Wall clock time and date at job start Mon Mar 30 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47011 * 110.99946 * 2 1 4 4 C 1.53106 * 109.25718 * 182.39579 * 3 2 1 5 5 O 1.43019 * 109.25653 * 303.15525 * 4 3 2 6 6 C 1.43014 * 113.73648 * 58.66974 * 5 4 3 7 7 C 1.47005 * 111.00392 * 123.64187 * 2 1 3 8 8 H 1.09004 * 109.50223 * 297.58446 * 7 2 1 9 9 C 1.52998 * 109.50676 * 57.66598 * 7 2 1 10 10 N 1.46499 * 109.47087 * 54.48199 * 9 7 2 11 11 C 1.34775 * 120.00346 * 174.97803 * 10 9 7 12 12 O 1.21448 * 119.99894 * 359.97438 * 11 10 9 13 13 C 1.48832 * 120.00176 * 179.97438 * 11 10 9 14 14 O 1.21502 * 119.99953 * 359.97438 * 13 11 10 15 15 N 1.34774 * 120.00027 * 179.97438 * 13 11 10 16 16 C 1.36120 * 120.00151 * 179.97438 * 15 13 11 17 17 H 1.07997 * 119.99700 * 0.02562 * 16 15 13 18 18 C 1.39583 * 120.00075 * 180.02562 * 16 15 13 19 19 N 1.31012 * 120.00093 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00067 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46944 * 270.00283 * 20 18 16 22 22 H 1.48497 * 109.47324 * 150.00048 * 20 18 16 23 23 H 1.48500 * 109.46952 * 29.99975 * 20 18 16 24 24 H 1.08998 * 109.46503 * 290.34235 * 1 2 3 25 25 H 1.09000 * 109.47032 * 50.33928 * 1 2 3 26 26 H 1.08995 * 109.47450 * 170.34188 * 1 2 3 27 27 H 1.08997 * 109.51019 * 302.32837 * 3 2 1 28 28 H 1.08995 * 109.50822 * 62.46287 * 3 2 1 29 29 H 1.09000 * 109.50279 * 63.08855 * 4 3 2 30 30 H 1.08995 * 109.50601 * 183.17420 * 4 3 2 31 31 H 1.09001 * 109.50022 * 181.39526 * 6 5 4 32 32 H 1.08996 * 109.50632 * 61.26520 * 6 5 4 33 33 H 1.08993 * 109.47414 * 294.47690 * 9 7 2 34 34 H 1.09009 * 109.47182 * 174.47204 * 9 7 2 35 35 H 0.96997 * 120.00015 * 354.96964 * 10 9 7 36 36 H 0.97001 * 120.00330 * 359.97438 * 15 13 11 37 37 H 0.97005 * 120.00150 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 -0.0604 5 8 4.0176 0.5572 1.0402 6 6 3.5250 -0.7850 1.0706 7 6 1.9959 -0.7603 1.1425 8 1 1.6822 -0.2848 2.0719 9 6 1.4590 -2.1921 1.0947 10 7 1.7695 -2.7869 -0.2077 11 6 1.4812 -4.0822 -0.4430 12 8 0.9643 -4.7566 0.4248 13 6 1.7961 -4.6862 -1.7663 14 8 2.3127 -4.0114 -2.6346 15 7 1.5082 -5.9817 -2.0014 16 6 1.7958 -6.5340 -3.2118 17 1 2.2550 -5.9341 -3.9836 18 6 1.4972 -7.8755 -3.4555 19 7 0.9397 -8.6031 -2.5194 20 14 1.8925 -8.6337 -5.1164 21 1 0.7302 -8.4673 -6.0256 22 1 2.1830 -10.0797 -4.9440 23 1 3.0783 -7.9566 -5.6999 24 1 -0.3632 0.3573 0.9636 25 1 -0.3633 0.6559 -0.7911 26 1 -0.3634 -1.0130 -0.1724 27 1 1.6134 1.9092 -0.8681 28 1 1.6829 1.8825 0.9110 29 1 3.8385 0.8644 -0.9966 30 1 3.9222 2.3398 -0.0038 31 1 3.9223 -1.2986 1.9462 32 1 3.8385 -1.3084 0.1674 33 1 0.3789 -2.1802 1.2405 34 1 1.9257 -2.7818 1.8838 35 1 2.1825 -2.2483 -0.9007 36 1 1.0961 -6.5206 -1.3081 37 1 0.7347 -8.2095 -1.6568 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703944344.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:11 Heat of formation + Delta-G solvation = -132.389237 kcal Electronic energy + Delta-G solvation = -21292.331367 eV Core-core repulsion = 17875.890464 eV Total energy + Delta-G solvation = -3416.440903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58874 -40.71620 -39.23065 -37.28522 -36.71502 -35.54828 -33.30090 -32.46521 -29.92695 -28.30829 -27.13780 -25.21352 -24.83135 -23.49319 -21.63610 -20.87451 -20.28882 -19.43563 -17.78608 -17.66871 -17.33447 -16.75660 -16.61717 -16.50589 -16.12953 -15.70455 -15.62058 -15.45297 -14.97482 -14.86106 -14.68234 -13.91918 -13.48273 -13.39216 -13.22848 -12.95000 -12.86715 -12.52282 -12.41307 -12.10184 -12.02910 -11.88095 -11.66210 -11.58713 -10.77807 -10.34646 -10.32193 -10.20217 -9.46598 -9.14037 -6.21997 0.52755 1.54298 1.63869 1.72083 1.86893 2.34037 2.41595 2.67880 2.81542 3.10459 3.16922 3.58988 3.62165 3.83986 3.91095 4.05241 4.23205 4.25066 4.44120 4.50176 4.54150 4.57648 4.64630 4.72951 4.84431 4.94787 4.99037 5.21504 5.39673 5.72640 5.83546 5.89829 6.04702 6.09842 6.34026 6.47915 6.91898 7.18465 7.61942 8.30185 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.003925 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.608211 B = 7131.590115 C = 7365.079407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.023 3.977 4 C 0.055 3.945 5 O -0.396 6.396 6 C 0.065 3.935 7 C 0.048 3.952 8 H 0.084 0.916 9 C 0.125 3.875 10 N -0.679 5.679 11 C 0.518 3.482 12 O -0.568 6.568 13 C 0.396 3.604 14 O -0.609 6.609 15 N -0.527 5.527 16 C -0.416 4.416 17 H 0.093 0.907 18 C -0.031 4.031 19 N -0.887 5.887 20 Si 1.144 2.856 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.268 1.268 24 H 0.042 0.958 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.418 0.582 36 H 0.388 0.612 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 18.495 6.932 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.104 4.104 4 C -0.022 4.022 5 O -0.314 6.314 6 C -0.012 4.012 7 C -0.061 4.061 8 H 0.102 0.898 9 C 0.002 3.998 10 N -0.332 5.332 11 C 0.301 3.699 12 O -0.448 6.448 13 C 0.182 3.818 14 O -0.498 6.498 15 N -0.163 5.163 16 C -0.545 4.545 17 H 0.111 0.889 18 C -0.233 4.233 19 N -0.523 5.523 20 Si 0.961 3.039 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.193 1.193 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.256 0.744 36 H 0.223 0.777 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.409 16.947 5.861 17.987 hybrid contribution -0.622 1.533 1.643 2.331 sum 0.786 18.479 7.504 19.960 Atomic orbital electron populations 1.22407 0.85977 1.02427 1.01501 1.62132 1.09268 1.14700 1.42031 1.22841 0.96088 0.88692 1.02825 1.22898 0.92622 0.97298 0.89388 1.87974 1.70311 1.23895 1.49230 1.22765 0.91305 0.83988 1.03140 1.22538 0.96513 0.92853 0.94228 0.89802 1.21564 1.01264 0.92473 0.84487 1.45514 1.61172 1.09200 1.17296 1.19959 0.78931 0.83547 0.87466 1.90678 1.44705 1.62342 1.47088 1.19644 0.88914 0.83680 0.89595 1.90566 1.50057 1.61441 1.47694 1.41674 1.50630 1.09451 1.14581 1.20843 1.43292 0.98231 0.92166 0.88898 1.28399 0.93290 0.92579 1.09073 1.70766 1.37276 1.39002 1.05288 0.82537 0.77689 0.75575 0.68068 1.18996 1.19508 1.19313 0.93989 0.90088 0.92536 0.87998 0.93109 0.92838 0.86044 0.86846 0.93348 0.90729 0.89717 0.74365 0.77687 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.02 127.69 1.15 1.60 16 2 N -0.56 -10.99 4.14 -896.09 -3.71 -14.70 16 3 C 0.02 0.36 5.65 86.32 0.49 0.84 16 4 C 0.05 0.91 7.01 72.02 0.50 1.41 16 5 O -0.40 -8.42 10.83 -148.98 -1.61 -10.04 16 6 C 0.07 1.36 6.20 72.01 0.45 1.81 16 7 C 0.05 0.94 2.24 44.93 0.10 1.04 16 8 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 9 C 0.13 3.09 4.67 86.38 0.40 3.49 16 10 N -0.68 -22.33 5.04 -465.00 -2.34 -24.67 16 11 C 0.52 22.13 7.87 87.08 0.69 22.82 16 12 O -0.57 -25.80 16.46 -3.55 -0.06 -25.86 16 13 C 0.40 20.31 7.82 87.08 0.68 20.99 16 14 O -0.61 -33.46 16.03 -3.72 -0.06 -33.52 16 15 N -0.53 -28.74 5.24 -308.88 -1.62 -30.36 16 16 C -0.42 -23.65 9.67 84.35 0.82 -22.84 16 17 H 0.09 5.49 7.15 -2.91 -0.02 5.46 16 18 C -0.03 -1.68 5.51 85.14 0.47 -1.21 16 19 N -0.89 -49.63 13.66 21.76 0.30 -49.33 16 20 Si 1.14 46.32 29.93 68.60 2.05 48.37 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 23 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 24 H 0.04 0.64 8.12 -2.39 -0.02 0.62 16 25 H 0.08 1.29 8.04 -2.39 -0.02 1.27 16 26 H 0.06 1.26 6.75 -2.39 -0.02 1.24 16 27 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.18 7.25 -2.39 -0.02 1.17 16 33 H 0.07 1.82 6.83 -2.39 -0.02 1.81 16 34 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.42 13.99 6.88 -92.71 -0.64 13.35 16 36 H 0.39 20.77 6.18 -92.71 -0.57 20.20 16 37 H 0.26 14.71 6.78 -92.70 -0.63 14.08 16 Total: -1.00 -68.65 309.23 -1.28 -69.93 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: 0.04 Total: 40.22 kcal Atomic # 6 Polarization: 24.22 SS G_CDS: 5.75 Total: 29.96 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -7.38 Total: -119.06 kcal Atomic # 8 Polarization: -67.68 SS G_CDS: -1.73 Total: -69.41 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.05 Total: 48.37 kcal Total: -68.65 -1.28 -69.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703944344.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.463 kcal (2) G-P(sol) polarization free energy of solvation -68.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds