Wall clock time and date at job start Mon Mar 30 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47011 * 110.99946 * 2 1 4 4 C 1.53106 * 109.25718 * 182.39579 * 3 2 1 5 5 O 1.43019 * 109.25653 * 303.15525 * 4 3 2 6 6 C 1.43014 * 113.73648 * 58.66974 * 5 4 3 7 7 C 1.47005 * 111.00392 * 123.64187 * 2 1 3 8 8 H 1.09004 * 109.50223 * 297.58446 * 7 2 1 9 9 C 1.52998 * 109.50676 * 57.66598 * 7 2 1 10 10 N 1.46499 * 109.47087 * 54.48199 * 9 7 2 11 11 C 1.34775 * 120.00346 * 174.97803 * 10 9 7 12 12 O 1.21448 * 119.99894 * 359.97438 * 11 10 9 13 13 C 1.48832 * 120.00176 * 179.97438 * 11 10 9 14 14 O 1.21502 * 119.99953 * 359.97438 * 13 11 10 15 15 N 1.34774 * 120.00027 * 179.97438 * 13 11 10 16 16 C 1.36120 * 120.00151 * 179.97438 * 15 13 11 17 17 H 1.07997 * 119.99700 * 0.02562 * 16 15 13 18 18 C 1.39583 * 120.00075 * 180.02562 * 16 15 13 19 19 N 1.31012 * 120.00093 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00067 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46944 * 270.00283 * 20 18 16 22 22 H 1.48497 * 109.47324 * 150.00048 * 20 18 16 23 23 H 1.48500 * 109.46952 * 29.99975 * 20 18 16 24 24 H 1.08998 * 109.46503 * 290.34235 * 1 2 3 25 25 H 1.09000 * 109.47032 * 50.33928 * 1 2 3 26 26 H 1.08995 * 109.47450 * 170.34188 * 1 2 3 27 27 H 1.08997 * 109.51019 * 302.32837 * 3 2 1 28 28 H 1.08995 * 109.50822 * 62.46287 * 3 2 1 29 29 H 1.09000 * 109.50279 * 63.08855 * 4 3 2 30 30 H 1.08995 * 109.50601 * 183.17420 * 4 3 2 31 31 H 1.09001 * 109.50022 * 181.39526 * 6 5 4 32 32 H 1.08996 * 109.50632 * 61.26520 * 6 5 4 33 33 H 1.08993 * 109.47414 * 294.47690 * 9 7 2 34 34 H 1.09009 * 109.47182 * 174.47204 * 9 7 2 35 35 H 0.96997 * 120.00015 * 354.96964 * 10 9 7 36 36 H 0.97001 * 120.00330 * 359.97438 * 15 13 11 37 37 H 0.97005 * 120.00150 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 -0.0604 5 8 4.0176 0.5572 1.0402 6 6 3.5250 -0.7850 1.0706 7 6 1.9959 -0.7603 1.1425 8 1 1.6822 -0.2848 2.0719 9 6 1.4590 -2.1921 1.0947 10 7 1.7695 -2.7869 -0.2077 11 6 1.4812 -4.0822 -0.4430 12 8 0.9643 -4.7566 0.4248 13 6 1.7961 -4.6862 -1.7663 14 8 2.3127 -4.0114 -2.6346 15 7 1.5082 -5.9817 -2.0014 16 6 1.7958 -6.5340 -3.2118 17 1 2.2550 -5.9341 -3.9836 18 6 1.4972 -7.8755 -3.4555 19 7 0.9397 -8.6031 -2.5194 20 14 1.8925 -8.6337 -5.1164 21 1 0.7302 -8.4673 -6.0256 22 1 2.1830 -10.0797 -4.9440 23 1 3.0783 -7.9566 -5.6999 24 1 -0.3632 0.3573 0.9636 25 1 -0.3633 0.6559 -0.7911 26 1 -0.3634 -1.0130 -0.1724 27 1 1.6134 1.9092 -0.8681 28 1 1.6829 1.8825 0.9110 29 1 3.8385 0.8644 -0.9966 30 1 3.9222 2.3398 -0.0038 31 1 3.9223 -1.2986 1.9462 32 1 3.8385 -1.3084 0.1674 33 1 0.3789 -2.1802 1.2405 34 1 1.9257 -2.7818 1.8838 35 1 2.1825 -2.2483 -0.9007 36 1 1.0961 -6.5206 -1.3081 37 1 0.7347 -8.2095 -1.6568 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703944344.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:11 Heat of formation + Delta-G solvation = -105.780262 kcal Electronic energy + Delta-G solvation = -21291.177515 eV Core-core repulsion = 17875.890464 eV Total energy + Delta-G solvation = -3415.287051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29052 -39.29384 -37.36897 -36.24012 -34.82230 -34.15778 -31.50431 -31.10833 -29.09415 -26.98872 -25.35578 -24.39298 -23.31461 -22.33040 -20.17877 -19.62259 -18.23964 -17.62650 -16.73914 -16.56648 -16.07205 -15.45316 -15.20880 -14.94111 -14.84614 -14.45718 -14.38385 -13.95796 -13.78487 -13.37263 -13.03105 -12.66951 -12.55623 -12.16260 -12.08720 -11.63239 -11.37418 -11.27914 -11.06804 -10.76977 -10.53171 -10.28776 -10.05071 -9.88605 -9.73189 -8.78270 -8.67516 -8.32136 -8.26749 -7.00759 -4.04278 2.38123 3.22691 3.29835 3.31436 3.47561 3.56764 3.62939 4.17216 4.25225 4.48381 4.55348 4.65604 4.88108 4.95332 4.99801 5.01102 5.16847 5.25294 5.30599 5.35101 5.49569 5.54416 5.58323 5.61461 5.74365 5.79803 5.86111 6.58178 6.66826 6.76841 6.89640 7.51720 7.80210 7.88272 8.28638 8.46503 8.72021 9.25065 9.69254 10.41372 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.003925 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.608211 B = 7131.590115 C = 7365.079407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.535 5.535 3 C 0.019 3.981 4 C 0.060 3.940 5 O -0.384 6.384 6 C 0.066 3.934 7 C 0.037 3.963 8 H 0.065 0.935 9 C 0.128 3.872 10 N -0.702 5.702 11 C 0.512 3.488 12 O -0.554 6.554 13 C 0.397 3.603 14 O -0.589 6.589 15 N -0.514 5.514 16 C -0.384 4.384 17 H 0.109 0.891 18 C -0.001 4.001 19 N -0.869 5.869 20 Si 1.098 2.902 21 H -0.281 1.281 22 H -0.278 1.278 23 H -0.279 1.279 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.417 0.583 36 H 0.388 0.612 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 17.072 6.621 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.261 5.261 3 C -0.109 4.109 4 C -0.017 4.017 5 O -0.303 6.303 6 C -0.011 4.011 7 C -0.072 4.072 8 H 0.083 0.917 9 C 0.003 3.997 10 N -0.357 5.357 11 C 0.296 3.704 12 O -0.432 6.432 13 C 0.182 3.818 14 O -0.476 6.476 15 N -0.150 5.150 16 C -0.514 4.514 17 H 0.127 0.873 18 C -0.208 4.208 19 N -0.506 5.506 20 Si 0.923 3.077 21 H -0.207 1.207 22 H -0.203 1.203 23 H -0.205 1.205 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.255 0.745 36 H 0.222 0.778 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.412 15.474 5.522 16.490 hybrid contribution -0.642 1.788 1.669 2.529 sum 0.769 17.262 7.190 18.715 Atomic orbital electron populations 1.22444 0.86404 1.03398 1.00300 1.62139 1.08719 1.13352 1.41905 1.22812 0.96596 0.89699 1.01754 1.22709 0.92116 0.96487 0.90421 1.87984 1.69910 1.23899 1.48461 1.22763 0.91044 0.83873 1.03465 1.22645 0.96897 0.94409 0.93244 0.91675 1.21282 1.00611 0.91056 0.86720 1.45561 1.63336 1.11030 1.15815 1.20675 0.78322 0.82177 0.89228 1.90678 1.43601 1.61614 1.47296 1.18871 0.90500 0.84115 0.88285 1.90594 1.49654 1.60991 1.46403 1.41596 1.49882 1.08816 1.14673 1.20778 1.41474 0.97438 0.91699 0.87320 1.26912 0.94744 0.92654 1.06484 1.70666 1.35988 1.38803 1.05135 0.83046 0.76938 0.76006 0.71739 1.20672 1.20306 1.20469 0.95420 0.91072 0.90473 0.89363 0.94006 0.91795 0.88426 0.88044 0.91447 0.91336 0.90475 0.74484 0.77758 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.02 60.07 0.54 0.77 16 2 N -0.54 -5.86 4.14 -234.58 -0.97 -6.84 16 3 C 0.02 0.18 5.65 -3.71 -0.02 0.16 16 4 C 0.06 0.56 7.01 37.21 0.26 0.82 16 5 O -0.38 -4.46 10.83 -35.23 -0.38 -4.85 16 6 C 0.07 0.74 6.20 37.21 0.23 0.97 16 7 C 0.04 0.41 2.24 -67.61 -0.15 0.25 16 8 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 9 C 0.13 1.69 4.67 -4.04 -0.02 1.67 16 10 N -0.70 -11.83 5.04 -60.93 -0.31 -12.14 16 11 C 0.51 10.96 7.87 -11.88 -0.09 10.87 16 12 O -0.55 -12.65 16.46 5.41 0.09 -12.56 16 13 C 0.40 10.04 7.82 -11.88 -0.09 9.94 16 14 O -0.59 -15.96 16.03 5.36 0.09 -15.88 16 15 N -0.51 -13.68 5.24 -11.59 -0.06 -13.74 16 16 C -0.38 -10.69 9.67 -15.15 -0.15 -10.83 16 17 H 0.11 3.13 7.15 -52.49 -0.38 2.75 16 18 C 0.00 -0.02 5.51 -17.40 -0.10 -0.12 16 19 N -0.87 -24.10 13.66 55.53 0.76 -23.34 16 20 Si 1.10 23.27 29.93 -169.99 -5.09 18.18 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 24 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 25 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 26 H 0.08 0.91 6.75 -51.93 -0.35 0.56 16 27 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.85 7.25 -51.93 -0.38 0.47 16 33 H 0.07 0.90 6.83 -51.93 -0.35 0.55 16 34 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.42 7.11 6.88 -40.82 -0.28 6.83 16 36 H 0.39 10.08 6.18 -40.82 -0.25 9.82 16 37 H 0.27 7.43 6.78 -40.82 -0.28 7.15 16 LS Contribution 309.23 15.07 4.66 4.66 Total: -1.00 -32.03 309.23 -5.66 -37.69 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -4.86 Total: 14.32 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 0.41 Total: 14.50 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.58 Total: -56.06 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.21 Total: -33.29 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.09 Total: 18.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.03 -5.66 -37.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703944344.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.092 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds