Wall clock time and date at job start Mon Mar 30 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99716 * 2 1 4 4 H 1.08992 * 110.87642 * 330.69986 * 3 2 1 5 5 C 1.54904 * 110.98808 * 94.54976 * 3 2 1 6 6 N 1.47889 * 104.77108 * 155.12623 * 5 3 2 7 7 C 1.46904 * 111.01561 * 213.66560 * 6 5 3 8 8 C 1.52993 * 109.47429 * 308.98011 * 7 6 5 9 9 C 1.52998 * 109.47322 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.47010 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00097 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99711 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99885 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99823 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47066 * 60.00224 * 14 12 10 16 16 H 1.48503 * 109.47307 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47472 * 300.00217 * 14 12 10 18 18 C 1.47439 * 108.59210 * 335.95842 * 6 5 3 19 19 C 1.53002 * 109.89059 * 120.35728 * 18 6 5 20 20 C 1.50701 * 110.02622 * 241.47752 * 18 6 5 21 21 O 1.20826 * 119.99963 * 131.62280 * 20 18 6 22 22 O 1.34220 * 119.99945 * 311.61778 * 20 18 6 23 23 C 1.54317 * 107.22833 * 0.95658 * 18 6 5 24 24 H 1.09002 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46755 * 299.99636 * 1 2 3 26 26 H 1.09003 * 109.47379 * 59.99747 * 1 2 3 27 27 H 1.08995 * 110.37499 * 273.98419 * 5 3 2 28 28 H 1.08995 * 110.37409 * 36.33184 * 5 3 2 29 29 H 1.09004 * 109.46643 * 68.97890 * 7 6 5 30 30 H 1.09004 * 109.47128 * 188.97551 * 7 6 5 31 31 H 1.09004 * 109.47109 * 299.99593 * 8 7 6 32 32 H 1.08997 * 109.47621 * 59.99442 * 8 7 6 33 33 H 1.08997 * 109.47384 * 299.99664 * 9 8 7 34 34 H 1.09001 * 109.47550 * 59.99866 * 9 8 7 35 35 H 0.97004 * 119.99659 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.47300 * 300.78205 * 19 18 6 37 37 H 1.09006 * 109.46750 * 60.78270 * 19 18 6 38 38 H 1.08996 * 109.46954 * 180.77747 * 19 18 6 39 39 H 0.96702 * 117.00570 * 180.02562 * 22 20 18 40 40 H 1.08996 * 110.71124 * 263.89779 * 23 18 6 41 41 H 1.09006 * 110.85640 * 140.73209 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3568 2.0215 -0.4984 5 6 2.3407 1.7657 1.4417 6 7 3.4278 2.7555 1.2817 7 6 4.3606 2.7013 2.4153 8 6 3.5758 2.7830 3.7260 9 6 4.5473 2.7260 4.9066 10 6 3.7741 2.8071 6.1977 11 1 2.6977 2.8914 6.1781 12 6 4.4412 2.7737 7.4039 13 7 5.7522 2.6716 7.4277 14 14 3.4831 2.8750 9.0042 15 1 2.5353 1.7346 9.0867 16 1 4.4259 2.8195 10.1502 17 1 2.7261 4.1518 9.0481 18 6 4.1248 2.4868 0.0106 19 6 4.0377 3.7130 -0.9003 20 6 5.5689 2.1468 0.2757 21 8 6.0661 1.1759 -0.2437 22 8 6.3026 2.9227 1.0888 23 6 3.4168 1.2876 -0.6543 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.4682 2.2303 1.9011 28 1 2.6817 0.9215 2.0408 29 1 4.9175 1.7648 2.3830 30 1 5.0551 3.5393 2.3547 31 1 3.0189 3.7195 3.7583 32 1 2.8813 1.9451 3.7866 33 1 5.1038 1.7894 4.8743 34 1 5.2420 3.5637 4.8464 35 1 6.2214 2.6477 8.2764 36 1 2.9911 3.9483 -1.0937 37 1 4.5170 4.5622 -0.4131 38 1 4.5429 3.5022 -1.8428 39 1 7.2241 2.6648 1.2282 40 1 3.9367 0.3575 -0.4251 41 1 3.3421 1.4301 -1.7324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702753811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:58 Heat of formation + Delta-G solvation = -154.202682 kcal Electronic energy + Delta-G solvation = -22044.780514 eV Core-core repulsion = 18730.934053 eV Total energy + Delta-G solvation = -3313.846461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.34280 -39.99666 -38.17364 -37.42719 -36.08501 -34.30147 -32.13849 -31.44222 -28.17011 -27.26101 -27.21594 -24.97334 -24.35606 -22.91255 -21.32567 -20.71834 -19.17129 -18.63973 -18.07306 -17.76369 -16.76515 -16.52726 -16.42315 -16.20761 -15.74954 -15.41817 -14.94310 -14.86448 -14.60973 -14.16308 -13.92269 -13.65607 -13.47863 -13.01372 -12.92503 -12.86476 -12.77724 -12.61610 -12.45653 -12.36022 -12.30273 -11.92781 -11.78512 -11.61703 -11.49423 -11.37411 -11.07583 -10.61869 -10.53924 -9.54581 -8.20089 -6.31253 0.97951 1.39893 1.43121 1.50981 1.88285 2.40384 2.51188 3.01866 3.13119 3.28911 3.45823 3.89323 4.04334 4.11187 4.16738 4.21876 4.25960 4.50067 4.57558 4.60856 4.68041 4.75065 4.76805 4.83215 4.89400 4.90038 4.90791 4.92844 5.17351 5.23635 5.30349 5.42214 5.50190 5.69488 5.77590 5.82646 5.84365 6.23729 6.24966 6.82858 6.84877 7.37893 8.91663 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.004930 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.660936 B = 5678.230498 C = 6733.552887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.089 3.911 4 H 0.113 0.887 5 C 0.014 3.986 6 N -0.498 5.498 7 C 0.061 3.939 8 C -0.095 4.095 9 C 0.029 3.971 10 C -0.544 4.544 11 H 0.060 0.940 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.965 3.035 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.104 3.896 19 C -0.122 4.122 20 C 0.475 3.525 21 O -0.544 6.544 22 O -0.501 6.501 23 C -0.121 4.121 24 H 0.095 0.905 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.035 0.965 29 H 0.008 0.992 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.046 0.954 33 H -0.017 1.017 34 H -0.003 1.003 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.417 0.583 40 H 0.064 0.936 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 0.642 -19.241 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.031 3.969 4 H 0.130 0.870 5 C -0.114 4.114 6 N -0.225 5.225 7 C -0.066 4.066 8 C -0.133 4.133 9 C -0.008 4.008 10 C -0.581 4.581 11 H 0.078 0.922 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.789 3.211 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.189 1.189 18 C 0.014 3.986 19 C -0.180 4.180 20 C 0.318 3.682 21 O -0.433 6.433 22 O -0.314 6.314 23 C -0.160 4.160 24 H 0.113 0.887 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.053 0.947 29 H 0.026 0.974 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.001 0.999 34 H 0.015 0.985 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.279 0.721 40 H 0.083 0.917 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.397 0.812 -19.340 21.100 hybrid contribution 1.033 -1.077 1.474 2.097 sum -7.364 -0.265 -17.866 19.326 Atomic orbital electron populations 1.23038 0.78963 1.03969 1.01320 1.87900 1.22015 1.27269 1.94853 1.23248 0.94477 0.85397 0.93821 0.86964 1.23661 0.95565 0.93825 0.98349 1.63904 1.10393 1.47632 1.00525 1.22728 0.93924 1.00242 0.89714 1.21522 0.98018 1.00942 0.92791 1.18917 0.94436 0.94545 0.92923 1.21647 0.93893 1.50302 0.92306 0.92191 1.25983 0.95863 0.94687 1.03254 1.70092 1.08668 1.51375 1.27194 0.85503 0.78318 0.79232 0.78014 1.19334 1.20812 1.18930 1.22086 0.84256 0.98886 0.93400 1.21813 1.05217 0.93908 0.97030 1.24137 0.90790 0.79373 0.73926 1.90684 1.73921 1.28807 1.49906 1.84899 1.29967 1.55633 1.60930 1.22853 0.94423 0.96484 1.02204 0.88652 0.93426 0.91805 0.88391 0.94686 0.97408 0.87659 0.91944 0.93545 0.99909 0.98493 0.92785 0.88487 0.91212 0.90318 0.72121 0.91679 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.87 113.37 1.23 1.59 16 2 O -0.40 -9.54 10.51 -148.98 -1.57 -11.10 16 3 C 0.09 1.93 3.51 31.98 0.11 2.05 16 4 H 0.11 1.76 7.86 -2.39 -0.02 1.74 16 5 C 0.01 0.39 5.05 86.76 0.44 0.83 16 6 N -0.50 -14.30 4.93 -840.59 -4.14 -18.44 16 7 C 0.06 2.18 3.46 86.30 0.30 2.48 16 8 C -0.09 -4.01 4.86 30.59 0.15 -3.86 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 13 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 14 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.10 2.59 1.11 3.13 0.00 2.59 16 19 C -0.12 -2.16 8.69 71.98 0.63 -1.53 16 20 C 0.48 13.82 5.59 71.24 0.40 14.22 16 21 O -0.54 -18.43 16.35 21.96 0.36 -18.07 16 22 O -0.50 -13.35 9.55 -51.32 -0.49 -13.84 16 23 C -0.12 -2.82 5.44 31.78 0.17 -2.65 16 24 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 0.72 8.14 -2.38 -0.02 0.71 16 26 H 0.06 0.72 8.11 -2.39 -0.02 0.71 16 27 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.03 1.17 7.14 -2.39 -0.02 1.15 16 29 H 0.01 0.31 6.59 -2.39 -0.02 0.29 16 30 H 0.11 3.78 6.08 -2.38 -0.01 3.77 16 31 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.05 1.95 6.57 -2.39 -0.02 1.93 16 33 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.42 8.12 9.10 -74.06 -0.67 7.45 16 40 H 0.06 1.92 7.11 -2.39 -0.02 1.90 16 41 H 0.12 2.03 7.84 -2.38 -0.02 2.01 16 Total: -1.00 -72.42 329.33 1.09 -71.33 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.34 Total: 13.98 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 4.27 Total: -13.32 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -3.86 Total: -75.61 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -1.70 Total: -43.02 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.42 1.09 -71.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702753811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.875 kcal (2) G-P(sol) polarization free energy of solvation -72.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds