Wall clock time and date at job start Mon Mar 30 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42904 * 110.27180 * 132.60865 * 3 2 1 5 5 C 1.54591 * 110.39548 * 10.46232 * 3 2 1 6 6 C 1.54943 * 102.92190 * 262.99576 * 5 3 2 7 7 N 1.48531 * 103.22595 * 322.58551 * 6 5 3 8 8 C 1.46896 * 111.00128 * 159.71676 * 7 6 5 9 9 C 1.50706 * 109.46766 * 52.60708 * 8 7 6 10 10 C 1.38630 * 119.75209 * 90.00056 * 9 8 7 11 11 C 1.37620 * 120.25072 * 180.02562 * 10 9 8 12 12 C 1.40719 * 119.74290 * 359.97438 * 11 10 9 13 13 C 1.41392 * 120.24158 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99930 * 155.58789 * 13 12 11 15 15 C 1.39946 * 120.00456 * 335.31757 * 13 12 11 16 16 N 1.30827 * 119.99750 * 342.55579 * 15 13 12 17 17 Si 1.86793 * 120.00145 * 162.55587 * 15 13 12 18 18 H 1.48500 * 109.47265 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47352 * 119.99863 * 17 15 13 20 20 H 1.48500 * 109.47201 * 240.00187 * 17 15 13 21 21 C 1.40718 * 119.51094 * 0.28022 * 12 11 10 22 22 C 1.37616 * 119.74516 * 359.46561 * 21 12 11 23 23 C 1.47904 * 105.82071 * 39.20725 * 7 6 5 24 24 H 4.40026 * 5.37329 * 180.02562 * 4 1 2 25 25 H 0.96702 * 113.99838 * 302.08671 * 4 3 2 26 26 H 1.09000 * 110.72607 * 21.35724 * 5 3 2 27 27 H 1.08998 * 110.72597 * 144.46194 * 5 3 2 28 28 H 1.08998 * 110.66521 * 204.14994 * 6 5 3 29 29 H 1.08991 * 110.66432 * 81.01882 * 6 5 3 30 30 H 1.08991 * 109.47525 * 292.61176 * 8 7 6 31 31 H 1.09005 * 109.47392 * 172.60044 * 8 7 6 32 32 H 1.07999 * 119.87406 * 359.97438 * 10 9 8 33 33 H 1.08001 * 120.13122 * 180.02562 * 11 10 9 34 34 H 0.96989 * 120.00028 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.12333 * 179.69941 * 21 12 11 36 36 H 1.07994 * 119.87881 * 180.27182 * 22 21 12 37 37 H 1.08999 * 109.91893 * 94.02251 * 23 7 6 38 38 H 1.09002 * 109.91513 * 215.31778 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1407 0.9084 -0.9866 5 6 3.1854 -1.4240 -0.2631 6 6 3.4790 -1.9523 1.1636 7 7 3.9993 -0.7535 1.8695 8 6 3.8862 -0.9096 3.3257 9 6 4.5267 -2.2084 3.7429 10 6 5.8722 -2.2362 4.0758 11 6 6.4677 -3.4166 4.4576 12 6 5.7053 -4.5982 4.5100 13 6 6.3063 -5.8167 4.9014 14 1 5.7009 -6.6079 5.3188 15 6 7.6846 -5.9999 4.7428 16 7 8.3605 -5.2174 3.9414 17 14 8.5592 -7.3617 5.6755 18 1 7.5772 -8.1007 6.5089 19 1 9.1907 -8.2965 4.7098 20 1 9.6050 -6.7710 6.5487 21 6 4.3417 -4.5592 4.1647 22 6 3.7659 -3.3665 3.7908 23 6 3.1803 0.3821 1.3930 24 1 -1.0501 -0.0001 0.0004 25 1 2.8368 0.7172 -1.8845 26 1 2.4301 -2.0379 -0.7540 27 1 4.0973 -1.3873 -0.8590 28 1 4.2326 -2.7392 1.1348 29 1 2.5648 -2.3107 1.6367 30 1 2.8339 -0.9159 3.6098 31 1 4.3913 -0.0801 3.8205 32 1 6.4554 -1.3282 4.0344 33 1 7.5159 -3.4360 4.7169 34 1 9.3158 -5.3441 3.8317 35 1 3.7484 -5.4610 4.1967 36 1 2.7186 -3.3332 3.5297 37 1 2.3481 0.5522 2.0761 38 1 3.7952 1.2793 1.3219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708152652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:14 Heat of formation + Delta-G solvation = 12.568880 kcal Electronic energy + Delta-G solvation = -19954.843839 eV Core-core repulsion = 16955.538055 eV Total energy + Delta-G solvation = -2999.305784 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83664 -39.35776 -37.23708 -35.55974 -33.98557 -32.77967 -31.20344 -31.05211 -29.42344 -27.79927 -25.28181 -23.13543 -22.69775 -22.48749 -21.34669 -20.00067 -19.21256 -17.74288 -17.21869 -16.87097 -16.27364 -15.87577 -15.74274 -15.43852 -15.13442 -14.99762 -14.56963 -14.29408 -13.80264 -13.53218 -13.30681 -13.07981 -12.97238 -12.68358 -12.64901 -12.40382 -12.32218 -12.16271 -11.99769 -11.74029 -11.59930 -11.37552 -11.23446 -11.00826 -10.97191 -9.46058 -9.32988 -9.13356 -8.62465 -6.32697 0.94161 1.15987 1.38419 1.49343 1.53677 1.66989 1.70425 2.21332 2.66115 2.99388 3.21897 3.34936 3.63004 3.65017 3.81096 4.21026 4.25021 4.29955 4.43330 4.54406 4.57864 4.65055 4.76855 4.77217 4.82425 4.93215 5.02038 5.07448 5.09678 5.17272 5.38830 5.46915 5.71847 5.83309 5.99301 6.07439 6.12090 6.28601 6.39800 6.53153 6.69762 6.72230 6.95519 7.05179 8.34353 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.037411 B = 0.003742 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.266803 B = 7481.462424 C = 7575.915541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.256 4.256 3 C 0.239 3.761 4 O -0.552 6.552 5 C -0.137 4.137 6 C 0.048 3.952 7 N -0.519 5.519 8 C 0.115 3.885 9 C -0.200 4.200 10 C -0.085 4.085 11 C -0.190 4.190 12 C 0.082 3.918 13 C -0.502 4.502 14 H 0.074 0.926 15 C 0.035 3.965 16 N -0.825 5.825 17 Si 0.982 3.018 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.264 1.264 21 C -0.242 4.242 22 C -0.079 4.079 23 C 0.051 3.949 24 H 0.255 0.745 25 H 0.396 0.604 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.287 0.713 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.060 0.940 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 7.964 -7.234 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.257 4.257 3 C 0.198 3.802 4 O -0.360 6.360 5 C -0.175 4.175 6 C -0.080 4.080 7 N -0.244 5.244 8 C -0.011 4.011 9 C -0.202 4.202 10 C -0.104 4.104 11 C -0.210 4.210 12 C 0.079 3.921 13 C -0.532 4.532 14 H 0.092 0.908 15 C -0.180 4.180 16 N -0.451 5.451 17 Si 0.802 3.198 18 H -0.182 1.182 19 H -0.190 1.190 20 H -0.189 1.189 21 C -0.262 4.262 22 C -0.097 4.097 23 C -0.077 4.077 24 H 0.271 0.729 25 H 0.246 0.754 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.776 8.372 -6.930 14.618 hybrid contribution -0.555 -1.111 0.115 1.247 sum -10.331 7.262 -6.815 14.350 Atomic orbital electron populations 1.25884 0.96655 0.97603 0.96765 1.23829 0.95147 1.02982 1.03743 1.18552 0.82260 0.89584 0.89851 1.86599 1.73922 1.54941 1.20559 1.23199 1.02305 0.94652 0.97323 1.23004 0.98201 0.93616 0.93134 1.64939 1.50563 1.03135 1.05773 1.20890 0.97893 0.95249 0.87106 1.19203 0.94072 0.94728 1.12156 1.20729 0.94461 0.96597 0.98641 1.21259 0.99694 0.92399 1.07618 1.17952 0.92068 0.93370 0.88674 1.19866 0.93775 1.00693 1.38821 0.90802 1.26752 0.98055 0.99513 0.93635 1.69892 1.10036 1.37087 1.28071 0.85171 0.78223 0.77624 0.78749 1.18194 1.19048 1.18901 1.21134 0.96112 0.97317 1.11618 1.20615 0.97958 0.92273 0.98888 1.22834 0.96337 0.95939 0.92560 0.72910 0.75374 0.89119 0.89043 0.91742 0.93661 0.94117 0.90318 0.88023 0.88383 0.90201 0.88672 0.87267 0.92215 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 19.25 74.32 1.43 -1.20 16 2 C -0.26 -5.71 11.82 31.12 0.37 -5.34 16 3 C 0.24 5.86 1.29 -11.72 -0.02 5.85 16 4 O -0.55 -12.61 12.92 -148.98 -1.92 -14.53 16 5 C -0.14 -3.45 6.33 31.80 0.20 -3.25 16 6 C 0.05 1.54 4.96 86.65 0.43 1.97 16 7 N -0.52 -17.10 5.39 -887.57 -4.78 -21.88 16 8 C 0.12 3.96 5.18 85.56 0.44 4.40 16 9 C -0.20 -8.48 4.62 -19.67 -0.09 -8.57 16 10 C -0.09 -4.05 9.67 22.22 0.21 -3.83 16 11 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 12 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 13 C -0.50 -27.62 9.05 23.46 0.21 -27.41 16 14 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 15 C 0.04 1.81 5.15 85.26 0.44 2.25 16 16 N -0.82 -44.09 10.95 21.83 0.24 -43.85 16 17 Si 0.98 38.81 29.59 68.60 2.03 40.84 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 19 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 C -0.24 -12.00 9.80 22.73 0.22 -11.78 16 22 C -0.08 -3.41 8.30 22.22 0.18 -3.22 16 23 C 0.05 1.41 6.15 86.45 0.53 1.95 16 24 H 0.25 2.10 7.80 -4.41 -0.03 2.07 16 25 H 0.40 5.62 9.06 -74.06 -0.67 4.95 16 26 H 0.09 1.96 7.84 -2.39 -0.02 1.94 16 27 H 0.09 2.31 8.08 -2.39 -0.02 2.29 16 28 H 0.06 2.44 7.73 -2.39 -0.02 2.42 16 29 H 0.05 1.42 7.07 -2.39 -0.02 1.40 16 30 H 0.04 1.29 7.75 -2.39 -0.02 1.27 16 31 H 0.08 2.56 8.08 -2.38 -0.02 2.54 16 32 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.10 5.56 6.16 -2.91 -0.02 5.55 16 34 H 0.29 13.85 8.30 -92.72 -0.77 13.08 16 35 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.11 4.08 7.37 -2.91 -0.02 4.06 16 37 H 0.06 1.57 7.09 -2.39 -0.02 1.55 16 38 H 0.09 2.57 7.96 -2.39 -0.02 2.55 16 Total: -1.00 -63.37 320.33 0.60 -62.77 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.39 Total: 30.52 kcal Atomic # 6 Polarization: -58.52 SS G_CDS: 4.65 Total: -53.86 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -4.54 Total: -65.73 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.92 Total: -14.53 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -63.37 0.60 -62.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708152652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.334 kcal (2) G-P(sol) polarization free energy of solvation -63.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds