Wall clock time and date at job start Mon Mar 30 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99719 * 2 1 4 4 H 1.08999 * 110.87687 * 32.39044 * 3 2 1 5 5 C 1.54910 * 110.99198 * 268.54218 * 3 2 1 6 6 N 1.47840 * 104.79593 * 204.84061 * 5 3 2 7 7 C 1.46899 * 111.00024 * 146.36222 * 6 5 3 8 8 C 1.52997 * 109.47052 * 76.19942 * 7 6 5 9 9 C 1.52999 * 109.47360 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47314 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00188 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00160 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99966 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99939 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47236 * 270.00015 * 14 12 10 16 16 H 1.48503 * 109.47097 * 29.99993 * 14 12 10 17 17 H 1.48501 * 109.47242 * 149.99547 * 14 12 10 18 18 C 1.47452 * 108.56991 * 24.09846 * 6 5 3 19 19 C 1.52995 * 109.88649 * 239.60248 * 18 6 5 20 20 C 1.50697 * 109.89087 * 118.41328 * 18 6 5 21 21 O 1.20821 * 120.00022 * 133.41657 * 20 18 6 22 22 O 1.34230 * 119.99874 * 313.42006 * 20 18 6 23 23 C 1.54318 * 107.23107 * 359.00709 * 18 6 5 24 24 H 1.09005 * 109.46633 * 59.99891 * 1 2 3 25 25 H 1.08990 * 109.47029 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47041 * 300.00839 * 1 2 3 27 27 H 1.08994 * 110.37232 * 86.01164 * 5 3 2 28 28 H 1.09005 * 110.46451 * 323.71922 * 5 3 2 29 29 H 1.09002 * 109.47165 * 316.20220 * 7 6 5 30 30 H 1.08993 * 109.47477 * 196.20486 * 7 6 5 31 31 H 1.09002 * 109.46909 * 60.00120 * 8 7 6 32 32 H 1.08997 * 109.47911 * 300.00558 * 8 7 6 33 33 H 1.08999 * 109.47294 * 60.00627 * 9 8 7 34 34 H 1.09000 * 109.47090 * 300.00292 * 9 8 7 35 35 H 0.97000 * 119.99823 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.47200 * 59.99689 * 19 18 6 37 37 H 1.08998 * 109.47177 * 179.97438 * 19 18 6 38 38 H 1.08999 * 109.47452 * 300.00066 * 19 18 6 39 39 H 0.96696 * 116.99766 * 180.02562 * 22 20 18 40 40 H 1.08998 * 110.70711 * 219.33459 * 23 18 6 41 41 H 1.09005 * 110.85489 * 96.16826 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3826 2.0101 0.5456 5 6 2.2696 1.7975 -1.4458 6 7 3.3629 2.7845 -1.3184 7 6 4.2379 2.7560 -2.4980 8 6 3.5460 3.4656 -3.6635 9 6 4.4570 3.4354 -4.8923 10 6 3.7757 4.1349 -6.0402 11 1 2.7915 4.5590 -5.9066 12 6 4.4093 4.2344 -7.2607 13 7 3.8144 4.8444 -8.2626 14 14 6.1119 3.5016 -7.4917 15 1 7.1390 4.5199 -7.1552 16 1 6.2699 2.3254 -6.5990 17 1 6.2804 3.0767 -8.9046 18 6 4.1224 2.4879 -0.0899 19 6 4.0816 3.6935 0.8511 20 6 5.5500 2.1534 -0.4378 21 8 6.4567 2.6573 0.1816 22 8 5.8142 1.2957 -1.4360 23 6 3.4478 1.2738 0.5828 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 1.3758 2.2716 -1.8513 28 1 2.5795 0.9676 -2.0810 29 1 4.4435 1.7215 -2.7730 30 1 5.1745 3.2637 -2.2679 31 1 3.3403 4.5001 -3.3885 32 1 2.6093 2.9579 -3.8936 33 1 4.6622 2.4008 -5.1672 34 1 5.3939 3.9430 -4.6625 35 1 4.2600 4.9141 -9.1214 36 1 3.0469 3.9154 1.1127 37 1 4.6444 3.4669 1.7566 38 1 4.5239 4.5572 0.3546 39 1 6.7451 1.1119 -1.6220 40 1 3.4273 1.3953 1.6658 41 1 3.9540 0.3479 0.3097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702753808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:51 Heat of formation + Delta-G solvation = -154.140064 kcal Electronic energy + Delta-G solvation = -22055.584830 eV Core-core repulsion = 18741.741084 eV Total energy + Delta-G solvation = -3313.843746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30655 -39.99539 -38.11835 -37.39141 -36.11937 -34.32723 -32.29212 -31.54723 -28.45528 -27.35776 -27.20242 -24.80688 -24.08901 -22.58867 -21.62001 -20.75768 -19.22199 -18.96642 -18.15296 -17.61929 -16.75480 -16.59604 -16.28289 -16.11735 -15.69528 -15.30196 -15.08496 -14.85655 -14.70186 -14.52121 -13.91646 -13.66388 -13.40718 -13.19204 -12.99269 -12.90779 -12.73232 -12.63195 -12.39784 -12.29668 -12.19033 -11.91685 -11.77074 -11.53484 -11.47159 -11.39432 -11.24042 -10.76910 -10.60213 -9.54538 -8.29729 -6.33768 0.96688 1.34950 1.36517 1.48573 1.89973 2.35662 2.54654 2.97413 3.05559 3.38170 3.44118 3.71809 4.02650 4.07849 4.20192 4.30942 4.33022 4.53355 4.56741 4.61791 4.68668 4.74436 4.77511 4.81347 4.82001 4.91866 4.92327 4.95463 4.97638 5.09079 5.22984 5.48047 5.49050 5.56072 5.64805 5.78365 5.85478 6.23575 6.29281 6.74123 6.83439 7.30753 8.87246 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.005065 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.142782 B = 5526.752423 C = 6362.644561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.091 3.909 4 H 0.103 0.897 5 C 0.017 3.983 6 N -0.508 5.508 7 C 0.059 3.941 8 C -0.085 4.085 9 C -0.008 4.008 10 C -0.531 4.531 11 H 0.031 0.969 12 C 0.004 3.996 13 N -0.952 5.952 14 Si 0.951 3.049 15 H -0.268 1.268 16 H -0.245 1.245 17 H -0.283 1.283 18 C 0.104 3.896 19 C -0.115 4.115 20 C 0.476 3.524 21 O -0.538 6.538 22 O -0.510 6.510 23 C -0.118 4.118 24 H 0.045 0.955 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.021 0.979 34 H 0.014 0.986 35 H 0.266 0.734 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.420 0.580 40 H 0.115 0.885 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 -10.646 21.872 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.032 3.968 4 H 0.121 0.879 5 C -0.111 4.111 6 N -0.235 5.235 7 C -0.068 4.068 8 C -0.123 4.123 9 C -0.046 4.046 10 C -0.570 4.570 11 H 0.049 0.951 12 C -0.193 4.193 13 N -0.593 5.593 14 Si 0.774 3.226 15 H -0.193 1.193 16 H -0.168 1.168 17 H -0.208 1.208 18 C 0.014 3.986 19 C -0.173 4.173 20 C 0.318 3.682 21 O -0.427 6.427 22 O -0.324 6.324 23 C -0.156 4.156 24 H 0.064 0.936 25 H 0.116 0.884 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.282 0.718 40 H 0.133 0.867 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.352 -10.067 21.984 24.293 hybrid contribution 1.403 -0.506 -1.206 1.918 sum -0.950 -10.573 20.778 23.333 Atomic orbital electron populations 1.23015 0.79154 1.03985 1.01131 1.87880 1.21731 1.26918 1.94868 1.23189 0.94253 0.85259 0.94066 0.87900 1.23669 0.95159 0.93804 0.98487 1.63809 1.10393 1.48089 1.01167 1.22669 0.94060 1.00395 0.89666 1.21260 0.98342 0.99617 0.93126 1.19471 0.95610 0.96114 0.93429 1.21484 1.03366 1.35929 0.96173 0.95066 1.26028 1.02546 0.95273 0.95448 1.70072 1.40620 1.45291 1.03307 0.85653 0.79158 0.80102 0.77713 1.19324 1.16834 1.20840 1.22125 0.84916 0.98211 0.93395 1.21679 1.04112 0.94357 0.97156 1.24157 0.93168 0.74877 0.75973 1.90688 1.48606 1.51535 1.51831 1.84857 1.37245 1.60323 1.49976 1.22844 0.94527 0.95977 1.02298 0.93646 0.88417 0.92175 0.89333 0.93064 0.91343 0.92536 0.93365 0.93154 0.96097 0.96785 0.92495 0.88753 0.90383 0.93079 0.71810 0.86676 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.89 113.37 1.23 1.54 16 2 O -0.40 -7.75 10.51 -148.98 -1.57 -9.32 16 3 C 0.09 1.67 3.48 31.98 0.11 1.79 16 4 H 0.10 1.48 7.90 -2.39 -0.02 1.47 16 5 C 0.02 0.40 5.87 86.78 0.51 0.91 16 6 N -0.51 -13.62 4.74 -840.71 -3.98 -17.61 16 7 C 0.06 1.91 3.34 86.30 0.29 2.19 16 8 C -0.09 -3.43 5.28 30.59 0.16 -3.26 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.53 -31.38 9.66 25.60 0.25 -31.14 16 11 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 12 C 0.00 0.21 5.47 84.65 0.46 0.68 16 13 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 14 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.24 -10.64 6.54 99.48 0.65 -9.99 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 C 0.10 2.38 1.10 3.12 0.00 2.38 16 19 C -0.12 -2.32 8.11 71.98 0.58 -1.74 16 20 C 0.48 12.33 5.23 71.24 0.37 12.70 16 21 O -0.54 -16.34 16.77 21.98 0.37 -15.97 16 22 O -0.51 -11.67 9.86 -51.42 -0.51 -12.18 16 23 C -0.12 -2.16 5.73 31.78 0.18 -1.98 16 24 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 0.60 8.11 -2.39 -0.02 0.58 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 1.38 7.50 -2.38 -0.02 1.37 16 29 H 0.07 2.18 5.86 -2.39 -0.01 2.17 16 30 H 0.06 1.88 6.35 -2.39 -0.02 1.87 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 2.03 7.75 -2.39 -0.02 2.01 16 33 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 34 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 35 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.40 7.96 -2.39 -0.02 1.38 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.42 6.33 9.10 -74.06 -0.67 5.65 16 40 H 0.11 1.54 7.83 -2.39 -0.02 1.52 16 41 H 0.08 1.61 7.85 -2.38 -0.02 1.59 16 Total: -1.00 -73.15 328.41 1.06 -72.09 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.28 Total: 12.83 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 4.28 Total: -16.19 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -3.69 Total: -78.00 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.70 Total: -37.47 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -73.15 1.06 -72.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702753808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.049 kcal (2) G-P(sol) polarization free energy of solvation -73.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds