Wall clock time and date at job start Mon Mar 30 2020 05:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42900 * 110.27642 * 276.78427 * 3 2 1 5 5 C 1.54597 * 110.39132 * 154.63970 * 3 2 1 6 6 C 1.54940 * 102.92147 * 262.99461 * 5 3 2 7 7 N 1.48532 * 103.22816 * 322.58749 * 6 5 3 8 8 C 1.46897 * 111.00036 * 159.71846 * 7 6 5 9 9 H 1.08998 * 109.47228 * 297.60256 * 8 7 6 10 10 C 1.50695 * 109.47280 * 177.60266 * 8 7 6 11 11 H 1.08004 * 120.00266 * 305.06310 * 10 8 7 12 12 C 1.37884 * 120.00269 * 125.05906 * 10 8 7 13 13 N 1.31514 * 119.99919 * 173.01690 * 12 10 8 14 14 Si 1.86800 * 119.99497 * 353.01330 * 12 10 8 15 15 H 1.48500 * 109.46933 * 85.64176 * 14 12 10 16 16 H 1.48502 * 109.46791 * 205.63944 * 14 12 10 17 17 H 1.48497 * 109.47567 * 325.63631 * 14 12 10 18 18 C 1.50698 * 109.47227 * 57.60343 * 8 7 6 19 19 C 1.38237 * 119.99849 * 46.10363 * 18 8 7 20 20 C 1.38240 * 119.99710 * 179.76563 * 19 18 8 21 21 C 1.38230 * 119.99991 * 0.49069 * 20 19 18 22 22 C 1.38239 * 120.00254 * 359.78625 * 21 20 19 23 23 C 1.38236 * 119.99947 * 226.38416 * 18 8 7 24 24 C 1.47907 * 105.81845 * 39.20490 * 7 6 5 25 25 H 4.40029 * 5.37405 * 179.97438 * 4 1 2 26 26 H 0.96702 * 113.99807 * 302.09061 * 4 3 2 27 27 H 1.09000 * 110.72488 * 21.35332 * 5 3 2 28 28 H 1.09004 * 110.72501 * 144.46198 * 5 3 2 29 29 H 1.08997 * 110.66806 * 204.14779 * 6 5 3 30 30 H 1.09002 * 110.66383 * 81.02164 * 6 5 3 31 31 H 0.97001 * 119.99315 * 180.02562 * 13 12 10 32 32 H 1.07997 * 120.00352 * 0.02562 * 19 18 8 33 33 H 1.08000 * 119.99846 * 180.25849 * 20 19 18 34 34 H 1.08007 * 120.00209 * 179.76942 * 21 20 19 35 35 H 1.08001 * 120.00027 * 179.97438 * 22 21 20 36 36 H 1.07991 * 120.00304 * 359.97438 * 23 18 8 37 37 H 1.08996 * 109.91644 * 94.02664 * 24 7 6 38 38 H 1.09004 * 109.91448 * 215.31824 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1412 -0.1575 1.3311 5 6 3.1840 1.3103 -0.6207 6 6 3.4775 0.9040 -2.0867 7 7 3.9991 -0.4808 -1.9576 8 6 3.8862 -1.2065 -3.2298 9 1 2.8357 -1.2910 -3.5080 10 6 4.4776 -2.5841 -3.0764 11 1 5.4915 -2.7003 -2.7230 12 6 3.7242 -3.6963 -3.3872 13 7 4.2799 -4.8883 -3.3859 14 14 1.9142 -3.5099 -3.8099 15 1 1.7727 -3.2026 -5.2558 16 1 1.2009 -4.7751 -3.5006 17 1 1.3301 -2.4040 -3.0093 18 6 4.6315 -0.4567 -4.3038 19 6 5.9026 0.0262 -4.0544 20 6 6.5881 0.7097 -5.0412 21 6 5.9987 0.9192 -6.2738 22 6 4.7253 0.4413 -6.5213 23 6 4.0418 -0.2468 -5.5363 24 6 3.1809 -1.1234 -0.9063 25 1 -1.0500 0.0002 0.0001 26 1 2.8369 0.5228 1.9473 27 1 2.4281 2.0947 -0.5818 28 1 4.0959 1.6301 -0.1162 29 1 4.2305 1.5595 -2.5242 30 1 2.5632 0.9169 -2.6799 31 1 3.7499 -5.6706 -3.6048 32 1 6.3617 -0.1342 -3.0901 33 1 7.5828 1.0834 -4.8478 34 1 6.5328 1.4565 -7.0436 35 1 4.2647 0.6053 -7.4842 36 1 3.0473 -0.6205 -5.7297 37 1 2.3491 -1.6619 -1.3605 38 1 3.7966 -1.8088 -0.3238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708152989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:00 Heat of formation + Delta-G solvation = 47.299593 kcal Electronic energy + Delta-G solvation = -20909.148826 eV Core-core repulsion = 17911.349078 eV Total energy + Delta-G solvation = -2997.799747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.48582 -38.29920 -35.87484 -33.34626 -32.52178 -31.42642 -30.20143 -29.39523 -27.78664 -26.58000 -23.07342 -21.93970 -21.46191 -21.15957 -19.48489 -18.79772 -17.09590 -16.45064 -16.21698 -15.47590 -14.81234 -14.48672 -14.20195 -13.97182 -13.94611 -13.12989 -13.07803 -12.72527 -12.53957 -12.24311 -12.03936 -11.77389 -11.47808 -11.32245 -10.97689 -10.93962 -10.79587 -10.53420 -10.43488 -10.36932 -10.07053 -9.87841 -9.73253 -9.52511 -8.71038 -8.23339 -7.87729 -7.48458 -6.22151 -4.20618 2.08151 2.13022 2.76914 2.83312 3.15717 3.21658 3.25333 4.19141 4.25828 4.44544 4.50458 4.83355 4.96341 5.06361 5.20664 5.51431 5.54520 5.60188 5.70624 5.78721 5.89348 5.94967 6.02017 6.18639 6.22575 6.22871 6.31935 6.37235 6.53917 6.64648 6.74856 6.78839 7.09863 7.15072 7.32646 7.45023 7.60734 7.72735 7.74496 7.82774 7.89999 8.47786 8.91206 9.39383 10.90202 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.008621 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.539688 B = 3247.266226 C = 4357.353593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.201 4.201 3 C 0.225 3.775 4 O -0.537 6.537 5 C -0.140 4.140 6 C 0.030 3.970 7 N -0.497 5.497 8 C 0.204 3.796 9 H 0.019 0.981 10 C -0.491 4.491 11 H 0.086 0.914 12 C 0.079 3.921 13 N -0.883 5.883 14 Si 0.863 3.137 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.266 1.266 18 C -0.030 4.030 19 C -0.094 4.094 20 C -0.128 4.128 21 C -0.147 4.147 22 C -0.124 4.124 23 C -0.134 4.134 24 C 0.072 3.928 25 H 0.218 0.782 26 H 0.372 0.628 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.267 0.733 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 12.869 2.213 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 C 0.183 3.817 4 O -0.342 6.342 5 C -0.178 4.178 6 C -0.098 4.098 7 N -0.222 5.222 8 C 0.098 3.902 9 H 0.036 0.964 10 C -0.529 4.529 11 H 0.104 0.896 12 C -0.125 4.125 13 N -0.520 5.520 14 Si 0.690 3.310 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.031 4.031 19 C -0.113 4.113 20 C -0.146 4.146 21 C -0.165 4.165 22 C -0.142 4.142 23 C -0.152 4.152 24 C -0.056 4.056 25 H 0.235 0.765 26 H 0.219 0.781 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.122 12.102 2.046 12.664 hybrid contribution -2.477 0.294 -0.411 2.528 sum -5.599 12.396 1.635 13.699 Atomic orbital electron populations 1.24940 0.95858 1.01193 0.99155 1.23940 0.95039 1.00018 1.01181 1.19065 0.81278 0.97225 0.84088 1.86718 1.73310 1.54981 1.19170 1.23177 1.01358 0.95702 0.97537 1.23185 0.98480 0.93733 0.94448 1.65194 1.49180 1.00009 1.07853 1.19015 0.93798 0.93221 0.84206 0.96362 1.20766 1.01890 0.86233 1.44010 0.89614 1.25047 0.97708 0.95316 0.94433 1.69874 1.36250 0.98417 1.47436 0.87116 0.86655 0.77712 0.79475 1.19832 1.21042 1.19144 1.20257 0.95096 0.92590 0.95183 1.20994 0.94247 0.96829 0.99204 1.21080 0.99297 1.00324 0.93902 1.20873 0.95827 1.02639 0.97175 1.20911 0.95319 0.99593 0.98416 1.20964 0.99943 1.00292 0.94035 1.22553 0.96836 0.94063 0.92135 0.76549 0.78099 0.91408 0.89076 0.89985 0.94692 0.92298 0.85594 0.87115 0.87376 0.87280 0.87470 0.92612 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 19.25 29.55 0.57 -2.16 16 2 C -0.20 -3.27 11.82 -37.13 -0.44 -3.71 16 3 C 0.22 3.77 1.29 -92.05 -0.12 3.65 16 4 O -0.54 -8.33 12.92 -35.23 -0.46 -8.79 16 5 C -0.14 -2.05 6.33 -24.87 -0.16 -2.21 16 6 C 0.03 0.51 5.64 -1.90 -0.01 0.50 16 7 N -0.50 -10.28 4.61 -225.28 -1.04 -11.31 16 8 C 0.20 4.69 1.35 -70.02 -0.09 4.59 16 9 H 0.02 0.45 4.28 -51.93 -0.22 0.23 16 10 C -0.49 -13.28 8.33 -34.44 -0.29 -13.56 16 11 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.88 -26.19 13.96 55.43 0.77 -25.42 16 14 Si 0.86 20.99 26.49 -169.99 -4.50 16.49 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.27 5.62 56.52 0.32 -5.95 16 18 C -0.03 -0.64 3.91 -104.62 -0.41 -1.05 16 19 C -0.09 -1.85 8.63 -39.58 -0.34 -2.19 16 20 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 21 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 22 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 23 C -0.13 -2.64 9.67 -39.58 -0.38 -3.02 16 24 C 0.07 1.49 5.47 -2.75 -0.02 1.48 16 25 H 0.22 2.13 7.80 -54.09 -0.42 1.71 16 26 H 0.37 3.95 9.06 45.56 0.41 4.36 16 27 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 28 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 29 H 0.08 1.35 7.48 -51.93 -0.39 0.97 16 30 H 0.03 0.63 8.02 -51.93 -0.42 0.21 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.13 2.51 7.91 -52.49 -0.42 2.09 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.11 2.08 7.99 -52.49 -0.42 1.66 16 37 H 0.06 1.27 5.50 -51.93 -0.29 0.98 16 38 H 0.10 2.21 7.96 -51.93 -0.41 1.80 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -30.66 317.57 -7.72 -38.38 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -4.31 Total: 9.28 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -2.98 Total: -23.41 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.26 Total: -36.73 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.46 Total: -8.79 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.50 Total: 16.49 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.66 -7.72 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708152989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.682 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds