Wall clock time and date at job start Mon Mar 30 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00324 * 2 1 4 4 O 1.20823 * 119.99874 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00244 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.90979 * 205.40304 * 5 3 2 7 7 C 1.52999 * 109.46848 * 64.71846 * 6 5 3 8 8 C 1.50703 * 115.55108 * 273.79338 * 7 6 5 9 9 H 1.07997 * 119.99943 * 357.42928 * 8 7 6 10 10 C 1.37877 * 119.99625 * 177.42418 * 8 7 6 11 11 N 1.31507 * 120.00334 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99736 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47308 * 59.99982 * 12 10 8 14 14 H 1.48497 * 109.47539 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47335 * 300.00626 * 12 10 8 16 16 C 1.53003 * 117.49306 * 128.08945 * 7 6 5 17 17 C 1.53001 * 60.00023 * 252.50751 * 16 7 6 18 18 C 1.53995 * 109.91597 * 84.29917 * 5 3 2 19 19 C 1.54597 * 105.14288 * 239.42324 * 18 5 3 20 20 H 1.09000 * 110.72723 * 219.68731 * 19 18 5 21 21 F 1.39905 * 110.72314 * 96.39931 * 19 18 5 22 22 C 1.54943 * 102.91963 * 338.04650 * 19 18 5 23 23 N 1.47900 * 109.91468 * 326.71348 * 5 3 2 24 24 H 1.09001 * 109.47677 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46718 * 299.99794 * 1 2 3 26 26 H 1.08998 * 109.47699 * 59.99327 * 1 2 3 27 27 H 1.09000 * 109.47178 * 184.72235 * 6 5 3 28 28 H 1.09006 * 109.46653 * 304.71894 * 6 5 3 29 29 H 0.96996 * 120.00022 * 179.97438 * 11 10 8 30 30 H 1.08996 * 117.50543 * 359.97438 * 16 7 6 31 31 H 1.09000 * 117.49805 * 145.02090 * 16 7 6 32 32 H 1.08996 * 117.50158 * 252.51614 * 17 16 7 33 33 H 1.09006 * 117.49664 * 107.48640 * 17 16 7 34 34 H 1.08999 * 110.31248 * 358.34005 * 18 5 3 35 35 H 1.09005 * 110.31019 * 120.50858 * 18 5 3 36 36 H 1.09005 * 110.66461 * 278.97582 * 22 19 18 37 37 H 1.09000 * 110.66822 * 155.84970 * 22 19 18 38 38 H 1.00894 * 111.00519 * 24.16771 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0189 2.5996 0.6166 7 6 3.6112 2.6410 2.0907 8 6 2.2165 3.1417 2.3655 9 1 1.5941 3.4806 1.5506 10 6 1.7353 3.1669 3.6573 11 7 2.4934 2.7546 4.6497 12 14 0.0064 3.7867 3.9979 13 1 -0.9743 2.9453 3.2661 14 1 -0.2678 3.7130 5.4555 15 1 -0.1132 5.1953 3.5429 16 6 4.6973 2.9764 3.1148 17 6 4.1625 1.5470 3.0072 18 6 4.0971 1.1589 -1.4415 19 6 5.0148 -0.0853 -1.4350 20 1 5.9060 0.0895 -2.0378 21 9 4.3224 -1.2135 -1.8880 22 6 5.3859 -0.2342 0.0619 23 7 4.1305 0.1401 0.7621 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 5.1025 2.6863 0.5367 28 1 3.5481 3.4272 0.0859 29 1 2.1549 2.7727 5.5585 30 1 5.7023 3.1671 2.7385 31 1 4.4033 3.5594 3.9876 32 1 3.5166 1.1895 3.8091 33 1 4.8156 0.7976 2.5599 34 1 3.2714 1.0163 -2.1386 35 1 4.6681 2.0486 -1.7071 36 1 6.1930 0.4484 0.3279 37 1 5.6609 -1.2641 0.2895 38 1 3.4855 -0.6352 0.7871 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707468023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:35 Heat of formation + Delta-G solvation = -101.922824 kcal Electronic energy + Delta-G solvation = -22945.480769 eV Core-core repulsion = 19510.441027 eV Total energy + Delta-G solvation = -3435.039742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.57412 -41.79276 -39.41857 -37.67986 -37.24536 -33.57557 -31.73815 -30.70018 -28.90114 -27.80180 -26.68450 -23.85517 -22.46594 -22.26998 -21.11291 -20.32488 -18.79540 -18.01952 -17.91665 -17.50320 -17.04772 -16.76681 -16.21234 -16.10436 -15.41367 -15.10900 -14.72175 -14.45361 -14.19150 -13.86008 -13.69736 -13.24989 -13.10304 -12.95138 -12.90462 -12.68321 -12.48094 -12.35593 -12.12915 -11.98023 -11.93121 -11.66656 -11.53702 -11.23711 -10.98413 -10.59460 -10.15351 -9.79378 -9.15481 -7.88793 -5.95717 1.33654 1.34266 1.36989 1.42758 1.81693 2.44807 3.11797 3.15050 3.41551 3.55074 3.62592 3.79734 4.07989 4.21982 4.28590 4.33565 4.34501 4.51185 4.62619 4.65368 4.75263 4.83967 4.85863 4.93571 5.08083 5.13696 5.20180 5.48067 5.54603 5.59166 5.78023 5.83270 5.89911 6.22262 6.34535 6.50894 6.67645 6.93790 7.15303 7.58464 9.02253 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.008286 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.504307 B = 3378.347746 C = 4119.246198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.461 3.539 4 O -0.508 6.508 5 C 0.134 3.866 6 C -0.043 4.043 7 C 0.005 3.995 8 C -0.478 4.478 9 H 0.061 0.939 10 C 0.008 3.992 11 N -0.898 5.898 12 Si 0.935 3.065 13 H -0.283 1.283 14 H -0.285 1.285 15 H -0.279 1.279 16 C -0.205 4.205 17 C -0.149 4.149 18 C -0.162 4.162 19 C 0.058 3.942 20 H 0.138 0.862 21 F -0.221 7.221 22 C 0.020 3.980 23 N -0.650 5.650 24 H 0.134 0.866 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.249 0.751 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 -8.191 -13.094 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.303 3.697 4 O -0.393 6.393 5 C 0.042 3.958 6 C -0.081 4.081 7 C 0.005 3.995 8 C -0.516 4.516 9 H 0.079 0.921 10 C -0.189 4.189 11 N -0.538 5.538 12 Si 0.762 3.238 13 H -0.209 1.209 14 H -0.210 1.210 15 H -0.204 1.204 16 C -0.243 4.243 17 C -0.187 4.187 18 C -0.201 4.201 19 C 0.021 3.979 20 H 0.156 0.844 21 F -0.202 7.202 22 C -0.110 4.110 23 N -0.280 5.280 24 H 0.152 0.848 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.341 -7.547 -12.335 15.416 hybrid contribution -2.069 0.277 0.063 2.089 sum 3.272 -7.270 -12.272 14.634 Atomic orbital electron populations 1.23374 0.75711 1.05178 1.01545 1.86365 1.24283 1.33484 1.84443 1.24010 0.92610 0.81204 0.71902 1.90613 1.67445 1.37075 1.44210 1.21607 0.84447 0.95853 0.93890 1.20961 0.99826 0.92522 0.94816 1.18916 0.91474 1.01074 0.88048 1.21308 0.98870 1.39227 0.92216 0.92142 1.25586 0.99858 0.96707 0.96794 1.70210 1.36222 1.48370 0.99022 0.85987 0.82482 0.78817 0.76467 1.20863 1.21049 1.20435 1.22699 0.95707 1.02121 1.03809 1.22843 1.02850 0.90346 1.02617 1.23560 1.00977 1.01149 0.94448 1.23337 0.94964 0.80880 0.98764 0.84442 1.92806 1.82192 1.54535 1.90651 1.23986 0.93984 1.04167 0.88835 1.62966 1.07356 1.08834 1.48866 0.84827 0.94283 0.91763 0.89842 0.92812 0.94092 0.91812 0.92238 0.92005 0.87614 0.90554 0.85918 0.86758 0.87714 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.07 10.56 113.37 1.20 2.26 16 2 O -0.37 -13.19 9.32 -51.37 -0.48 -13.67 16 3 C 0.46 18.43 5.81 71.24 0.41 18.84 16 4 O -0.51 -23.90 12.57 21.97 0.28 -23.62 16 5 C 0.13 4.49 0.78 2.92 0.00 4.49 16 6 C -0.04 -1.69 4.13 30.59 0.13 -1.56 16 7 C 0.01 0.26 1.88 -52.93 -0.10 0.16 16 8 C -0.48 -27.42 7.71 25.60 0.20 -27.22 16 9 H 0.06 3.62 5.57 -2.91 -0.02 3.60 16 10 C 0.01 0.47 5.28 84.66 0.45 0.92 16 11 N -0.90 -53.21 8.59 21.45 0.18 -53.02 16 12 Si 0.93 47.17 29.54 68.60 2.03 49.20 16 13 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 14 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 15 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 16 C -0.21 -10.30 9.32 30.60 0.29 -10.02 16 17 C -0.15 -7.29 8.23 30.60 0.25 -7.04 16 18 C -0.16 -3.88 6.01 31.47 0.19 -3.69 16 19 C 0.06 1.11 4.87 31.80 0.15 1.26 16 20 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 21 F -0.22 -5.33 17.20 44.97 0.77 -4.56 16 22 C 0.02 0.41 7.30 86.65 0.63 1.04 16 23 N -0.65 -20.06 3.52 -462.76 -1.63 -21.69 16 24 H 0.13 2.86 8.14 -2.39 -0.02 2.85 16 25 H 0.04 1.38 8.13 -2.38 -0.02 1.36 16 26 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 27 H 0.08 2.74 7.90 -2.39 -0.02 2.73 16 28 H 0.05 2.23 7.66 -2.38 -0.02 2.21 16 29 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.06 2.78 8.05 -2.39 -0.02 2.77 16 31 H 0.06 3.43 6.51 -2.39 -0.02 3.41 16 32 H 0.06 3.55 6.06 -2.39 -0.01 3.53 16 33 H 0.11 4.49 5.92 -2.38 -0.01 4.47 16 34 H 0.08 1.93 7.66 -2.39 -0.02 1.91 16 35 H 0.12 2.38 7.69 -2.38 -0.02 2.36 16 36 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.35 11.10 7.44 -89.70 -0.67 10.43 16 Total: -1.00 -70.70 301.52 5.36 -65.34 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.41 Total: 22.58 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 3.80 Total: -20.55 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.45 Total: -74.72 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.20 Total: -37.29 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.77 Total: -4.56 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -70.70 5.36 -65.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707468023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.585 kcal (2) G-P(sol) polarization free energy of solvation -70.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds