 30 H 1.08993 * 109.47477 * 196.20486 * 7 6 5 31 31 H 1.09002 * 109.46909 * 60.00120 * 8 7 6 32 32 H 1.08997 * 109.47911 * 300.00558 * 8 7 6 33 33 H 1.08999 * 109.47294 * 60.00627 * 9 8 7 34 34 H 1.09000 * 109.47090 * 300.00292 * 9 8 7 35 35 H 0.97000 * 119.99823 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.47200 * 59.99689 * 19 18 6 37 37 H 1.08998 * 109.47177 * 179.97438 * 19 18 6 38 38 H 1.08999 * 109.47452 * 300.00066 * 19 18 6 39 39 H 0.96696 * 116.99766 * 180.02562 * 22 20 18 40 40 H 1.08998 * 110.70711 * 219.33459 * 23 18 6 41 41 H 1.09005 * 110.85489 * 96.16826 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3826 2.0101 0.5456 5 6 2.2696 1.7975 -1.4458 6 7 3.3629 2.7845 -1.3184 7 6 4.2379 2.7560 -2.4980 8 6 3.5460 3.4656 -3.6635 9 6 4.4570 3.4354 -4.8923 10 6 3.7757 4.1349 -6.0402 11 1 2.7915 4.5590 -5.9066 12 6 4.4093 4.2344 -7.2607 13 7 3.8144 4.8444 -8.2626 14 14 6.1119 3.5016 -7.4917 15 1 7.1390 4.5199 -7.1552 16 1 6.2699 2.3254 -6.5990 17 1 6.2804 3.0767 -8.9046 18 6 4.1224 2.4879 -0.0899 19 6 4.0816 3.6935 0.8511 20 6 5.5500 2.1534 -0.4378 21 8 6.4567 2.6573 0.1816 22 8 5.8142 1.2957 -1.4360 23 6 3.4478 1.2738 0.5828 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 1.3758 2.2716 -1.8513 28 1 2.5795 0.9676 -2.0810 29 1 4.4435 1.7215 -2.7730 30 1 5.1745 3.2637 -2.2679 31 1 3.3403 4.5001 -3.3885 32 1 2.6093 2.9579 -3.8936 33 1 4.6622 2.4008 -5.1672 34 1 5.3939 3.9430 -4.6625 35 1 4.2600 4.9141 -9.1214 36 1 3.0469 3.9154 1.1127 37 1 4.6444 3.4669 1.7566 38 1 4.5239 4.5572 0.3546 39 1 6.7451 1.1119 -1.6220 40 1 3.4273 1.3953 1.6658 41 1 3.9540 0.3479 0.3097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702753808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:51 Heat of formation + Delta-G solvation = -128.971286 kcal Electronic energy + Delta-G solvation = -22054.493430 eV Core-core repulsion = 18741.741084 eV Total energy + Delta-G solvation = -3312.752346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27952 -39.04552 -37.18682 -36.36122 -34.43425 -32.47032 -31.04271 -30.32840 -27.10740 -26.53703 -26.04591 -23.71349 -22.56696 -21.47992 -19.99373 -19.75278 -18.16189 -17.34652 -16.73898 -16.63115 -15.70433 -15.53124 -15.16776 -14.70442 -14.44605 -14.29045 -13.81701 -13.72706 -13.34372 -12.83035 -12.66790 -12.45212 -12.24977 -12.06882 -11.91812 -11.65322 -11.59157 -11.49238 -11.34076 -11.05812 -10.80068 -10.66968 -10.47732 -9.92284 -9.83150 -9.67620 -9.58258 -9.16101 -8.51971 -8.41845 -6.02390 -3.99960 2.01142 2.83049 3.31663 3.38780 3.41271 3.42156 3.95012 4.25352 4.33218 4.46738 4.62059 4.83343 4.99565 5.14836 5.18006 5.20970 5.31583 5.41794 5.47487 5.51115 5.53654 5.61278 5.70752 5.74466 5.84680 5.92444 6.08965 6.21984 6.40499 6.47942 6.50570 6.78675 6.93490 6.98928 7.08469 7.34849 7.47263 7.78063 7.81893 8.56867 9.03191 9.60387 11.11220 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.005065 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.142782 B = 5526.752423 C = 6362.644561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.082 3.918 4 H 0.082 0.918 5 C 0.020 3.980 6 N -0.503 5.503 7 C 0.043 3.957 8 C -0.095 4.095 9 C -0.012 4.012 10 C -0.517 4.517 11 H 0.072 0.928 12 C 0.066 3.934 13 N -0.905 5.905 14 Si 0.880 3.120 15 H -0.278 1.278 16 H -0.266 1.266 17 H -0.288 1.288 18 C 0.108 3.892 19 C -0.118 4.118 20 C 0.476 3.524 21 O -0.513 6.513 22 O -0.507 6.507 23 C -0.124 4.124 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.014 0.986 34 H 0.009 0.991 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.403 0.597 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 -9.269 20.023 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.023 3.977 4 H 0.100 0.900 5 C -0.108 4.108 6 N -0.229 5.229 7 C -0.083 4.083 8 C -0.133 4.133 9 C -0.050 4.050 10 C -0.555 4.555 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.544 5.544 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.191 1.191 17 H -0.214 1.214 18 C 0.016 3.984 19 C -0.176 4.176 20 C 0.317 3.683 21 O -0.400 6.400 22 O -0.319 6.319 23 C -0.163 4.163 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.263 0.737 40 H 0.108 0.892 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.061 -8.673 20.120 22.122 hybrid contribution 1.735 -0.953 -0.605 2.070 sum -1.327 -9.626 19.514 21.800 Atomic orbital electron populations 1.22820 0.80623 1.02874 1.00342 1.87900 1.20057 1.26780 1.94895 1.23239 0.93814 0.84864 0.95763 0.89981 1.23628 0.95818 0.94586 0.96761 1.63912 1.10367 1.47177 1.01476 1.22986 0.94432 1.01038 0.89868 1.21451 0.98955 0.99815 0.93049 1.19542 0.95229 0.96676 0.93574 1.21137 1.04508 1.35760 0.94140 0.91010 1.25032 0.97707 0.94848 0.95937 1.69918 1.38353 1.43590 1.02537 0.86782 0.85117 0.80190 0.77208 1.20340 1.19071 1.21417 1.21971 0.85649 0.96700 0.94030 1.21659 1.02824 0.95735 0.97344 1.23892 0.92858 0.75299 0.76227 1.90698 1.47810 1.50553 1.50895 1.84919 1.35607 1.60887 1.50524 1.22840 0.95004 0.97419 1.01010 0.93501 0.89557 0.93926 0.89221 0.91586 0.91607 0.92029 0.92114 0.92725 0.96739 0.97279 0.92788 0.90707 0.91466 0.91182 0.73710 0.89186 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.89 101.05 1.10 1.34 16 2 O -0.38 -4.14 10.51 -35.23 -0.37 -4.51 16 3 C 0.08 0.86 3.48 -24.59 -0.09 0.77 16 4 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 5 C 0.02 0.26 5.87 -2.30 -0.01 0.24 16 6 N -0.50 -7.07 4.74 -217.08 -1.03 -8.10 16 7 C 0.04 0.72 3.34 -3.83 -0.01 0.70 16 8 C -0.09 -1.90 5.28 -26.73 -0.14 -2.04 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 11 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 14 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 18 C 0.11 1.33 1.10 -131.76 -0.15 1.19 16 19 C -0.12 -1.31 8.11 37.16 0.30 -1.01 16 20 C 0.48 6.54 5.23 36.00 0.19 6.73 16 21 O -0.51 -8.13 16.77 -18.75 -0.31 -8.45 16 22 O -0.51 -6.24 9.86 -39.26 -0.39 -6.63 16 23 C -0.12 -1.30 5.73 -24.90 -0.14 -1.45 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.28 8.11 -51.93 -0.42 -0.15 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.92 7.50 -51.93 -0.39 0.53 16 29 H 0.07 1.09 5.86 -51.93 -0.30 0.79 16 30 H 0.06 1.06 6.35 -51.93 -0.33 0.73 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.05 1.09 7.75 -51.93 -0.40 0.69 16 33 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 34 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.69 7.96 -51.93 -0.41 0.27 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.40 3.41 9.10 45.56 0.41 3.83 16 40 H 0.09 0.77 7.83 -51.93 -0.41 0.36 16 41 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -33.66 328.41 -6.50 -40.16 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.96 Total: 0.07 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 0.51 Total: -7.37 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.26 Total: -35.53 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.07 Total: -19.59 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.66 -6.50 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702753808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.811 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds