Wall clock time and date at job start Mon Mar 30 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99533 * 2 1 4 4 H 1.08999 * 110.64857 * 328.30356 * 3 2 1 5 5 C 1.54937 * 110.72359 * 91.45623 * 3 2 1 6 6 N 1.48538 * 103.22999 * 155.76666 * 5 3 2 7 7 C 1.46902 * 110.99982 * 200.28047 * 6 5 3 8 8 C 1.53001 * 109.46886 * 294.25757 * 7 6 5 9 9 C 1.53004 * 109.46611 * 185.27577 * 8 7 6 10 10 C 1.50701 * 109.46777 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00086 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99847 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99975 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00161 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47118 * 90.00442 * 14 12 10 16 16 H 1.48504 * 109.47249 * 210.00758 * 14 12 10 17 17 H 1.48500 * 109.46886 * 330.00353 * 14 12 10 18 18 C 1.47898 * 105.82011 * 320.79724 * 6 5 3 19 19 C 1.53002 * 109.91475 * 265.97251 * 18 6 5 20 20 C 1.50701 * 109.91895 * 144.87806 * 18 6 5 21 21 O 1.20821 * 119.99941 * 144.99423 * 20 18 6 22 22 O 1.34232 * 119.99761 * 324.99962 * 20 18 6 23 23 C 1.53994 * 107.06114 * 25.32474 * 18 6 5 24 24 H 1.08997 * 109.46838 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47034 * 300.00008 * 1 2 3 26 26 H 1.09001 * 109.47308 * 60.00085 * 1 2 3 27 27 H 1.09000 * 110.66720 * 274.20619 * 5 3 2 28 28 H 1.09007 * 110.66649 * 37.17053 * 5 3 2 29 29 H 1.08997 * 109.47309 * 54.25866 * 7 6 5 30 30 H 1.09002 * 109.46785 * 174.25809 * 7 6 5 31 31 H 1.09000 * 109.47238 * 305.27261 * 8 7 6 32 32 H 1.08992 * 109.47538 * 65.27558 * 8 7 6 33 33 H 1.09000 * 109.47061 * 299.99792 * 9 8 7 34 34 H 1.08999 * 109.47120 * 60.00179 * 9 8 7 35 35 H 0.97006 * 119.99723 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.47155 * 53.80003 * 19 18 6 37 37 H 1.09003 * 109.47020 * 173.79921 * 19 18 6 38 38 H 1.08997 * 109.47233 * 293.80074 * 19 18 6 39 39 H 0.96699 * 116.99854 * 179.97438 * 22 20 18 40 40 H 1.08999 * 110.31079 * 239.86263 * 23 18 6 41 41 H 1.09003 * 110.30528 * 117.68949 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3736 2.0096 -0.5359 5 6 2.2668 1.7914 1.4487 6 7 3.3558 2.7882 1.2850 7 6 4.0621 3.0093 2.5539 8 6 3.1114 3.6611 3.5600 9 6 3.8805 4.0113 4.8354 10 6 2.9442 4.6538 5.8262 11 1 1.9045 4.7976 5.5717 12 6 3.4147 5.0572 7.0578 13 7 4.6807 4.8816 7.3678 14 14 2.2540 5.8530 8.2862 15 1 1.6423 4.8037 9.1407 16 1 3.0113 6.8054 9.1375 17 1 1.1857 6.5825 7.5569 18 6 4.2655 2.2273 0.2626 19 6 5.3996 1.4562 0.9410 20 6 4.8340 3.3374 -0.5833 21 8 5.9664 3.2618 -0.9976 22 8 4.0822 4.4101 -0.8764 23 6 3.4303 1.2721 -0.6101 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.3737 2.2613 1.8607 28 1 2.5908 0.9641 2.0802 29 1 4.4090 2.0541 2.9479 30 1 4.9168 3.6644 2.3846 31 1 2.6919 4.5695 3.1276 32 1 2.3056 2.9676 3.8004 33 1 4.3000 3.1028 5.2678 34 1 4.6862 4.7049 4.5949 35 1 5.0117 5.1658 8.2342 36 1 4.9793 0.7146 1.6203 37 1 6.0020 0.9548 0.1834 38 1 6.0255 2.1498 1.5024 39 1 4.4903 5.0965 -1.4217 40 1 3.8385 0.2625 -0.5633 41 1 3.4074 1.6245 -1.6413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702753809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:54 Heat of formation + Delta-G solvation = -160.901777 kcal Electronic energy + Delta-G solvation = -21797.733396 eV Core-core repulsion = 18483.596440 eV Total energy + Delta-G solvation = -3314.136956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.01751 -40.17319 -38.27107 -37.11320 -36.06642 -34.19428 -32.05072 -31.60211 -28.18667 -27.45226 -27.04694 -25.29700 -24.01723 -22.73011 -21.36593 -20.55923 -19.08358 -18.46073 -18.11822 -17.72242 -16.75972 -16.50490 -16.37519 -16.26424 -15.55682 -15.46674 -15.05672 -14.83269 -14.29461 -14.10334 -13.97356 -13.74490 -13.54448 -13.22353 -12.91869 -12.88926 -12.66602 -12.52315 -12.49378 -12.36989 -12.27904 -12.21974 -11.64809 -11.57894 -11.45283 -11.35944 -11.11226 -10.58205 -10.53694 -9.59976 -8.19427 -6.30349 1.08227 1.40709 1.42097 1.53292 2.07770 2.40550 2.49255 2.99297 3.14068 3.36832 3.54035 3.63876 4.06533 4.13003 4.18656 4.27382 4.35231 4.45462 4.52579 4.58809 4.61793 4.65972 4.72753 4.76760 4.82831 4.88867 4.92162 4.93532 5.02047 5.09368 5.22364 5.49690 5.54460 5.66548 5.73367 5.85683 5.86896 6.24638 6.26214 6.86414 7.03298 7.38987 8.92552 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.004557 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.878041 B = 6142.377730 C = 7089.571938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.095 3.905 4 H 0.093 0.907 5 C 0.015 3.985 6 N -0.495 5.495 7 C 0.057 3.943 8 C -0.086 4.086 9 C 0.026 3.974 10 C -0.541 4.541 11 H 0.060 0.940 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.263 1.263 18 C 0.096 3.904 19 C -0.158 4.158 20 C 0.505 3.495 21 O -0.547 6.547 22 O -0.493 6.493 23 C -0.105 4.105 24 H 0.099 0.901 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.054 0.946 33 H -0.008 1.008 34 H -0.011 1.011 35 H 0.263 0.737 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.421 0.579 40 H 0.104 0.896 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 -8.316 -18.643 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C 0.036 3.964 4 H 0.111 0.889 5 C -0.113 4.113 6 N -0.221 5.221 7 C -0.071 4.071 8 C -0.124 4.124 9 C -0.012 4.012 10 C -0.579 4.579 11 H 0.079 0.921 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.187 1.187 18 C 0.005 3.995 19 C -0.216 4.216 20 C 0.347 3.653 21 O -0.437 6.437 22 O -0.305 6.305 23 C -0.143 4.143 24 H 0.118 0.882 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.010 0.990 34 H 0.007 0.993 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.282 0.718 40 H 0.122 0.878 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.520 -8.260 -18.561 21.337 hybrid contribution 0.457 0.551 0.978 1.212 sum -6.063 -7.709 -17.584 20.134 Atomic orbital electron populations 1.23006 0.79257 1.03993 1.01020 1.87875 1.21647 1.26878 1.94890 1.22918 0.94339 0.84971 0.94150 0.88899 1.23758 0.95533 0.93878 0.98148 1.64761 1.09058 1.41116 1.07174 1.22298 0.96609 0.99456 0.88696 1.21351 0.97529 0.99531 0.94007 1.18967 0.94918 0.94654 0.92637 1.21673 0.96390 1.39476 1.00330 0.92146 1.25980 0.96767 0.96550 1.00530 1.70104 1.15748 1.48809 1.22804 0.85451 0.78732 0.78389 0.78505 1.19676 1.20848 1.18710 1.21630 0.94947 0.90038 0.92878 1.22284 0.97342 1.00424 1.01566 1.23277 0.82631 0.82254 0.77105 1.90696 1.20592 1.79423 1.52980 1.84622 1.48107 1.30567 1.67160 1.22448 0.93324 0.99633 0.98858 0.88229 0.93586 0.92554 0.89065 0.92709 0.93642 0.92358 0.92831 0.92714 0.98975 0.99306 0.92817 0.90098 0.89768 0.92623 0.71799 0.87804 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.88 113.37 1.23 1.56 16 2 O -0.39 -7.89 10.44 -148.98 -1.56 -9.45 16 3 C 0.09 1.90 3.51 31.80 0.11 2.01 16 4 H 0.09 1.67 7.88 -2.39 -0.02 1.65 16 5 C 0.01 0.36 5.37 86.65 0.47 0.83 16 6 N -0.50 -14.04 4.69 -838.27 -3.93 -17.97 16 7 C 0.06 1.97 3.65 86.30 0.31 2.29 16 8 C -0.09 -3.56 5.03 30.60 0.15 -3.40 16 9 C 0.03 1.38 4.97 29.85 0.15 1.52 16 10 C -0.54 -30.98 9.11 25.60 0.23 -30.74 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 13 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 14 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 18 C 0.10 2.41 0.84 2.93 0.00 2.41 16 19 C -0.16 -3.94 6.42 71.98 0.46 -3.47 16 20 C 0.50 13.42 7.00 71.24 0.50 13.92 16 21 O -0.55 -16.94 16.98 21.98 0.37 -16.57 16 22 O -0.49 -11.10 13.15 -51.44 -0.68 -11.77 16 23 C -0.10 -2.07 5.97 31.48 0.19 -1.89 16 24 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.64 8.11 -2.39 -0.02 0.62 16 27 H 0.09 2.28 7.83 -2.39 -0.02 2.26 16 28 H 0.05 1.43 7.92 -2.38 -0.02 1.41 16 29 H 0.05 1.53 6.34 -2.39 -0.02 1.52 16 30 H 0.06 2.15 7.61 -2.39 -0.02 2.14 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.05 2.16 7.36 -2.39 -0.02 2.14 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 36 H 0.08 1.90 7.39 -2.39 -0.02 1.88 16 37 H 0.08 1.89 8.06 -2.39 -0.02 1.87 16 38 H 0.05 1.58 6.88 -2.39 -0.02 1.56 16 39 H 0.42 5.61 9.10 -74.06 -0.67 4.94 16 40 H 0.10 1.91 7.62 -2.39 -0.02 1.89 16 41 H 0.09 1.62 7.69 -2.39 -0.02 1.60 16 Total: -1.00 -70.35 334.16 1.14 -69.22 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.34 Total: 11.74 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.27 Total: -14.54 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -3.64 Total: -75.04 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.86 Total: -37.79 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -70.35 1.14 -69.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702753809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.686 kcal (2) G-P(sol) polarization free energy of solvation -70.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds