Wall clock time and date at job start Mon Mar 30 2020 05:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42896 * 110.76480 * 107.95653 * 3 2 1 5 5 C 1.55141 * 110.70391 * 231.15644 * 3 2 1 6 6 C 1.54905 * 101.65293 * 82.73234 * 5 3 2 7 7 N 1.47848 * 104.79735 * 37.06612 * 6 5 3 8 8 C 1.46894 * 111.00151 * 213.63700 * 7 6 5 9 9 C 1.50705 * 109.47158 * 290.84548 * 8 7 6 10 10 C 1.38640 * 119.74694 * 269.72712 * 9 8 7 11 11 C 1.37613 * 120.24538 * 179.72103 * 10 9 8 12 12 C 1.40723 * 119.74731 * 0.57058 * 11 10 9 13 13 C 1.41390 * 120.24379 * 179.68443 * 12 11 10 14 14 H 1.08000 * 119.99831 * 204.39932 * 13 12 11 15 15 C 1.39942 * 120.00505 * 24.40135 * 13 12 11 16 16 N 1.30824 * 119.99904 * 17.85488 * 15 13 12 17 17 Si 1.86803 * 120.00117 * 197.86047 * 15 13 12 18 18 H 1.48493 * 109.47019 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47090 * 119.99971 * 17 15 13 20 20 H 1.48502 * 109.46634 * 239.99577 * 17 15 13 21 21 C 1.40720 * 119.50729 * 359.70195 * 12 11 10 22 22 C 1.37614 * 119.74441 * 0.02562 * 21 12 11 23 23 C 1.47442 * 108.56626 * 335.91100 * 7 6 5 24 24 H 4.40989 * 5.33041 * 180.02562 * 4 1 2 25 25 H 0.96701 * 113.99863 * 56.79516 * 4 3 2 26 26 H 1.09003 * 110.98778 * 200.82518 * 5 3 2 27 27 H 1.09000 * 110.99254 * 324.60231 * 5 3 2 28 28 H 1.09001 * 110.37544 * 278.23960 * 6 5 3 29 29 H 1.09004 * 110.37518 * 155.89827 * 6 5 3 30 30 H 1.09001 * 109.47441 * 50.84116 * 8 7 6 31 31 H 1.09003 * 109.46924 * 170.84779 * 8 7 6 32 32 H 1.08002 * 119.87442 * 359.97438 * 10 9 8 33 33 H 1.08005 * 120.12735 * 180.28151 * 11 10 9 34 34 H 0.96998 * 119.99988 * 180.02562 * 16 15 13 35 35 H 1.07996 * 120.12528 * 179.97438 * 21 12 11 36 36 H 1.07997 * 119.87046 * 179.97438 * 22 21 12 37 37 H 1.08994 * 109.89480 * 120.39366 * 23 7 6 38 38 H 1.09010 * 109.88177 * 241.58265 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1524 0.4128 -1.2711 5 6 3.1941 0.9111 1.1303 6 6 3.1256 -0.0349 2.3550 7 7 3.4867 -1.3667 1.8240 8 6 2.7575 -2.4297 2.5284 9 6 3.2635 -2.5328 3.9443 10 6 4.3169 -3.3851 4.2379 11 6 4.7908 -3.4830 5.5261 12 6 4.1943 -2.7229 6.5493 13 6 4.6686 -2.8204 7.8777 14 1 4.0158 -2.5780 8.7032 15 6 5.9838 -3.2308 8.1229 16 7 6.8718 -3.1888 7.1631 17 14 6.4714 -3.8388 9.8205 18 1 5.2925 -3.7882 10.7219 19 1 6.9615 -5.2373 9.7236 20 1 7.5483 -2.9736 10.3656 21 6 3.1221 -1.8655 6.2404 22 6 2.6683 -1.7793 4.9442 23 6 3.1924 -1.3918 0.3795 24 1 -1.0500 0.0001 0.0002 25 1 2.8391 1.2821 -1.5562 26 1 4.2218 1.2115 0.9259 27 1 2.5558 1.7830 1.2735 28 1 2.1162 -0.0513 2.7660 29 1 3.8410 0.2769 3.1160 30 1 1.6932 -2.1946 2.5393 31 1 2.9148 -3.3790 2.0164 32 1 4.7697 -3.9713 3.4520 33 1 5.6145 -4.1441 5.7519 34 1 7.7833 -3.4737 7.3329 35 1 2.6567 -1.2779 7.0179 36 1 1.8453 -1.1223 4.7050 37 1 4.1040 -1.5978 -0.1812 38 1 2.4432 -2.1546 0.1670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708152653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:18 Heat of formation + Delta-G solvation = 31.452074 kcal Electronic energy + Delta-G solvation = -19925.877703 eV Core-core repulsion = 16927.390756 eV Total energy + Delta-G solvation = -2998.486947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.68480 -37.61106 -36.03838 -33.80899 -32.93141 -31.37057 -29.54415 -29.29207 -28.22383 -26.19436 -23.58400 -22.18281 -21.08330 -20.80733 -19.73309 -19.07479 -17.26801 -16.79542 -15.85131 -15.34663 -14.91335 -14.41947 -14.31674 -14.08647 -13.75850 -13.58019 -12.89029 -12.65130 -12.32491 -11.97361 -11.92217 -11.60967 -11.49369 -11.42773 -11.10873 -10.99017 -10.87292 -10.78287 -10.74772 -10.46402 -10.34737 -10.03799 -9.54238 -9.34570 -9.10049 -7.99326 -7.40771 -7.26685 -6.73335 -4.32258 2.48892 2.54390 2.75499 3.08471 3.11173 3.13887 3.18169 3.91044 3.94999 4.07846 4.33345 4.61834 4.65883 4.86062 5.35479 5.44113 5.49117 5.69159 5.70369 5.76029 5.83733 5.91734 6.02656 6.09586 6.22965 6.30415 6.39373 6.47369 6.98581 7.08999 7.21424 7.32873 7.34399 7.35447 7.39530 7.44680 7.65031 7.90480 8.08771 8.18079 8.33327 8.67966 8.92597 9.01214 10.20916 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.040535 B = 0.003693 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.596611 B = 7580.867069 C = 7747.722109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.210 4.210 3 C 0.218 3.782 4 O -0.540 6.540 5 C -0.149 4.149 6 C 0.053 3.947 7 N -0.513 5.513 8 C 0.115 3.885 9 C -0.207 4.207 10 C -0.079 4.079 11 C -0.167 4.167 12 C 0.112 3.888 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.791 5.791 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.275 1.275 21 C -0.228 4.228 22 C -0.083 4.083 23 C 0.060 3.940 24 H 0.220 0.780 25 H 0.379 0.621 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.280 0.720 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 5.381 -10.940 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.210 4.210 3 C 0.176 3.824 4 O -0.345 6.345 5 C -0.187 4.187 6 C -0.074 4.074 7 N -0.237 5.237 8 C -0.012 4.012 9 C -0.209 4.209 10 C -0.098 4.098 11 C -0.186 4.186 12 C 0.110 3.890 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.416 5.416 17 Si 0.730 3.270 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.200 1.200 21 C -0.247 4.247 22 C -0.102 4.102 23 C -0.068 4.068 24 H 0.237 0.763 25 H 0.226 0.774 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.929 4.658 -10.879 13.236 hybrid contribution -1.088 0.512 0.603 1.345 sum -7.017 5.169 -10.276 13.474 Atomic orbital electron populations 1.25023 0.95897 1.00006 0.98754 1.23674 0.94778 1.01067 1.01519 1.19259 0.81787 0.97100 0.84259 1.86607 1.72242 1.40112 1.35575 1.23422 1.02469 0.97983 0.94845 1.22919 1.00313 0.87888 0.96303 1.63889 1.56078 1.03536 1.00242 1.20979 0.93478 0.93317 0.93381 1.18804 1.03324 1.06608 0.92156 1.20494 0.95413 0.97950 0.95956 1.21304 1.02718 1.02467 0.92152 1.17619 0.89897 0.88201 0.93291 1.19620 0.96537 1.39991 0.93173 0.90529 1.25903 0.96331 0.93083 0.98842 1.69845 1.03550 1.34226 1.33972 0.86306 0.79203 0.79121 0.82350 1.18452 1.19713 1.20030 1.20919 1.04160 1.04683 0.94980 1.20331 0.98242 0.98134 0.93469 1.22791 1.00671 0.92457 0.90900 0.76337 0.77357 0.88810 0.90678 0.93498 0.89235 0.95705 0.91541 0.89468 0.86521 0.90948 0.89244 0.90105 0.88829 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 19.25 29.55 0.57 -1.38 16 2 C -0.21 -2.65 11.86 -37.12 -0.44 -3.09 16 3 C 0.22 2.80 1.28 -91.59 -0.12 2.69 16 4 O -0.54 -6.33 13.08 -35.23 -0.46 -6.79 16 5 C -0.15 -1.88 6.27 -24.59 -0.15 -2.03 16 6 C 0.05 0.84 5.40 -2.30 -0.01 0.83 16 7 N -0.51 -8.70 5.15 -232.69 -1.20 -9.90 16 8 C 0.11 2.08 4.71 -4.98 -0.02 2.06 16 9 C -0.21 -4.51 5.12 -104.33 -0.53 -5.04 16 10 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 11 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 12 C 0.11 3.01 5.58 -106.82 -0.60 2.42 16 13 C -0.46 -12.38 9.05 -37.75 -0.34 -12.73 16 14 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 15 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 16 N -0.79 -20.61 10.95 55.55 0.61 -20.00 16 17 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 18 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 22 C -0.08 -1.85 8.88 -39.66 -0.35 -2.20 16 23 C 0.06 0.88 6.19 -2.84 -0.02 0.86 16 24 H 0.22 1.54 7.80 -54.09 -0.42 1.12 16 25 H 0.38 2.86 9.06 45.56 0.41 3.27 16 26 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 0.82 8.02 -51.93 -0.42 0.41 16 28 H 0.05 0.75 6.97 -51.93 -0.36 0.39 16 29 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.02 0.43 7.79 -51.93 -0.40 0.03 16 31 H 0.07 1.15 7.97 -51.93 -0.41 0.73 16 32 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 34 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 35 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 36 H 0.08 1.61 7.46 -52.49 -0.39 1.22 16 37 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 38 H 0.06 0.86 7.23 -51.92 -0.38 0.48 16 LS Contribution 322.13 15.07 4.85 4.85 Total: -1.00 -29.07 322.13 -8.79 -37.86 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.35 Total: 9.02 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -3.21 Total: -28.74 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: -0.59 Total: -29.89 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.46 Total: -6.79 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.07 -8.79 -37.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708152653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.314 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds