Wall clock time and date at job start Mon Mar 30 2020 04:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99804 * 2 1 4 4 H 1.48503 * 109.47510 * 270.00247 * 3 2 1 5 5 H 1.48498 * 109.47541 * 30.00754 * 3 2 1 6 6 H 1.48506 * 109.47081 * 150.00446 * 3 2 1 7 7 C 1.37871 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99956 * 160.28412 * 7 2 1 9 9 C 1.50699 * 120.00111 * 340.28387 * 7 2 1 10 10 C 1.52998 * 115.55966 * 323.61043 * 9 7 2 11 11 N 1.46905 * 109.47078 * 268.81166 * 10 9 7 12 12 C 1.46898 * 111.00308 * 180.78922 * 11 10 9 13 13 C 1.52995 * 109.47317 * 185.80910 * 12 11 10 14 14 O 1.42903 * 109.22537 * 59.16880 * 13 12 11 15 15 C 1.52587 * 109.22447 * 299.76576 * 13 12 11 16 16 C 1.53117 * 109.94558 * 168.96284 * 15 13 12 17 17 S 1.81744 * 108.80794 * 63.08921 * 16 15 13 18 18 C 1.81746 * 102.22147 * 306.71324 * 17 16 15 19 19 C 1.52583 * 109.22833 * 178.57724 * 13 12 11 20 20 C 1.53001 * 117.49954 * 177.92385 * 9 7 2 21 21 C 1.52999 * 60.03203 * 252.49733 * 20 9 7 22 22 H 0.97001 * 120.00097 * 5.04481 * 1 2 3 23 23 H 1.08997 * 109.47468 * 28.81188 * 10 9 7 24 24 H 1.08996 * 109.47201 * 148.81835 * 10 9 7 25 25 H 1.00905 * 110.99937 * 304.74932 * 11 10 9 26 26 H 1.08998 * 109.46829 * 305.80917 * 12 11 10 27 27 H 1.09002 * 109.47088 * 65.80288 * 12 11 10 28 28 H 0.96696 * 113.99642 * 299.99945 * 14 13 12 29 29 H 1.08999 * 109.39524 * 289.15564 * 15 13 12 30 30 H 1.09005 * 109.38945 * 48.86053 * 15 13 12 31 31 H 1.09005 * 109.61070 * 303.27872 * 16 15 13 32 32 H 1.08997 * 109.67857 * 182.93955 * 16 15 13 33 33 H 1.08998 * 109.57445 * 293.45864 * 18 17 16 34 34 H 1.09002 * 109.68394 * 173.13663 * 18 17 16 35 35 H 1.09004 * 109.38560 * 311.14084 * 19 13 12 36 36 H 1.08995 * 109.39278 * 70.94058 * 19 13 12 37 37 H 1.09006 * 117.49990 * 359.97438 * 20 9 7 38 38 H 1.08991 * 117.50447 * 144.99970 * 20 9 7 39 39 H 1.08998 * 117.50204 * 107.49892 * 21 20 9 40 40 H 1.09003 * 117.50213 * 252.52534 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0371 -1.2213 -0.3161 9 6 1.3173 -2.4611 0.4392 10 6 0.3215 -2.3065 1.5904 11 7 1.0135 -2.5204 2.8685 12 6 0.0825 -2.3980 3.9982 13 6 0.8614 -2.4824 5.3123 14 8 1.8303 -1.4328 5.3533 15 6 1.5756 -3.8287 5.3876 16 6 2.5715 -3.8274 6.5506 17 16 1.6548 -3.6236 8.1067 18 6 0.6758 -2.1269 7.7833 19 6 -0.1059 -2.3192 6.4811 20 6 2.1209 -3.7612 0.3699 21 6 0.9980 -3.5023 -0.6365 22 1 -0.4850 0.8368 -0.0739 23 1 -0.1036 -1.3031 1.5709 24 1 -0.4762 -3.0413 1.4818 25 1 1.4819 -3.4141 2.8810 26 1 -0.4327 -1.4392 3.9421 27 1 -0.6480 -3.2060 3.9562 28 1 2.4757 -1.4651 4.6339 29 1 0.8414 -4.6199 5.5398 30 1 2.1099 -4.0075 4.4545 31 1 3.2739 -3.0026 6.4298 32 1 3.1161 -4.7713 6.5685 33 1 1.3412 -1.2691 7.6866 34 1 -0.0199 -1.9585 8.6054 35 1 -0.7396 -1.4495 6.3076 36 1 -0.7285 -3.2101 6.5626 37 1 3.1466 -3.7002 0.0059 38 1 1.9404 -4.5063 1.1446 39 1 1.2849 -3.2708 -1.6622 40 1 0.0785 -4.0767 -0.5236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705221289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:50 Heat of formation + Delta-G solvation = -30.287675 kcal Electronic energy + Delta-G solvation = -19737.214737 eV Core-core repulsion = 16871.494505 eV Total energy + Delta-G solvation = -2865.720232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.17613 -36.98511 -33.72445 -33.35242 -32.20064 -31.61461 -28.35535 -25.77749 -24.48933 -23.46701 -22.28854 -21.06172 -20.06130 -18.98225 -17.06901 -16.75096 -15.90680 -15.22832 -15.07584 -14.64353 -14.48250 -13.92431 -13.88387 -13.66887 -13.18642 -13.04254 -12.88109 -12.58005 -12.06751 -11.68235 -11.65373 -11.43425 -11.26317 -11.14059 -10.93483 -10.58231 -10.50975 -10.36867 -10.23068 -9.77456 -9.68184 -9.21246 -9.16215 -8.74898 -8.05320 -7.71837 -7.63107 -6.10115 -4.04472 1.80320 2.52438 3.27894 3.36953 3.42791 4.30930 4.38254 4.51607 4.65546 4.85494 4.91892 4.95186 5.08684 5.19626 5.31720 5.47695 5.53896 5.60902 5.63996 5.76616 5.85432 5.90459 6.00921 6.07193 6.19711 6.26904 6.34248 6.50849 6.60878 6.69328 6.87912 7.01352 7.29004 7.61354 7.84757 7.94914 7.99632 8.12621 8.46325 8.87765 9.51409 10.94283 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.005171 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.896475 B = 5413.609682 C = 5968.050960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.481 4.481 8 H 0.059 0.941 9 C 0.065 3.935 10 C 0.092 3.908 11 N -0.678 5.678 12 C 0.037 3.963 13 C 0.136 3.864 14 O -0.556 6.556 15 C -0.151 4.151 16 C -0.068 4.068 17 S -0.285 6.285 18 C -0.069 4.069 19 C -0.107 4.107 20 C -0.210 4.210 21 C -0.207 4.207 22 H 0.262 0.738 23 H 0.121 0.879 24 H -0.005 1.005 25 H 0.323 0.677 26 H 0.079 0.921 27 H 0.025 0.975 28 H 0.390 0.610 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 -6.053 12.314 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.518 4.518 8 H 0.077 0.923 9 C 0.064 3.936 10 C -0.035 4.035 11 N -0.309 5.309 12 C -0.094 4.094 13 C 0.094 3.906 14 O -0.364 6.364 15 C -0.190 4.190 16 C -0.217 4.217 17 S -0.060 6.060 18 C -0.217 4.217 19 C -0.146 4.146 20 C -0.247 4.247 21 C -0.245 4.245 22 H 0.072 0.928 23 H 0.138 0.862 24 H 0.013 0.987 25 H 0.142 0.858 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.240 0.760 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.045 -5.716 13.881 15.012 hybrid contribution 0.155 0.412 -1.855 1.907 sum 0.200 -5.304 12.025 13.145 Atomic orbital electron populations 1.69890 1.06233 1.26937 1.48291 1.24900 0.94601 0.99064 0.94181 0.86644 0.80435 0.83296 0.77955 1.20945 1.21102 1.19603 1.20421 0.97338 0.90224 1.43818 0.92262 1.18923 0.94432 0.87921 0.92290 1.21788 0.92967 1.03290 0.85501 1.60477 1.30477 1.37142 1.02837 1.22542 0.94422 1.01430 0.90978 1.20999 0.88961 0.86441 0.94208 1.86351 1.44789 1.50809 1.54410 1.22440 0.99081 0.98832 0.98651 1.23300 0.99551 1.05620 0.93183 1.86645 1.55659 1.38066 1.25593 1.23274 1.00642 0.97564 1.00199 1.21687 0.97181 1.03414 0.92351 1.22778 0.96057 1.03293 1.02607 1.23048 0.97202 1.07832 0.96444 0.92811 0.86161 0.98711 0.85837 0.90265 0.95649 0.76009 0.90413 0.89789 0.88988 0.88325 0.88634 0.88402 0.90093 0.89971 0.90657 0.92041 0.90423 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.87 11.15 55.43 0.62 -23.25 16 2 C 0.08 2.00 4.99 -17.82 -0.09 1.91 16 3 Si 0.89 20.76 29.58 -169.99 -5.03 15.73 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.48 -12.78 8.99 -34.44 -0.31 -13.09 16 8 H 0.06 1.59 7.89 -52.48 -0.41 1.17 16 9 C 0.07 1.55 2.01 -155.62 -0.31 1.24 16 10 C 0.09 2.05 5.47 -3.82 -0.02 2.03 16 11 N -0.68 -12.30 5.76 -113.78 -0.66 -12.96 16 12 C 0.04 0.57 4.82 -3.83 -0.02 0.55 16 13 C 0.14 1.79 0.76 -91.05 -0.07 1.72 16 14 O -0.56 -8.20 10.67 -35.23 -0.38 -8.57 16 15 C -0.15 -1.77 4.73 -26.88 -0.13 -1.90 16 16 C -0.07 -0.78 6.26 37.22 0.23 -0.54 16 17 S -0.29 -3.47 22.33 -107.50 -2.40 -5.87 16 18 C -0.07 -0.79 6.26 37.21 0.23 -0.55 16 19 C -0.11 -1.26 4.86 -26.89 -0.13 -1.39 16 20 C -0.21 -4.35 9.42 -26.73 -0.25 -4.61 16 21 C -0.21 -4.64 9.89 -26.69 -0.26 -4.90 16 22 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 23 H 0.12 3.07 5.35 -51.93 -0.28 2.79 16 24 H -0.01 -0.12 7.87 -51.93 -0.41 -0.53 16 25 H 0.32 5.42 5.46 -39.29 -0.21 5.20 16 26 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.39 5.75 8.43 45.56 0.38 6.13 16 29 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 30 H 0.08 1.01 6.16 -51.93 -0.32 0.69 16 31 H 0.09 1.09 7.35 -51.92 -0.38 0.71 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.20 7.35 -51.93 -0.38 0.82 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 36 H 0.08 0.89 8.05 -51.93 -0.42 0.48 16 37 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.06 1.14 7.35 -51.93 -0.38 0.75 16 39 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -27.00 321.88 -9.86 -36.86 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.74 Total: 12.74 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.13 Total: -19.53 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.04 Total: -36.20 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.38 Total: -8.57 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.40 Total: -5.87 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.00 -9.86 -36.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705221289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.574 kcal (2) G-P(sol) polarization free energy of solvation -27.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds