Wall clock time and date at job start Mon Mar 30 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 116.99812 * 2 1 4 4 O 1.20822 * 119.99830 * 359.71863 * 3 2 1 5 5 C 1.50705 * 119.99570 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.87510 * 204.66574 * 5 3 2 7 7 C 1.53008 * 109.47302 * 52.27679 * 6 5 3 8 8 C 1.50706 * 115.54742 * 53.32415 * 7 6 5 9 9 H 1.07991 * 120.00221 * 275.52266 * 8 7 6 10 10 C 1.37881 * 119.99512 * 95.52007 * 8 7 6 11 11 N 1.31516 * 119.99595 * 174.41504 * 10 8 7 12 12 Si 1.86797 * 120.00320 * 354.41843 * 10 8 7 13 13 H 1.48503 * 109.47043 * 94.75447 * 12 10 8 14 14 H 1.48500 * 109.47164 * 214.75427 * 12 10 8 15 15 H 1.48501 * 109.47092 * 334.75713 * 12 10 8 16 16 C 1.52994 * 117.49965 * 267.65853 * 7 6 5 17 17 C 1.52988 * 117.50036 * 198.99756 * 7 6 5 18 18 C 1.54318 * 109.89135 * 83.46886 * 5 3 2 19 19 C 1.55135 * 103.01694 * 218.30870 * 18 5 3 20 20 H 1.09003 * 111.02028 * 153.75735 * 19 18 5 21 21 F 1.39898 * 110.98876 * 277.55807 * 19 18 5 22 22 C 1.54907 * 101.65715 * 35.65283 * 19 18 5 23 23 N 1.47444 * 109.88761 * 325.69526 * 5 3 2 24 24 H 1.09000 * 109.47387 * 300.00334 * 1 2 3 25 25 H 1.09005 * 109.46944 * 59.99935 * 1 2 3 26 26 H 1.08995 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47242 * 172.27652 * 6 5 3 28 28 H 1.08999 * 109.47349 * 292.27975 * 6 5 3 29 29 H 0.96998 * 119.99974 * 180.02562 * 11 10 8 30 30 H 1.08998 * 117.49824 * 359.97438 * 16 7 6 31 31 H 1.08997 * 117.49885 * 145.01661 * 16 7 6 32 32 H 1.09006 * 117.50144 * 214.98202 * 17 7 6 33 33 H 1.08998 * 117.50252 * 359.97438 * 17 7 6 34 34 H 1.09004 * 110.70347 * 336.69407 * 18 5 3 35 35 H 1.08997 * 110.70290 * 99.92257 * 18 5 3 36 36 H 1.08999 * 110.37593 * 204.10088 * 22 19 18 37 37 H 1.09002 * 110.37190 * 81.75818 * 22 19 18 38 38 H 1.00899 * 111.00018 * 240.68222 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0051 5 6 3.5663 1.2749 -0.0006 6 6 4.0177 2.6078 0.6000 7 6 3.3503 2.8053 1.9626 8 6 3.5263 1.6739 2.9426 9 1 2.8615 0.8235 2.9106 10 6 4.5361 1.7247 3.8800 11 7 4.6229 0.7930 4.8041 12 14 5.7810 3.1168 3.8374 13 1 5.3466 4.1976 4.7586 14 1 7.1088 2.6067 4.2639 15 1 5.8770 3.6529 2.4558 16 6 2.0251 3.5692 1.9961 17 6 3.3017 4.2268 2.5260 18 6 4.0987 1.1378 -1.4425 19 6 5.3795 0.2812 -1.2622 20 1 5.6083 -0.2761 -2.1706 21 9 6.4646 1.0768 -0.8788 22 6 4.9591 -0.6731 -0.1167 23 7 4.1274 0.1572 0.7804 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 5.1007 2.6026 0.7232 28 1 3.7316 3.4218 -0.0660 29 1 5.3331 0.8289 5.4638 30 1 1.6289 3.9314 1.0476 31 1 1.2808 3.2538 2.7272 32 1 3.3967 4.3439 3.6056 33 1 3.7456 5.0214 1.9263 34 1 3.3750 0.6211 -2.0730 35 1 4.3441 2.1155 -1.8573 36 1 5.8380 -1.0407 0.4129 37 1 4.3767 -1.5059 -0.5111 38 1 4.6674 0.4973 1.5619 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707467507.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:30 Heat of formation + Delta-G solvation = -93.426807 kcal Electronic energy + Delta-G solvation = -23101.925776 eV Core-core repulsion = 19667.254449 eV Total energy + Delta-G solvation = -3434.671327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.43784 -40.24127 -37.92222 -36.35132 -35.54435 -32.09751 -30.49929 -29.56527 -27.47269 -25.85914 -25.01017 -22.66844 -21.56509 -21.04490 -19.57806 -18.62653 -17.11968 -16.72329 -16.25082 -15.98247 -15.58323 -15.08072 -14.80327 -14.62909 -14.06268 -13.84214 -13.16599 -12.91223 -12.86233 -12.64807 -12.43919 -12.10059 -11.78689 -11.62796 -11.39820 -11.14053 -10.99423 -10.87440 -10.71979 -10.61385 -10.27948 -10.13083 -9.97656 -9.71005 -9.33092 -8.78009 -8.50320 -8.28839 -7.83802 -6.08900 -4.08677 2.89975 3.30600 3.36595 3.41431 3.48338 4.43760 4.45606 4.51538 4.71709 4.88082 4.97616 5.13978 5.25206 5.39430 5.48215 5.48783 5.58953 5.69520 5.78002 5.88328 5.92117 6.01490 6.06606 6.23973 6.28846 6.37899 6.46090 6.64927 6.73292 6.90941 7.12698 7.18804 7.34090 7.42668 7.81110 8.21039 8.54972 8.57908 9.02363 9.53345 11.01194 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.010592 C = 0.008329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.764593 B = 2642.794978 C = 3360.965019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.341 6.341 3 C 0.493 3.507 4 O -0.505 6.505 5 C 0.139 3.861 6 C -0.084 4.084 7 C -0.007 4.007 8 C -0.479 4.479 9 H 0.089 0.911 10 C 0.077 3.923 11 N -0.890 5.890 12 Si 0.874 3.126 13 H -0.282 1.282 14 H -0.297 1.297 15 H -0.258 1.258 16 C -0.160 4.160 17 C -0.211 4.211 18 C -0.154 4.154 19 C 0.054 3.946 20 H 0.095 0.905 21 F -0.206 7.206 22 C 0.022 3.978 23 N -0.645 5.645 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.264 0.736 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 -1.866 -12.663 12.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.257 6.257 3 C 0.335 3.665 4 O -0.391 6.391 5 C 0.045 3.955 6 C -0.123 4.123 7 C -0.008 4.008 8 C -0.516 4.516 9 H 0.107 0.893 10 C -0.126 4.126 11 N -0.527 5.527 12 Si 0.702 3.298 13 H -0.208 1.208 14 H -0.224 1.224 15 H -0.182 1.182 16 C -0.197 4.197 17 C -0.248 4.248 18 C -0.193 4.193 19 C 0.017 3.983 20 H 0.113 0.887 21 F -0.187 7.187 22 C -0.108 4.108 23 N -0.285 5.285 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.005 -2.032 -12.455 12.778 hybrid contribution 1.310 1.475 0.132 1.977 sum -0.696 -0.557 -12.323 12.355 Atomic orbital electron populations 1.23119 0.78402 1.02674 1.01780 1.86603 1.21439 1.33758 1.83855 1.23504 0.91131 0.80843 0.71014 1.90575 1.66904 1.36238 1.45425 1.21082 0.87802 0.94188 0.92406 1.21656 1.00273 0.93102 0.97246 1.19420 0.96840 0.91163 0.93369 1.20364 1.15524 1.03535 1.12222 0.89276 1.25006 0.97422 0.95519 0.94632 1.69918 1.32833 1.34221 1.15685 0.86946 0.80486 0.82898 0.79455 1.20789 1.22388 1.18245 1.22951 0.91002 1.04880 1.00899 1.22974 1.04671 0.97297 0.99843 1.23483 0.97106 1.01919 0.96826 1.23218 0.83505 0.91623 0.99991 0.88702 1.92820 1.56705 1.76137 1.93008 1.23597 0.97400 0.96844 0.92987 1.61940 1.38606 1.18930 1.09057 0.92147 0.92998 0.89009 0.90910 0.92581 0.92651 0.89232 0.90598 0.89910 0.91322 0.89178 0.89182 0.90390 0.89183 0.78607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 101.05 1.07 1.56 16 2 O -0.34 -6.20 10.28 -39.27 -0.40 -6.61 16 3 C 0.49 9.64 5.94 36.01 0.21 9.85 16 4 O -0.50 -10.47 12.04 -18.75 -0.23 -10.70 16 5 C 0.14 2.59 0.79 -131.76 -0.10 2.48 16 6 C -0.08 -1.74 3.75 -26.73 -0.10 -1.84 16 7 C -0.01 -0.16 0.33 -155.66 -0.05 -0.22 16 8 C -0.48 -12.65 6.16 -34.44 -0.21 -12.86 16 9 H 0.09 2.64 7.88 -52.49 -0.41 2.22 16 10 C 0.08 2.11 5.25 -17.82 -0.09 2.02 16 11 N -0.89 -25.88 13.96 55.43 0.77 -25.10 16 12 Si 0.87 21.43 24.71 -169.99 -4.20 17.23 16 13 H -0.28 -6.96 7.06 56.52 0.40 -6.56 16 14 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 15 H -0.26 -6.09 5.84 56.52 0.33 -5.76 16 16 C -0.16 -3.59 7.94 -26.70 -0.21 -3.80 16 17 C -0.21 -4.75 7.33 -26.70 -0.20 -4.95 16 18 C -0.15 -2.24 5.82 -24.91 -0.14 -2.39 16 19 C 0.05 0.74 4.85 -24.60 -0.12 0.63 16 20 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 21 F -0.21 -3.38 16.94 2.25 0.04 -3.34 16 22 C 0.02 0.33 7.38 -2.30 -0.02 0.32 16 23 N -0.65 -12.68 5.81 -98.29 -0.57 -13.25 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.55 6.87 -51.93 -0.36 1.20 16 28 H 0.06 1.09 7.96 -51.93 -0.41 0.68 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 30 H 0.09 1.94 6.43 -51.93 -0.33 1.61 16 31 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.08 1.96 6.58 -51.93 -0.34 1.62 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.09 1.14 7.84 -51.93 -0.41 0.73 16 35 H 0.09 1.24 7.77 -51.93 -0.40 0.83 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.38 8.70 5.65 -39.29 -0.22 8.47 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -30.08 300.26 -5.52 -35.60 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.48 Total: 10.83 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 0.03 Total: -9.19 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.20 Total: -38.35 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.63 Total: -17.31 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.04 Total: -3.34 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.20 Total: 17.23 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.08 -5.52 -35.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707467507.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.825 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds