Wall clock time and date at job start Mon Mar 30 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99533 * 2 1 4 4 H 1.08999 * 110.64857 * 328.30356 * 3 2 1 5 5 C 1.54937 * 110.72359 * 91.45623 * 3 2 1 6 6 N 1.48538 * 103.22999 * 155.76666 * 5 3 2 7 7 C 1.46902 * 110.99982 * 200.28047 * 6 5 3 8 8 C 1.53001 * 109.46886 * 294.25757 * 7 6 5 9 9 C 1.53004 * 109.46611 * 185.27577 * 8 7 6 10 10 C 1.50701 * 109.46777 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00086 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99847 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99975 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00161 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47118 * 90.00442 * 14 12 10 16 16 H 1.48504 * 109.47249 * 210.00758 * 14 12 10 17 17 H 1.48500 * 109.46886 * 330.00353 * 14 12 10 18 18 C 1.47898 * 105.82011 * 320.79724 * 6 5 3 19 19 C 1.53002 * 109.91475 * 265.97251 * 18 6 5 20 20 C 1.50701 * 109.91895 * 144.87806 * 18 6 5 21 21 O 1.20821 * 119.99941 * 144.99423 * 20 18 6 22 22 O 1.34232 * 119.99761 * 324.99962 * 20 18 6 23 23 C 1.53994 * 107.06114 * 25.32474 * 18 6 5 24 24 H 1.08997 * 109.46838 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47034 * 300.00008 * 1 2 3 26 26 H 1.09001 * 109.47308 * 60.00085 * 1 2 3 27 27 H 1.09000 * 110.66720 * 274.20619 * 5 3 2 28 28 H 1.09007 * 110.66649 * 37.17053 * 5 3 2 29 29 H 1.08997 * 109.47309 * 54.25866 * 7 6 5 30 30 H 1.09002 * 109.46785 * 174.25809 * 7 6 5 31 31 H 1.09000 * 109.47238 * 305.27261 * 8 7 6 32 32 H 1.08992 * 109.47538 * 65.27558 * 8 7 6 33 33 H 1.09000 * 109.47061 * 299.99792 * 9 8 7 34 34 H 1.08999 * 109.47120 * 60.00179 * 9 8 7 35 35 H 0.97006 * 119.99723 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.47155 * 53.80003 * 19 18 6 37 37 H 1.09003 * 109.47020 * 173.79921 * 19 18 6 38 38 H 1.08997 * 109.47233 * 293.80074 * 19 18 6 39 39 H 0.96699 * 116.99854 * 179.97438 * 22 20 18 40 40 H 1.08999 * 110.31079 * 239.86263 * 23 18 6 41 41 H 1.09003 * 110.30528 * 117.68949 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3736 2.0096 -0.5359 5 6 2.2668 1.7914 1.4487 6 7 3.3558 2.7882 1.2850 7 6 4.0621 3.0093 2.5539 8 6 3.1114 3.6611 3.5600 9 6 3.8805 4.0113 4.8354 10 6 2.9442 4.6538 5.8262 11 1 1.9045 4.7976 5.5717 12 6 3.4147 5.0572 7.0578 13 7 4.6807 4.8816 7.3678 14 14 2.2540 5.8530 8.2862 15 1 1.6423 4.8037 9.1407 16 1 3.0113 6.8054 9.1375 17 1 1.1857 6.5825 7.5569 18 6 4.2655 2.2273 0.2626 19 6 5.3996 1.4562 0.9410 20 6 4.8340 3.3374 -0.5833 21 8 5.9664 3.2618 -0.9976 22 8 4.0822 4.4101 -0.8764 23 6 3.4303 1.2721 -0.6101 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.3737 2.2613 1.8607 28 1 2.5908 0.9641 2.0802 29 1 4.4090 2.0541 2.9479 30 1 4.9168 3.6644 2.3846 31 1 2.6919 4.5695 3.1276 32 1 2.3056 2.9676 3.8004 33 1 4.3000 3.1028 5.2678 34 1 4.6862 4.7049 4.5949 35 1 5.0117 5.1658 8.2342 36 1 4.9793 0.7146 1.6203 37 1 6.0020 0.9548 0.1834 38 1 6.0255 2.1498 1.5024 39 1 4.4903 5.0965 -1.4217 40 1 3.8385 0.2625 -0.5633 41 1 3.4074 1.6245 -1.6413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702753809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:55 Heat of formation + Delta-G solvation = -137.127765 kcal Electronic energy + Delta-G solvation = -21796.702477 eV Core-core repulsion = 18483.596440 eV Total energy + Delta-G solvation = -3313.106037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95767 -39.14768 -37.33595 -36.06609 -34.28404 -32.40059 -31.03460 -30.08119 -26.96129 -26.27649 -25.94466 -23.95962 -22.56213 -21.47002 -19.92551 -19.42196 -17.98862 -17.13041 -16.90199 -16.18404 -15.72821 -15.34127 -15.28472 -14.49255 -14.44721 -14.30411 -13.95131 -13.73404 -13.00768 -12.79778 -12.68300 -12.36466 -12.12582 -11.94422 -11.78062 -11.65259 -11.47413 -11.36834 -11.20806 -10.85992 -10.71054 -10.65741 -10.52622 -10.34990 -9.77097 -9.66163 -9.35318 -9.06868 -8.41607 -8.33797 -5.99064 -4.01208 2.15110 3.02899 3.32447 3.38669 3.40520 3.42542 4.01530 4.32225 4.47174 4.48367 4.62423 4.93577 5.06388 5.19261 5.21803 5.29812 5.36857 5.42392 5.48094 5.54193 5.56334 5.63636 5.67071 5.76427 5.86495 5.92349 6.03195 6.24956 6.49696 6.56834 6.66272 6.81686 7.03731 7.12938 7.18965 7.68271 7.82798 7.97579 8.00909 8.43866 9.05761 9.62788 11.12379 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.004557 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.878041 B = 6142.377730 C = 7089.571938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.085 3.915 4 H 0.082 0.918 5 C 0.018 3.982 6 N -0.492 5.492 7 C 0.043 3.957 8 C -0.103 4.103 9 C 0.022 3.978 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.099 3.901 19 C -0.160 4.160 20 C 0.503 3.497 21 O -0.522 6.522 22 O -0.493 6.493 23 C -0.110 4.110 24 H 0.085 0.915 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.014 0.986 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.402 0.598 40 H 0.095 0.905 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 -8.028 -17.784 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.027 3.973 4 H 0.100 0.900 5 C -0.110 4.110 6 N -0.217 5.217 7 C -0.084 4.084 8 C -0.141 4.141 9 C -0.015 4.015 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.008 3.992 19 C -0.218 4.218 20 C 0.345 3.655 21 O -0.410 6.410 22 O -0.302 6.302 23 C -0.148 4.148 24 H 0.104 0.896 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.260 0.740 40 H 0.114 0.886 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.740 -7.979 -17.676 19.965 hybrid contribution -0.085 0.456 0.742 0.875 sum -4.824 -7.524 -16.935 19.148 Atomic orbital electron populations 1.22804 0.80712 1.02752 1.00341 1.87889 1.20013 1.27110 1.94928 1.23029 0.94016 0.84549 0.95743 0.90036 1.23699 0.96339 0.94472 0.96518 1.64891 1.08628 1.39799 1.08430 1.22625 0.97826 0.99956 0.87982 1.21635 0.97527 0.99337 0.95620 1.19070 0.95456 0.96536 0.90475 1.21229 0.95771 1.39223 0.99430 0.92690 1.25023 0.95063 0.96056 0.98326 1.69968 1.13708 1.47795 1.22078 0.86602 0.80917 0.79266 0.81264 1.20707 1.21242 1.19867 1.21527 0.94883 0.89700 0.93107 1.22305 0.97436 1.00699 1.01347 1.23178 0.82991 0.81901 0.77463 1.90704 1.19631 1.78840 1.51833 1.84670 1.48138 1.30429 1.66924 1.22440 0.93836 0.99823 0.98691 0.89637 0.93547 0.93963 0.88926 0.92113 0.93921 0.91049 0.92359 0.93460 0.96771 0.96595 0.93033 0.90622 0.90881 0.90793 0.74048 0.88616 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.88 101.05 1.10 1.35 16 2 O -0.38 -4.26 10.44 -35.23 -0.37 -4.63 16 3 C 0.09 0.95 3.51 -24.87 -0.09 0.86 16 4 H 0.08 0.85 7.88 -51.93 -0.41 0.44 16 5 C 0.02 0.23 5.37 -1.90 -0.01 0.22 16 6 N -0.49 -7.19 4.69 -216.31 -1.01 -8.21 16 7 C 0.04 0.74 3.65 -3.82 -0.01 0.72 16 8 C -0.10 -2.11 5.03 -26.73 -0.13 -2.25 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 14 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 18 C 0.10 1.30 0.84 -131.68 -0.11 1.19 16 19 C -0.16 -2.03 6.42 37.16 0.24 -1.79 16 20 C 0.50 6.97 7.00 36.01 0.25 7.22 16 21 O -0.52 -8.27 16.98 -18.75 -0.32 -8.59 16 22 O -0.49 -5.93 13.15 -39.26 -0.52 -6.44 16 23 C -0.11 -1.21 5.97 -25.37 -0.15 -1.36 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.30 8.11 -51.93 -0.42 -0.12 16 27 H 0.09 1.22 7.83 -51.93 -0.41 0.81 16 28 H 0.06 0.83 7.92 -51.93 -0.41 0.42 16 29 H 0.04 0.71 6.34 -51.93 -0.33 0.38 16 30 H 0.07 1.28 7.61 -51.93 -0.40 0.89 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.94 7.36 -51.93 -0.38 0.56 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 0.91 7.39 -51.93 -0.38 0.53 16 37 H 0.07 0.85 8.06 -51.93 -0.42 0.44 16 38 H 0.07 1.03 6.88 -51.93 -0.36 0.68 16 39 H 0.40 3.00 9.10 45.56 0.41 3.42 16 40 H 0.10 0.99 7.62 -51.93 -0.40 0.60 16 41 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -32.95 334.16 -6.88 -39.83 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.95 Total: -0.48 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 0.53 Total: -6.89 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.28 Total: -34.52 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -1.20 Total: -19.66 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.95 -6.88 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702753809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.294 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds