Wall clock time and date at job start Mon Mar 30 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99716 * 2 1 4 4 H 1.08992 * 110.87642 * 330.69986 * 3 2 1 5 5 C 1.54904 * 110.98808 * 94.54976 * 3 2 1 6 6 N 1.47889 * 104.77108 * 155.12623 * 5 3 2 7 7 C 1.46904 * 111.01561 * 213.66560 * 6 5 3 8 8 C 1.52993 * 109.47429 * 308.98011 * 7 6 5 9 9 C 1.52998 * 109.47322 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.47010 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00097 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99711 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99885 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99823 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47066 * 60.00224 * 14 12 10 16 16 H 1.48503 * 109.47307 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47472 * 300.00217 * 14 12 10 18 18 C 1.47439 * 108.59210 * 335.95842 * 6 5 3 19 19 C 1.53002 * 109.89059 * 120.35728 * 18 6 5 20 20 C 1.50701 * 110.02622 * 241.47752 * 18 6 5 21 21 O 1.20826 * 119.99963 * 131.62280 * 20 18 6 22 22 O 1.34220 * 119.99945 * 311.61778 * 20 18 6 23 23 C 1.54317 * 107.22833 * 0.95658 * 18 6 5 24 24 H 1.09002 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46755 * 299.99636 * 1 2 3 26 26 H 1.09003 * 109.47379 * 59.99747 * 1 2 3 27 27 H 1.08995 * 110.37499 * 273.98419 * 5 3 2 28 28 H 1.08995 * 110.37409 * 36.33184 * 5 3 2 29 29 H 1.09004 * 109.46643 * 68.97890 * 7 6 5 30 30 H 1.09004 * 109.47128 * 188.97551 * 7 6 5 31 31 H 1.09004 * 109.47109 * 299.99593 * 8 7 6 32 32 H 1.08997 * 109.47621 * 59.99442 * 8 7 6 33 33 H 1.08997 * 109.47384 * 299.99664 * 9 8 7 34 34 H 1.09001 * 109.47550 * 59.99866 * 9 8 7 35 35 H 0.97004 * 119.99659 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.47300 * 300.78205 * 19 18 6 37 37 H 1.09006 * 109.46750 * 60.78270 * 19 18 6 38 38 H 1.08996 * 109.46954 * 180.77747 * 19 18 6 39 39 H 0.96702 * 117.00570 * 180.02562 * 22 20 18 40 40 H 1.08996 * 110.71124 * 263.89779 * 23 18 6 41 41 H 1.09006 * 110.85640 * 140.73209 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3568 2.0215 -0.4984 5 6 2.3407 1.7657 1.4417 6 7 3.4278 2.7555 1.2817 7 6 4.3606 2.7013 2.4153 8 6 3.5758 2.7830 3.7260 9 6 4.5473 2.7260 4.9066 10 6 3.7741 2.8071 6.1977 11 1 2.6977 2.8914 6.1781 12 6 4.4412 2.7737 7.4039 13 7 5.7522 2.6716 7.4277 14 14 3.4831 2.8750 9.0042 15 1 2.5353 1.7346 9.0867 16 1 4.4259 2.8195 10.1502 17 1 2.7261 4.1518 9.0481 18 6 4.1248 2.4868 0.0106 19 6 4.0377 3.7130 -0.9003 20 6 5.5689 2.1468 0.2757 21 8 6.0661 1.1759 -0.2437 22 8 6.3026 2.9227 1.0888 23 6 3.4168 1.2876 -0.6543 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.4682 2.2303 1.9011 28 1 2.6817 0.9215 2.0408 29 1 4.9175 1.7648 2.3830 30 1 5.0551 3.5393 2.3547 31 1 3.0189 3.7195 3.7583 32 1 2.8813 1.9451 3.7866 33 1 5.1038 1.7894 4.8743 34 1 5.2420 3.5637 4.8464 35 1 6.2214 2.6477 8.2764 36 1 2.9911 3.9483 -1.0937 37 1 4.5170 4.5622 -0.4131 38 1 4.5429 3.5022 -1.8428 39 1 7.2241 2.6648 1.2282 40 1 3.9367 0.3575 -0.4251 41 1 3.3421 1.4301 -1.7324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702753811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:58 Heat of formation + Delta-G solvation = -129.817109 kcal Electronic energy + Delta-G solvation = -22043.723077 eV Core-core repulsion = 18730.934053 eV Total energy + Delta-G solvation = -3312.789024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20993 -38.93022 -37.11830 -36.28187 -34.31647 -32.50135 -30.98375 -29.97899 -26.86238 -26.40977 -25.79163 -23.75258 -22.74095 -21.59930 -19.75163 -19.62487 -18.01317 -17.24795 -16.73483 -16.21749 -15.62118 -15.26005 -15.15577 -14.71941 -14.46238 -14.33763 -13.92325 -13.53202 -13.35146 -12.64493 -12.44674 -12.33372 -12.23384 -11.90439 -11.71798 -11.61519 -11.48328 -11.33279 -11.14151 -10.86047 -10.76739 -10.56940 -10.53326 -10.21322 -9.77937 -9.60890 -9.34532 -9.05071 -8.32912 -8.30002 -5.98388 -4.00489 2.13384 2.90953 3.34355 3.38588 3.41018 3.48929 4.05061 4.29865 4.45532 4.48061 4.81466 4.98257 5.09024 5.18067 5.22449 5.27033 5.37461 5.47642 5.54047 5.60602 5.64466 5.68861 5.76900 5.83595 5.88602 5.97694 6.11123 6.35683 6.48714 6.60994 6.77496 6.90651 7.07435 7.13790 7.23426 7.68882 7.83838 7.89348 8.01677 8.44589 9.06146 9.63297 11.13016 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.004930 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.660936 B = 5678.230498 C = 6733.552887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.078 3.922 4 H 0.081 0.919 5 C 0.019 3.981 6 N -0.504 5.504 7 C 0.045 3.955 8 C -0.110 4.110 9 C 0.025 3.975 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.108 3.892 19 C -0.127 4.127 20 C 0.478 3.522 21 O -0.517 6.517 22 O -0.497 6.497 23 C -0.123 4.123 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.026 0.974 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.012 0.988 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.402 0.598 40 H 0.094 0.906 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.199 -0.200 -18.294 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.020 3.980 4 H 0.099 0.901 5 C -0.109 4.109 6 N -0.231 5.231 7 C -0.081 4.081 8 C -0.148 4.148 9 C -0.013 4.013 10 C -0.558 4.558 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.017 3.983 19 C -0.185 4.185 20 C 0.319 3.681 21 O -0.404 6.404 22 O -0.309 6.309 23 C -0.161 4.161 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.262 0.738 40 H 0.112 0.888 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.397 -0.038 -18.381 19.463 hybrid contribution 0.374 -0.780 1.187 1.468 sum -6.023 -0.818 -17.195 18.237 Atomic orbital electron populations 1.22817 0.80795 1.02836 1.00174 1.87920 1.19906 1.26841 1.94853 1.23266 0.94227 0.84853 0.95685 0.90112 1.23591 0.95750 0.94894 0.96636 1.63900 1.10930 1.47419 1.00831 1.23042 0.94018 1.01189 0.89869 1.21778 0.99101 1.00859 0.93095 1.19035 0.94134 0.97094 0.91039 1.21202 0.93332 1.50185 0.91052 0.92784 1.25017 0.94855 0.95358 0.99197 1.69954 1.06870 1.50643 1.26070 0.86663 0.79717 0.78617 0.83023 1.20303 1.21303 1.20224 1.21821 0.85517 0.97015 0.93931 1.21785 1.03645 0.95853 0.97221 1.23729 0.90039 0.79893 0.74443 1.90698 1.73181 1.27781 1.48740 1.84963 1.28725 1.55844 1.61350 1.22834 0.94508 0.98255 1.00545 0.89595 0.93603 0.94014 0.89201 0.91719 0.95568 0.87663 0.92387 0.93489 0.96956 0.96397 0.92988 0.90497 0.90755 0.92078 0.73803 0.88771 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.87 101.05 1.10 1.37 16 2 O -0.38 -4.76 10.51 -35.23 -0.37 -5.13 16 3 C 0.08 0.93 3.51 -24.59 -0.09 0.85 16 4 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 5 C 0.02 0.27 5.05 -2.28 -0.01 0.26 16 6 N -0.50 -7.47 4.93 -217.04 -1.07 -8.54 16 7 C 0.04 0.79 3.46 -3.82 -0.01 0.78 16 8 C -0.11 -2.30 4.86 -26.74 -0.13 -2.43 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 14 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.11 1.42 1.11 -131.77 -0.15 1.27 16 19 C -0.13 -1.31 8.69 37.16 0.32 -0.99 16 20 C 0.48 6.97 5.59 36.01 0.20 7.17 16 21 O -0.52 -8.66 16.35 -18.75 -0.31 -8.96 16 22 O -0.50 -6.58 9.55 -39.23 -0.37 -6.95 16 23 C -0.12 -1.53 5.44 -24.91 -0.14 -1.66 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.31 8.11 -51.93 -0.42 -0.12 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.05 7.14 -51.93 -0.37 0.68 16 29 H 0.03 0.49 6.59 -51.93 -0.34 0.15 16 30 H 0.11 1.87 6.08 -51.93 -0.32 1.56 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.97 6.57 -51.93 -0.34 0.63 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 3.83 9.10 45.56 0.41 4.24 16 40 H 0.09 1.38 7.11 -51.93 -0.37 1.02 16 41 H 0.09 0.91 7.84 -51.93 -0.41 0.50 16 LS Contribution 329.33 15.07 4.96 4.96 Total: -1.00 -33.12 329.33 -6.80 -39.92 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.91 Total: 0.75 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 0.55 Total: -6.47 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.33 Total: -34.88 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -1.05 Total: -21.05 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.12 -6.80 -39.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702753811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.900 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds