Wall clock time and date at job start Mon Mar 30 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00324 * 2 1 4 4 O 1.20823 * 119.99874 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00244 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.90979 * 205.40304 * 5 3 2 7 7 C 1.52999 * 109.46848 * 64.71846 * 6 5 3 8 8 C 1.50703 * 115.55108 * 273.79338 * 7 6 5 9 9 H 1.07997 * 119.99943 * 357.42928 * 8 7 6 10 10 C 1.37877 * 119.99625 * 177.42418 * 8 7 6 11 11 N 1.31507 * 120.00334 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99736 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47308 * 59.99982 * 12 10 8 14 14 H 1.48497 * 109.47539 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47335 * 300.00626 * 12 10 8 16 16 C 1.53003 * 117.49306 * 128.08945 * 7 6 5 17 17 C 1.53001 * 60.00023 * 252.50751 * 16 7 6 18 18 C 1.53995 * 109.91597 * 84.29917 * 5 3 2 19 19 C 1.54597 * 105.14288 * 239.42324 * 18 5 3 20 20 H 1.09000 * 110.72723 * 219.68731 * 19 18 5 21 21 F 1.39905 * 110.72314 * 96.39931 * 19 18 5 22 22 C 1.54943 * 102.91963 * 338.04650 * 19 18 5 23 23 N 1.47900 * 109.91468 * 326.71348 * 5 3 2 24 24 H 1.09001 * 109.47677 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46718 * 299.99794 * 1 2 3 26 26 H 1.08998 * 109.47699 * 59.99327 * 1 2 3 27 27 H 1.09000 * 109.47178 * 184.72235 * 6 5 3 28 28 H 1.09006 * 109.46653 * 304.71894 * 6 5 3 29 29 H 0.96996 * 120.00022 * 179.97438 * 11 10 8 30 30 H 1.08996 * 117.50543 * 359.97438 * 16 7 6 31 31 H 1.09000 * 117.49805 * 145.02090 * 16 7 6 32 32 H 1.08996 * 117.50158 * 252.51614 * 17 16 7 33 33 H 1.09006 * 117.49664 * 107.48640 * 17 16 7 34 34 H 1.08999 * 110.31248 * 358.34005 * 18 5 3 35 35 H 1.09005 * 110.31019 * 120.50858 * 18 5 3 36 36 H 1.09005 * 110.66461 * 278.97582 * 22 19 18 37 37 H 1.09000 * 110.66822 * 155.84970 * 22 19 18 38 38 H 1.00894 * 111.00519 * 24.16771 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0189 2.5996 0.6166 7 6 3.6112 2.6410 2.0907 8 6 2.2165 3.1417 2.3655 9 1 1.5941 3.4806 1.5506 10 6 1.7353 3.1669 3.6573 11 7 2.4934 2.7546 4.6497 12 14 0.0064 3.7867 3.9979 13 1 -0.9743 2.9453 3.2661 14 1 -0.2678 3.7130 5.4555 15 1 -0.1132 5.1953 3.5429 16 6 4.6973 2.9764 3.1148 17 6 4.1625 1.5470 3.0072 18 6 4.0971 1.1589 -1.4415 19 6 5.0148 -0.0853 -1.4350 20 1 5.9060 0.0895 -2.0378 21 9 4.3224 -1.2135 -1.8880 22 6 5.3859 -0.2342 0.0619 23 7 4.1305 0.1401 0.7621 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 5.1025 2.6863 0.5367 28 1 3.5481 3.4272 0.0859 29 1 2.1549 2.7727 5.5585 30 1 5.7023 3.1671 2.7385 31 1 4.4033 3.5594 3.9876 32 1 3.5166 1.1895 3.8091 33 1 4.8156 0.7976 2.5599 34 1 3.2714 1.0163 -2.1386 35 1 4.6681 2.0486 -1.7071 36 1 6.1930 0.4484 0.3279 37 1 5.6609 -1.2641 0.2895 38 1 3.4855 -0.6352 0.7871 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707468023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:35 Heat of formation + Delta-G solvation = -82.634278 kcal Electronic energy + Delta-G solvation = -22944.644355 eV Core-core repulsion = 19510.441027 eV Total energy + Delta-G solvation = -3434.203327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.61334 -40.33287 -38.00867 -36.04669 -35.56819 -31.53682 -30.36474 -29.57331 -27.49414 -26.10979 -24.92452 -22.50450 -21.35175 -20.33854 -19.58949 -18.56892 -17.46092 -16.61387 -16.46024 -15.86337 -15.62153 -15.23720 -15.01263 -14.61699 -13.91362 -13.66852 -13.27036 -12.94856 -12.80207 -12.46888 -12.10339 -11.87711 -11.64272 -11.51644 -11.29688 -10.99425 -10.96851 -10.85950 -10.59225 -10.44933 -10.36179 -9.89967 -9.70736 -9.50880 -9.17589 -8.54393 -8.37394 -7.79280 -7.60205 -5.72858 -3.75369 2.87289 3.16247 3.39442 3.43553 3.48291 4.22088 4.41904 4.56258 4.61905 4.75234 4.82975 5.20912 5.27647 5.37678 5.45701 5.51328 5.60459 5.74504 5.75816 5.86208 5.95041 6.10199 6.30966 6.45658 6.58429 6.79442 6.91254 7.01858 7.10039 7.48757 7.55637 7.60413 7.80813 7.97965 8.29144 8.46905 8.57166 8.81752 9.27479 9.77829 11.21729 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.008286 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.504307 B = 3378.347746 C = 4119.246198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.368 6.368 3 C 0.467 3.533 4 O -0.466 6.466 5 C 0.134 3.866 6 C -0.050 4.050 7 C 0.014 3.986 8 C -0.467 4.467 9 H 0.075 0.925 10 C 0.054 3.946 11 N -0.882 5.882 12 Si 0.887 3.113 13 H -0.281 1.281 14 H -0.291 1.291 15 H -0.280 1.280 16 C -0.200 4.200 17 C -0.163 4.163 18 C -0.167 4.167 19 C 0.050 3.950 20 H 0.096 0.904 21 F -0.208 7.208 22 C 0.020 3.980 23 N -0.629 5.629 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.253 0.747 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -7.137 -11.374 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.286 6.286 3 C 0.307 3.693 4 O -0.349 6.349 5 C 0.042 3.958 6 C -0.088 4.088 7 C 0.014 3.986 8 C -0.504 4.504 9 H 0.093 0.907 10 C -0.146 4.146 11 N -0.521 5.521 12 Si 0.716 3.284 13 H -0.207 1.207 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.238 4.238 17 C -0.201 4.201 18 C -0.207 4.207 19 C 0.012 3.988 20 H 0.114 0.886 21 F -0.189 7.189 22 C -0.110 4.110 23 N -0.259 5.259 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.866 -6.475 -10.608 13.015 hybrid contribution -1.573 -0.029 -0.481 1.645 sum 2.294 -6.504 -11.088 13.058 Atomic orbital electron populations 1.23122 0.77017 1.02754 1.02413 1.86363 1.22909 1.34305 1.84981 1.23309 0.91311 0.81385 0.73255 1.90637 1.66326 1.35825 1.42069 1.21698 0.86086 0.96755 0.91292 1.21065 0.98319 0.91203 0.98171 1.18778 0.93044 1.01565 0.85244 1.21054 0.97168 1.39522 0.92687 0.90662 1.24984 0.97009 0.95984 0.96586 1.70053 1.35320 1.47573 0.99162 0.86741 0.85689 0.79429 0.76526 1.20719 1.21667 1.20537 1.22785 0.94196 1.02169 1.04666 1.23015 1.03226 0.90092 1.03785 1.23556 1.00496 0.98917 0.97702 1.23228 0.94508 0.82476 0.98634 0.88607 1.92822 1.81686 1.53852 1.90548 1.23821 0.95744 1.02789 0.88680 1.63097 1.06025 1.09149 1.47580 0.88879 0.91583 0.92702 0.92637 0.91414 0.93654 0.94699 0.88607 0.88150 0.90599 0.90056 0.88215 0.88188 0.89352 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.56 101.05 1.07 1.69 16 2 O -0.37 -6.68 9.32 -39.24 -0.37 -7.04 16 3 C 0.47 9.41 5.81 36.00 0.21 9.61 16 4 O -0.47 -10.76 12.57 -18.75 -0.24 -11.00 16 5 C 0.13 2.36 0.78 -131.68 -0.10 2.26 16 6 C -0.05 -1.01 4.13 -26.73 -0.11 -1.12 16 7 C 0.01 0.35 1.88 -155.66 -0.29 0.06 16 8 C -0.47 -13.10 7.71 -34.44 -0.27 -13.37 16 9 H 0.08 2.19 5.57 -52.49 -0.29 1.89 16 10 C 0.05 1.54 5.28 -17.82 -0.09 1.45 16 11 N -0.88 -25.44 8.59 55.43 0.48 -24.96 16 12 Si 0.89 22.44 29.54 -169.99 -5.02 17.42 16 13 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 16 C -0.20 -5.07 9.32 -26.73 -0.25 -5.31 16 17 C -0.16 -4.04 8.23 -26.73 -0.22 -4.26 16 18 C -0.17 -2.27 6.01 -25.37 -0.15 -2.43 16 19 C 0.05 0.58 4.87 -24.87 -0.12 0.46 16 20 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 21 F -0.21 -2.87 17.20 2.25 0.04 -2.83 16 22 C 0.02 0.25 7.30 -1.89 -0.01 0.24 16 23 N -0.63 -10.44 3.52 -97.62 -0.34 -10.78 16 24 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 1.14 8.13 -51.92 -0.42 0.72 16 26 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.06 1.01 7.90 -51.93 -0.41 0.60 16 28 H 0.07 1.43 7.66 -51.93 -0.40 1.03 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 31 H 0.10 2.71 6.51 -51.93 -0.34 2.38 16 32 H 0.10 2.84 6.06 -51.93 -0.31 2.52 16 33 H 0.08 1.69 5.92 -51.93 -0.31 1.38 16 34 H 0.08 1.13 7.66 -51.93 -0.40 0.73 16 35 H 0.10 1.17 7.69 -51.93 -0.40 0.78 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.35 5.89 7.44 -39.30 -0.29 5.60 16 LS Contribution 301.52 15.07 4.54 4.54 Total: -1.00 -31.59 301.52 -6.49 -38.08 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.24 Total: 7.29 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -0.35 Total: -10.72 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.13 Total: -35.75 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.60 Total: -18.04 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.59 -6.49 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707468023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.554 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds