Wall clock time and date at job start Mon Mar 30 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42904 * 110.27180 * 132.60865 * 3 2 1 5 5 C 1.54591 * 110.39548 * 10.46232 * 3 2 1 6 6 C 1.54943 * 102.92190 * 262.99576 * 5 3 2 7 7 N 1.48531 * 103.22595 * 322.58551 * 6 5 3 8 8 C 1.46896 * 111.00128 * 159.71676 * 7 6 5 9 9 C 1.50706 * 109.46766 * 52.60708 * 8 7 6 10 10 C 1.38630 * 119.75209 * 90.00056 * 9 8 7 11 11 C 1.37620 * 120.25072 * 180.02562 * 10 9 8 12 12 C 1.40719 * 119.74290 * 359.97438 * 11 10 9 13 13 C 1.41392 * 120.24158 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99930 * 155.58789 * 13 12 11 15 15 C 1.39946 * 120.00456 * 335.31757 * 13 12 11 16 16 N 1.30827 * 119.99750 * 342.55579 * 15 13 12 17 17 Si 1.86793 * 120.00145 * 162.55587 * 15 13 12 18 18 H 1.48500 * 109.47265 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47352 * 119.99863 * 17 15 13 20 20 H 1.48500 * 109.47201 * 240.00187 * 17 15 13 21 21 C 1.40718 * 119.51094 * 0.28022 * 12 11 10 22 22 C 1.37616 * 119.74516 * 359.46561 * 21 12 11 23 23 C 1.47904 * 105.82071 * 39.20725 * 7 6 5 24 24 H 4.40026 * 5.37329 * 180.02562 * 4 1 2 25 25 H 0.96702 * 113.99838 * 302.08671 * 4 3 2 26 26 H 1.09000 * 110.72607 * 21.35724 * 5 3 2 27 27 H 1.08998 * 110.72597 * 144.46194 * 5 3 2 28 28 H 1.08998 * 110.66521 * 204.14994 * 6 5 3 29 29 H 1.08991 * 110.66432 * 81.01882 * 6 5 3 30 30 H 1.08991 * 109.47525 * 292.61176 * 8 7 6 31 31 H 1.09005 * 109.47392 * 172.60044 * 8 7 6 32 32 H 1.07999 * 119.87406 * 359.97438 * 10 9 8 33 33 H 1.08001 * 120.13122 * 180.02562 * 11 10 9 34 34 H 0.96989 * 120.00028 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.12333 * 179.69941 * 21 12 11 36 36 H 1.07994 * 119.87881 * 180.27182 * 22 21 12 37 37 H 1.08999 * 109.91893 * 94.02251 * 23 7 6 38 38 H 1.09002 * 109.91513 * 215.31778 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1407 0.9084 -0.9866 5 6 3.1854 -1.4240 -0.2631 6 6 3.4790 -1.9523 1.1636 7 7 3.9993 -0.7535 1.8695 8 6 3.8862 -0.9096 3.3257 9 6 4.5267 -2.2084 3.7429 10 6 5.8722 -2.2362 4.0758 11 6 6.4677 -3.4166 4.4576 12 6 5.7053 -4.5982 4.5100 13 6 6.3063 -5.8167 4.9014 14 1 5.7009 -6.6079 5.3188 15 6 7.6846 -5.9999 4.7428 16 7 8.3605 -5.2174 3.9414 17 14 8.5592 -7.3617 5.6755 18 1 7.5772 -8.1007 6.5089 19 1 9.1907 -8.2965 4.7098 20 1 9.6050 -6.7710 6.5487 21 6 4.3417 -4.5592 4.1647 22 6 3.7659 -3.3665 3.7908 23 6 3.1803 0.3821 1.3930 24 1 -1.0501 -0.0001 0.0004 25 1 2.8368 0.7172 -1.8845 26 1 2.4301 -2.0379 -0.7540 27 1 4.0973 -1.3873 -0.8590 28 1 4.2326 -2.7392 1.1348 29 1 2.5648 -2.3107 1.6367 30 1 2.8339 -0.9159 3.6098 31 1 4.3913 -0.0801 3.8205 32 1 6.4554 -1.3282 4.0344 33 1 7.5159 -3.4360 4.7169 34 1 9.3158 -5.3441 3.8317 35 1 3.7484 -5.4610 4.1967 36 1 2.7186 -3.3332 3.5297 37 1 2.3481 0.5522 2.0761 38 1 3.7952 1.2793 1.3219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708152652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:14 Heat of formation + Delta-G solvation = 31.296474 kcal Electronic energy + Delta-G solvation = -19954.031750 eV Core-core repulsion = 16955.538055 eV Total energy + Delta-G solvation = -2998.493695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.63675 -37.66648 -35.97496 -33.80884 -32.99109 -31.35123 -29.57625 -29.31643 -28.14163 -26.19022 -23.65945 -21.92671 -21.16060 -20.84552 -19.71971 -19.03453 -17.29552 -16.77529 -15.80342 -15.34726 -14.85917 -14.44608 -14.27929 -14.09886 -13.75031 -13.53813 -13.08068 -12.59437 -12.11870 -11.98295 -11.91228 -11.60829 -11.49020 -11.31048 -11.09260 -11.02434 -10.87034 -10.78461 -10.71998 -10.48348 -10.33887 -10.01975 -9.55637 -9.36790 -9.12642 -8.08626 -7.43790 -7.28604 -6.75570 -4.35049 2.50918 2.55670 2.73249 3.06886 3.08417 3.12585 3.16417 3.91604 3.93486 4.13924 4.41313 4.66925 4.71967 4.82486 5.39917 5.45779 5.58233 5.70309 5.73719 5.79259 5.84688 5.88368 5.99530 6.15894 6.24722 6.34635 6.38300 6.48256 6.96245 7.06754 7.17156 7.29294 7.33897 7.35261 7.41373 7.46537 7.62235 7.87039 8.06240 8.14793 8.30565 8.65388 8.89984 8.98269 10.18607 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.037411 B = 0.003742 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.266803 B = 7481.462424 C = 7575.915541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.209 4.209 3 C 0.231 3.769 4 O -0.541 6.541 5 C -0.145 4.145 6 C 0.048 3.952 7 N -0.504 5.504 8 C 0.111 3.889 9 C -0.214 4.214 10 C -0.078 4.078 11 C -0.167 4.167 12 C 0.113 3.887 13 C -0.463 4.463 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.790 5.790 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.272 1.272 21 C -0.228 4.228 22 C -0.083 4.083 23 C 0.051 3.949 24 H 0.220 0.780 25 H 0.378 0.622 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.280 0.720 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.087 7.228 -6.588 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.210 4.210 3 C 0.190 3.810 4 O -0.346 6.346 5 C -0.183 4.183 6 C -0.079 4.079 7 N -0.229 5.229 8 C -0.016 4.016 9 C -0.216 4.216 10 C -0.097 4.097 11 C -0.186 4.186 12 C 0.110 3.890 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.416 5.416 17 Si 0.731 3.269 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.197 1.197 21 C -0.247 4.247 22 C -0.102 4.102 23 C -0.077 4.077 24 H 0.236 0.764 25 H 0.226 0.774 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.992 7.622 -6.261 12.695 hybrid contribution -0.967 -1.023 0.007 1.408 sum -8.959 6.600 -6.254 12.764 Atomic orbital electron populations 1.25013 0.95886 1.00006 0.99195 1.23833 0.94905 1.00749 1.01480 1.18861 0.81390 0.90165 0.90579 1.86651 1.73555 1.55067 1.19361 1.23266 1.01761 0.94022 0.99297 1.23105 0.99377 0.94429 0.91038 1.65054 1.49227 1.02073 1.06541 1.20947 0.97341 0.97161 0.86120 1.18832 0.94873 0.93129 1.14763 1.20510 0.93311 0.96939 0.98966 1.21313 1.00287 0.91320 1.05728 1.17626 0.90842 0.92934 0.87550 1.19631 0.92434 1.00334 1.36873 0.90504 1.25908 0.97899 0.97023 0.93355 1.69837 1.09412 1.35304 1.27013 0.86295 0.79607 0.80833 0.80184 1.18441 1.20018 1.19694 1.20929 0.96585 0.95982 1.11218 1.20355 0.96617 0.93051 1.00181 1.22838 0.96463 0.97179 0.91200 0.76362 0.77439 0.90811 0.88871 0.88635 0.93726 0.95646 0.91228 0.89336 0.86492 0.90911 0.89198 0.90054 0.92927 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 19.25 29.55 0.57 -1.38 16 2 C -0.21 -2.64 11.82 -37.12 -0.44 -3.08 16 3 C 0.23 3.08 1.29 -92.05 -0.12 2.96 16 4 O -0.54 -6.71 12.92 -35.23 -0.46 -7.17 16 5 C -0.15 -1.95 6.33 -24.87 -0.16 -2.11 16 6 C 0.05 0.79 4.96 -1.90 -0.01 0.78 16 7 N -0.50 -8.64 5.39 -231.89 -1.25 -9.89 16 8 C 0.11 2.00 5.18 -4.98 -0.03 1.97 16 9 C -0.21 -4.60 4.62 -104.33 -0.48 -5.09 16 10 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 11 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 12 C 0.11 3.00 5.57 -106.82 -0.60 2.40 16 13 C -0.46 -12.26 9.05 -37.74 -0.34 -12.61 16 14 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 15 C 0.08 1.91 5.15 -17.34 -0.09 1.82 16 16 N -0.79 -20.43 10.95 55.55 0.61 -19.82 16 17 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 21 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 22 C -0.08 -1.83 8.30 -39.66 -0.33 -2.16 16 23 C 0.05 0.76 6.15 -2.75 -0.02 0.74 16 24 H 0.22 1.46 7.80 -54.09 -0.42 1.04 16 25 H 0.38 3.09 9.06 45.56 0.41 3.51 16 26 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 27 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 28 H 0.10 1.80 7.73 -51.93 -0.40 1.40 16 29 H 0.04 0.74 7.07 -51.93 -0.37 0.37 16 30 H 0.03 0.44 7.75 -51.93 -0.40 0.03 16 31 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 32 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 34 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 35 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.08 1.60 7.37 -52.49 -0.39 1.22 16 37 H 0.05 0.76 7.09 -51.93 -0.37 0.39 16 38 H 0.09 1.39 7.96 -51.93 -0.41 0.97 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -28.66 320.33 -8.75 -37.41 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.31 Total: 9.60 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -3.14 Total: -28.53 kcal Atomic # 7 Polarization: -29.07 SS G_CDS: -0.64 Total: -29.71 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.46 Total: -7.17 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.66 -8.75 -37.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708152652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.706 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds