Wall clock time and date at job start Mon Mar 30 2020 04:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99804 * 2 1 4 4 H 1.48503 * 109.47510 * 270.00247 * 3 2 1 5 5 H 1.48498 * 109.47541 * 30.00754 * 3 2 1 6 6 H 1.48506 * 109.47081 * 150.00446 * 3 2 1 7 7 C 1.37871 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99956 * 160.28412 * 7 2 1 9 9 C 1.50699 * 120.00111 * 340.28387 * 7 2 1 10 10 C 1.52998 * 115.55966 * 323.61043 * 9 7 2 11 11 N 1.46905 * 109.47078 * 268.81166 * 10 9 7 12 12 C 1.46898 * 111.00308 * 180.78922 * 11 10 9 13 13 C 1.52995 * 109.47317 * 185.80910 * 12 11 10 14 14 O 1.42903 * 109.22537 * 59.16880 * 13 12 11 15 15 C 1.52587 * 109.22447 * 299.76576 * 13 12 11 16 16 C 1.53117 * 109.94558 * 168.96284 * 15 13 12 17 17 S 1.81744 * 108.80794 * 63.08921 * 16 15 13 18 18 C 1.81746 * 102.22147 * 306.71324 * 17 16 15 19 19 C 1.52583 * 109.22833 * 178.57724 * 13 12 11 20 20 C 1.53001 * 117.49954 * 177.92385 * 9 7 2 21 21 C 1.52999 * 60.03203 * 252.49733 * 20 9 7 22 22 H 0.97001 * 120.00097 * 5.04481 * 1 2 3 23 23 H 1.08997 * 109.47468 * 28.81188 * 10 9 7 24 24 H 1.08996 * 109.47201 * 148.81835 * 10 9 7 25 25 H 1.00905 * 110.99937 * 304.74932 * 11 10 9 26 26 H 1.08998 * 109.46829 * 305.80917 * 12 11 10 27 27 H 1.09002 * 109.47088 * 65.80288 * 12 11 10 28 28 H 0.96696 * 113.99642 * 299.99945 * 14 13 12 29 29 H 1.08999 * 109.39524 * 289.15564 * 15 13 12 30 30 H 1.09005 * 109.38945 * 48.86053 * 15 13 12 31 31 H 1.09005 * 109.61070 * 303.27872 * 16 15 13 32 32 H 1.08997 * 109.67857 * 182.93955 * 16 15 13 33 33 H 1.08998 * 109.57445 * 293.45864 * 18 17 16 34 34 H 1.09002 * 109.68394 * 173.13663 * 18 17 16 35 35 H 1.09004 * 109.38560 * 311.14084 * 19 13 12 36 36 H 1.08995 * 109.39278 * 70.94058 * 19 13 12 37 37 H 1.09006 * 117.49990 * 359.97438 * 20 9 7 38 38 H 1.08991 * 117.50447 * 144.99970 * 20 9 7 39 39 H 1.08998 * 117.50204 * 107.49892 * 21 20 9 40 40 H 1.09003 * 117.50213 * 252.52534 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0371 -1.2213 -0.3161 9 6 1.3173 -2.4611 0.4392 10 6 0.3215 -2.3065 1.5904 11 7 1.0135 -2.5204 2.8685 12 6 0.0825 -2.3980 3.9982 13 6 0.8614 -2.4824 5.3123 14 8 1.8303 -1.4328 5.3533 15 6 1.5756 -3.8287 5.3876 16 6 2.5715 -3.8274 6.5506 17 16 1.6548 -3.6236 8.1067 18 6 0.6758 -2.1269 7.7833 19 6 -0.1059 -2.3192 6.4811 20 6 2.1209 -3.7612 0.3699 21 6 0.9980 -3.5023 -0.6365 22 1 -0.4850 0.8368 -0.0739 23 1 -0.1036 -1.3031 1.5709 24 1 -0.4762 -3.0413 1.4818 25 1 1.4819 -3.4141 2.8810 26 1 -0.4327 -1.4392 3.9421 27 1 -0.6480 -3.2060 3.9562 28 1 2.4757 -1.4651 4.6339 29 1 0.8414 -4.6199 5.5398 30 1 2.1099 -4.0075 4.4545 31 1 3.2739 -3.0026 6.4298 32 1 3.1161 -4.7713 6.5685 33 1 1.3412 -1.2691 7.6866 34 1 -0.0199 -1.9585 8.6054 35 1 -0.7396 -1.4495 6.3076 36 1 -0.7285 -3.2101 6.5626 37 1 3.1466 -3.7002 0.0059 38 1 1.9404 -4.5063 1.1446 39 1 1.2849 -3.2708 -1.6622 40 1 0.0785 -4.0767 -0.5236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705221289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:49 Heat of formation + Delta-G solvation = -46.753988 kcal Electronic energy + Delta-G solvation = -19737.928770 eV Core-core repulsion = 16871.494505 eV Total energy + Delta-G solvation = -2866.434265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32449 -38.67820 -35.18432 -34.42927 -34.19229 -32.54026 -29.62202 -27.69224 -25.99924 -24.49268 -23.57030 -22.73415 -21.13989 -20.82307 -18.44787 -18.01883 -17.19861 -16.79350 -16.49377 -16.12943 -15.76579 -15.27459 -15.10262 -14.92100 -14.75185 -14.22754 -14.02969 -13.66900 -13.54755 -13.09603 -12.99785 -12.83059 -12.68775 -12.62006 -12.41391 -12.31482 -12.12424 -12.05798 -11.54360 -11.07949 -10.99117 -10.80626 -10.61640 -10.53914 -9.95459 -9.14414 -8.65092 -8.10561 -6.09719 0.89532 1.40627 1.46607 1.55619 1.61200 2.44058 2.98594 3.16349 3.36302 3.67850 3.71747 3.80213 3.93503 4.01515 4.28522 4.33294 4.37068 4.45928 4.51319 4.56853 4.66731 4.73850 4.76689 4.82216 4.92295 4.92881 4.94821 5.00127 5.11892 5.13618 5.25151 5.29445 5.55380 5.65630 6.08165 6.27926 6.42028 6.72020 6.85400 6.87016 7.47823 8.92675 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.005171 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.896475 B = 5413.609682 C = 5968.050960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.036 3.964 3 Si 0.943 3.057 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.499 4.499 8 H 0.048 0.952 9 C 0.033 3.967 10 C 0.106 3.894 11 N -0.677 5.677 12 C 0.040 3.960 13 C 0.140 3.860 14 O -0.565 6.565 15 C -0.144 4.144 16 C -0.063 4.063 17 S -0.300 6.300 18 C -0.063 4.063 19 C -0.106 4.106 20 C -0.181 4.181 21 C -0.212 4.212 22 H 0.261 0.739 23 H 0.087 0.913 24 H -0.007 1.007 25 H 0.334 0.666 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.388 0.612 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -7.088 13.421 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.032 3.968 10 C -0.023 4.023 11 N -0.309 5.309 12 C -0.090 4.090 13 C 0.098 3.902 14 O -0.373 6.373 15 C -0.183 4.183 16 C -0.211 4.211 17 S -0.074 6.074 18 C -0.211 4.211 19 C -0.146 4.146 20 C -0.218 4.218 21 C -0.251 4.251 22 H 0.070 0.930 23 H 0.105 0.895 24 H 0.011 0.989 25 H 0.154 0.846 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.238 0.762 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.101 0.899 34 H 0.133 0.867 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.520 -6.763 14.994 16.457 hybrid contribution 0.005 0.708 -2.209 2.319 sum 0.525 -6.056 12.785 14.157 Atomic orbital electron populations 1.69997 1.07195 1.27333 1.49193 1.25476 0.95224 1.01576 0.94195 0.85799 0.79259 0.80120 0.77881 1.20589 1.21171 1.19447 1.20669 0.97025 0.91905 1.44021 0.93331 1.19029 0.96149 0.88123 0.93490 1.21404 0.92689 1.01234 0.86960 1.60321 1.30775 1.37986 1.01865 1.22540 0.94538 1.00574 0.91309 1.21044 0.88784 0.87042 0.93288 1.86360 1.44993 1.51679 1.54289 1.22362 0.99223 0.97862 0.98856 1.23299 0.99223 1.06239 0.92369 1.86718 1.55995 1.38290 1.26416 1.23245 1.00547 0.96670 1.00595 1.21710 0.96944 1.04049 0.91865 1.22781 0.95419 1.01628 1.01970 1.23021 0.98603 1.07625 0.95845 0.92951 0.89525 0.98935 0.84563 0.92578 0.94481 0.76218 0.89509 0.89782 0.89613 0.86741 0.89942 0.86661 0.90235 0.88627 0.90547 0.89139 0.91695 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.73 11.15 21.45 0.24 -49.49 16 2 C 0.04 1.91 4.99 84.65 0.42 2.33 16 3 Si 0.94 42.93 29.58 68.60 2.03 44.96 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.50 -26.62 8.99 25.60 0.23 -26.39 16 8 H 0.05 2.62 7.89 -2.91 -0.02 2.59 16 9 C 0.03 1.55 2.01 -52.90 -0.11 1.44 16 10 C 0.11 4.69 5.47 86.30 0.47 5.16 16 11 N -0.68 -23.86 5.76 -513.90 -2.96 -26.82 16 12 C 0.04 1.22 4.82 86.30 0.42 1.64 16 13 C 0.14 3.46 0.76 -11.07 -0.01 3.46 16 14 O -0.57 -16.16 10.67 -148.98 -1.59 -17.75 16 15 C -0.14 -3.03 4.73 30.50 0.14 -2.88 16 16 C -0.06 -1.29 6.26 72.02 0.45 -0.84 16 17 S -0.30 -6.67 22.33 -56.49 -1.26 -7.93 16 18 C -0.06 -1.32 6.26 72.01 0.45 -0.87 16 19 C -0.11 -2.31 4.86 30.49 0.15 -2.16 16 20 C -0.18 -7.12 9.42 30.59 0.29 -6.84 16 21 C -0.21 -9.34 9.89 30.62 0.30 -9.04 16 22 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 23 H 0.09 4.50 5.35 -2.39 -0.01 4.49 16 24 H -0.01 -0.32 7.87 -2.39 -0.02 -0.34 16 25 H 0.33 10.48 5.46 -89.69 -0.49 10.00 16 26 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.39 11.17 8.43 -74.06 -0.62 10.54 16 29 H 0.09 1.71 8.05 -2.39 -0.02 1.69 16 30 H 0.08 1.79 6.16 -2.38 -0.01 1.78 16 31 H 0.09 1.88 7.35 -2.38 -0.02 1.86 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 1.97 7.35 -2.39 -0.02 1.95 16 34 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 1.76 8.09 -2.38 -0.02 1.74 16 36 H 0.10 1.83 8.05 -2.39 -0.02 1.82 16 37 H 0.08 3.00 8.14 -2.38 -0.02 2.98 16 38 H 0.09 3.03 7.35 -2.39 -0.02 3.01 16 39 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.07 2.95 8.03 -2.39 -0.02 2.93 16 Total: -1.00 -57.04 321.88 -0.41 -57.45 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -0.08 Total: 34.57 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 3.21 Total: -34.99 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -2.72 Total: -76.31 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -1.59 Total: -17.75 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -1.26 Total: -7.93 kcal Total: -57.04 -0.41 -57.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705221289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.695 kcal (2) G-P(sol) polarization free energy of solvation -57.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds