Wall clock time and date at job start Mon Mar 30 2020 05:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42896 * 110.76480 * 107.95653 * 3 2 1 5 5 C 1.55141 * 110.70391 * 231.15644 * 3 2 1 6 6 C 1.54905 * 101.65293 * 82.73234 * 5 3 2 7 7 N 1.47848 * 104.79735 * 37.06612 * 6 5 3 8 8 C 1.46894 * 111.00151 * 213.63700 * 7 6 5 9 9 C 1.50705 * 109.47158 * 290.84548 * 8 7 6 10 10 C 1.38640 * 119.74694 * 269.72712 * 9 8 7 11 11 C 1.37613 * 120.24538 * 179.72103 * 10 9 8 12 12 C 1.40723 * 119.74731 * 0.57058 * 11 10 9 13 13 C 1.41390 * 120.24379 * 179.68443 * 12 11 10 14 14 H 1.08000 * 119.99831 * 204.39932 * 13 12 11 15 15 C 1.39942 * 120.00505 * 24.40135 * 13 12 11 16 16 N 1.30824 * 119.99904 * 17.85488 * 15 13 12 17 17 Si 1.86803 * 120.00117 * 197.86047 * 15 13 12 18 18 H 1.48493 * 109.47019 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47090 * 119.99971 * 17 15 13 20 20 H 1.48502 * 109.46634 * 239.99577 * 17 15 13 21 21 C 1.40720 * 119.50729 * 359.70195 * 12 11 10 22 22 C 1.37614 * 119.74441 * 0.02562 * 21 12 11 23 23 C 1.47442 * 108.56626 * 335.91100 * 7 6 5 24 24 H 4.40989 * 5.33041 * 180.02562 * 4 1 2 25 25 H 0.96701 * 113.99863 * 56.79516 * 4 3 2 26 26 H 1.09003 * 110.98778 * 200.82518 * 5 3 2 27 27 H 1.09000 * 110.99254 * 324.60231 * 5 3 2 28 28 H 1.09001 * 110.37544 * 278.23960 * 6 5 3 29 29 H 1.09004 * 110.37518 * 155.89827 * 6 5 3 30 30 H 1.09001 * 109.47441 * 50.84116 * 8 7 6 31 31 H 1.09003 * 109.46924 * 170.84779 * 8 7 6 32 32 H 1.08002 * 119.87442 * 359.97438 * 10 9 8 33 33 H 1.08005 * 120.12735 * 180.28151 * 11 10 9 34 34 H 0.96998 * 119.99988 * 180.02562 * 16 15 13 35 35 H 1.07996 * 120.12528 * 179.97438 * 21 12 11 36 36 H 1.07997 * 119.87046 * 179.97438 * 22 21 12 37 37 H 1.08994 * 109.89480 * 120.39366 * 23 7 6 38 38 H 1.09010 * 109.88177 * 241.58265 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1524 0.4128 -1.2711 5 6 3.1941 0.9111 1.1303 6 6 3.1256 -0.0349 2.3550 7 7 3.4867 -1.3667 1.8240 8 6 2.7575 -2.4297 2.5284 9 6 3.2635 -2.5328 3.9443 10 6 4.3169 -3.3851 4.2379 11 6 4.7908 -3.4830 5.5261 12 6 4.1943 -2.7229 6.5493 13 6 4.6686 -2.8204 7.8777 14 1 4.0158 -2.5780 8.7032 15 6 5.9838 -3.2308 8.1229 16 7 6.8718 -3.1888 7.1631 17 14 6.4714 -3.8388 9.8205 18 1 5.2925 -3.7882 10.7219 19 1 6.9615 -5.2373 9.7236 20 1 7.5483 -2.9736 10.3656 21 6 3.1221 -1.8655 6.2404 22 6 2.6683 -1.7793 4.9442 23 6 3.1924 -1.3918 0.3795 24 1 -1.0500 0.0001 0.0002 25 1 2.8391 1.2821 -1.5562 26 1 4.2218 1.2115 0.9259 27 1 2.5558 1.7830 1.2735 28 1 2.1162 -0.0513 2.7660 29 1 3.8410 0.2769 3.1160 30 1 1.6932 -2.1946 2.5393 31 1 2.9148 -3.3790 2.0164 32 1 4.7697 -3.9713 3.4520 33 1 5.6145 -4.1441 5.7519 34 1 7.7833 -3.4737 7.3329 35 1 2.6567 -1.2779 7.0179 36 1 1.8453 -1.1223 4.7050 37 1 4.1040 -1.5978 -0.1812 38 1 2.4432 -2.1546 0.1670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708152653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:17 Heat of formation + Delta-G solvation = 12.584862 kcal Electronic energy + Delta-G solvation = -19926.695847 eV Core-core repulsion = 16927.390756 eV Total energy + Delta-G solvation = -2999.305091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83948 -39.33661 -37.23725 -35.58118 -33.91897 -32.79822 -31.18683 -31.00629 -29.48421 -27.81473 -25.21780 -23.27664 -22.72695 -22.38912 -21.37851 -20.00225 -19.20125 -17.72675 -17.22307 -16.90774 -16.28084 -15.81684 -15.71164 -15.45001 -15.19136 -15.08057 -14.40148 -14.18981 -13.82860 -13.71753 -13.34196 -13.03380 -12.97547 -12.72291 -12.68572 -12.39380 -12.30037 -12.12193 -12.01206 -11.77377 -11.63266 -11.36197 -11.22488 -10.99656 -10.96658 -9.35983 -9.31956 -9.11731 -8.61715 -6.31513 0.95725 1.17371 1.38562 1.49961 1.54038 1.64693 1.68114 2.21812 2.65967 2.99832 3.20800 3.26528 3.60364 3.66845 3.83738 4.24028 4.25636 4.28145 4.44516 4.53249 4.57810 4.64637 4.74802 4.79450 4.81303 4.90047 5.03304 5.08397 5.11736 5.17718 5.39813 5.48560 5.72964 5.90159 6.01667 6.12089 6.13729 6.30496 6.41108 6.51688 6.67159 6.73327 6.96514 7.06573 8.35204 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.040535 B = 0.003693 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.596611 B = 7580.867069 C = 7747.722109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.254 4.254 3 C 0.227 3.773 4 O -0.549 6.549 5 C -0.139 4.139 6 C 0.052 3.948 7 N -0.530 5.530 8 C 0.122 3.878 9 C -0.194 4.194 10 C -0.086 4.086 11 C -0.191 4.191 12 C 0.080 3.920 13 C -0.503 4.503 14 H 0.074 0.926 15 C 0.035 3.965 16 N -0.825 5.825 17 Si 0.982 3.018 18 H -0.258 1.258 19 H -0.264 1.264 20 H -0.266 1.266 21 C -0.243 4.243 22 C -0.080 4.080 23 C 0.059 3.941 24 H 0.253 0.747 25 H 0.397 0.603 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.287 0.713 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 6.031 -12.024 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.254 4.254 3 C 0.185 3.815 4 O -0.357 6.357 5 C -0.177 4.177 6 C -0.076 4.076 7 N -0.255 5.255 8 C -0.005 4.005 9 C -0.196 4.196 10 C -0.105 4.105 11 C -0.210 4.210 12 C 0.078 3.922 13 C -0.532 4.532 14 H 0.092 0.908 15 C -0.180 4.180 16 N -0.451 5.451 17 Si 0.802 3.198 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.190 1.190 21 C -0.263 4.263 22 C -0.099 4.099 23 C -0.069 4.069 24 H 0.269 0.731 25 H 0.248 0.752 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.309 5.331 -11.989 15.019 hybrid contribution -0.759 0.369 0.764 1.138 sum -8.068 5.700 -11.225 14.953 Atomic orbital electron populations 1.25872 0.96704 0.97795 0.96784 1.23781 0.95160 1.03087 1.03412 1.18936 0.82339 0.95694 0.84570 1.86558 1.72508 1.41654 1.34971 1.23355 1.03086 0.97940 0.93288 1.22868 0.99378 0.88188 0.97161 1.63712 1.56376 1.03698 1.01670 1.20876 0.94003 0.94492 0.91142 1.19206 1.01652 1.04478 0.94267 1.20726 0.95948 0.98486 0.95347 1.21260 1.03143 1.03200 0.93411 1.17955 0.91135 0.89248 0.93855 1.19857 0.97667 1.42403 0.93291 0.90829 1.26754 0.95688 0.92481 1.03034 1.69899 1.04141 1.34892 1.36194 0.85173 0.78857 0.78721 0.77014 1.18197 1.18877 1.19049 1.21129 1.04071 1.04694 0.96379 1.20607 0.98625 0.98076 0.92548 1.22747 1.00845 0.94177 0.89149 0.73121 0.75223 0.88734 0.88737 0.93556 0.91575 0.94478 0.90598 0.88013 0.88376 0.90216 0.88725 0.87292 0.89175 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 19.25 74.32 1.43 -1.34 16 2 C -0.25 -5.67 11.86 31.12 0.37 -5.30 16 3 C 0.23 5.33 1.28 -11.42 -0.01 5.31 16 4 O -0.55 -11.61 13.08 -148.98 -1.95 -13.56 16 5 C -0.14 -3.22 6.27 31.98 0.20 -3.02 16 6 C 0.05 1.55 5.40 86.77 0.47 2.02 16 7 N -0.53 -17.23 5.15 -890.09 -4.59 -21.82 16 8 C 0.12 4.19 4.71 85.56 0.40 4.59 16 9 C -0.19 -8.32 5.12 -19.67 -0.10 -8.42 16 10 C -0.09 -4.11 9.67 22.22 0.21 -3.90 16 11 C -0.19 -10.35 8.70 22.73 0.20 -10.15 16 12 C 0.08 4.46 5.58 -21.29 -0.12 4.34 16 13 C -0.50 -27.86 9.05 23.46 0.21 -27.65 16 14 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 15 C 0.04 1.81 5.14 85.26 0.44 2.25 16 16 N -0.83 -44.39 10.95 21.83 0.24 -44.15 16 17 Si 0.98 39.01 29.60 68.60 2.03 41.04 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 21 C -0.24 -12.18 9.80 22.73 0.22 -11.96 16 22 C -0.08 -3.51 8.88 22.22 0.20 -3.31 16 23 C 0.06 1.61 6.19 86.65 0.54 2.15 16 24 H 0.25 2.36 7.80 -4.42 -0.03 2.33 16 25 H 0.40 4.97 9.06 -74.06 -0.67 4.30 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.09 1.82 8.02 -2.39 -0.02 1.80 16 28 H 0.05 1.39 6.97 -2.39 -0.02 1.37 16 29 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.04 1.20 7.79 -2.39 -0.02 1.18 16 31 H 0.08 2.46 7.97 -2.39 -0.02 2.45 16 32 H 0.10 4.45 8.06 -2.91 -0.02 4.42 16 33 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 34 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 35 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.11 4.12 7.46 -2.91 -0.02 4.10 16 37 H 0.09 2.52 8.06 -2.39 -0.02 2.50 16 38 H 0.06 1.71 7.23 -2.38 -0.02 1.69 16 Total: -1.00 -64.04 322.13 0.78 -63.26 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.39 Total: 29.60 kcal Atomic # 6 Polarization: -59.04 SS G_CDS: 4.66 Total: -54.38 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -4.35 Total: -65.96 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.95 Total: -13.56 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -64.04 0.78 -63.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708152653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.845 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds