Wall clock time and date at job start Mon Mar 30 2020 05:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42900 * 110.27642 * 276.78427 * 3 2 1 5 5 C 1.54597 * 110.39132 * 154.63970 * 3 2 1 6 6 C 1.54940 * 102.92147 * 262.99461 * 5 3 2 7 7 N 1.48532 * 103.22816 * 322.58749 * 6 5 3 8 8 C 1.46897 * 111.00036 * 159.71846 * 7 6 5 9 9 H 1.08998 * 109.47228 * 297.60256 * 8 7 6 10 10 C 1.50695 * 109.47280 * 177.60266 * 8 7 6 11 11 H 1.08004 * 120.00266 * 305.06310 * 10 8 7 12 12 C 1.37884 * 120.00269 * 125.05906 * 10 8 7 13 13 N 1.31514 * 119.99919 * 173.01690 * 12 10 8 14 14 Si 1.86800 * 119.99497 * 353.01330 * 12 10 8 15 15 H 1.48500 * 109.46933 * 85.64176 * 14 12 10 16 16 H 1.48502 * 109.46791 * 205.63944 * 14 12 10 17 17 H 1.48497 * 109.47567 * 325.63631 * 14 12 10 18 18 C 1.50698 * 109.47227 * 57.60343 * 8 7 6 19 19 C 1.38237 * 119.99849 * 46.10363 * 18 8 7 20 20 C 1.38240 * 119.99710 * 179.76563 * 19 18 8 21 21 C 1.38230 * 119.99991 * 0.49069 * 20 19 18 22 22 C 1.38239 * 120.00254 * 359.78625 * 21 20 19 23 23 C 1.38236 * 119.99947 * 226.38416 * 18 8 7 24 24 C 1.47907 * 105.81845 * 39.20490 * 7 6 5 25 25 H 4.40029 * 5.37405 * 179.97438 * 4 1 2 26 26 H 0.96702 * 113.99807 * 302.09061 * 4 3 2 27 27 H 1.09000 * 110.72488 * 21.35332 * 5 3 2 28 28 H 1.09004 * 110.72501 * 144.46198 * 5 3 2 29 29 H 1.08997 * 110.66806 * 204.14779 * 6 5 3 30 30 H 1.09002 * 110.66383 * 81.02164 * 6 5 3 31 31 H 0.97001 * 119.99315 * 180.02562 * 13 12 10 32 32 H 1.07997 * 120.00352 * 0.02562 * 19 18 8 33 33 H 1.08000 * 119.99846 * 180.25849 * 20 19 18 34 34 H 1.08007 * 120.00209 * 179.76942 * 21 20 19 35 35 H 1.08001 * 120.00027 * 179.97438 * 22 21 20 36 36 H 1.07991 * 120.00304 * 359.97438 * 23 18 8 37 37 H 1.08996 * 109.91644 * 94.02664 * 24 7 6 38 38 H 1.09004 * 109.91448 * 215.31824 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1412 -0.1575 1.3311 5 6 3.1840 1.3103 -0.6207 6 6 3.4775 0.9040 -2.0867 7 7 3.9991 -0.4808 -1.9576 8 6 3.8862 -1.2065 -3.2298 9 1 2.8357 -1.2910 -3.5080 10 6 4.4776 -2.5841 -3.0764 11 1 5.4915 -2.7003 -2.7230 12 6 3.7242 -3.6963 -3.3872 13 7 4.2799 -4.8883 -3.3859 14 14 1.9142 -3.5099 -3.8099 15 1 1.7727 -3.2026 -5.2558 16 1 1.2009 -4.7751 -3.5006 17 1 1.3301 -2.4040 -3.0093 18 6 4.6315 -0.4567 -4.3038 19 6 5.9026 0.0262 -4.0544 20 6 6.5881 0.7097 -5.0412 21 6 5.9987 0.9192 -6.2738 22 6 4.7253 0.4413 -6.5213 23 6 4.0418 -0.2468 -5.5363 24 6 3.1809 -1.1234 -0.9063 25 1 -1.0500 0.0002 0.0001 26 1 2.8369 0.5228 1.9473 27 1 2.4281 2.0947 -0.5818 28 1 4.0959 1.6301 -0.1162 29 1 4.2305 1.5595 -2.5242 30 1 2.5632 0.9169 -2.6799 31 1 3.7499 -5.6706 -3.6048 32 1 6.3617 -0.1342 -3.0901 33 1 7.5828 1.0834 -4.8478 34 1 6.5328 1.4565 -7.0436 35 1 4.2647 0.6053 -7.4842 36 1 3.0473 -0.6205 -5.7297 37 1 2.3491 -1.6619 -1.3605 38 1 3.7966 -1.8088 -0.3238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708152989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:00 Heat of formation + Delta-G solvation = 25.312880 kcal Electronic energy + Delta-G solvation = -20910.102241 eV Core-core repulsion = 17911.349078 eV Total energy + Delta-G solvation = -2998.753163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95333 -39.67958 -37.30476 -35.06929 -33.95374 -33.01309 -31.61313 -30.83587 -29.21668 -28.40517 -24.77892 -23.37376 -22.79778 -22.59390 -21.13735 -20.02827 -19.14201 -17.73281 -17.59914 -16.95040 -16.44716 -16.11096 -15.58606 -15.36439 -15.24647 -14.94425 -14.72244 -14.33585 -14.05132 -13.75546 -13.60642 -13.23521 -13.03606 -12.92786 -12.59271 -12.42283 -12.21265 -11.99191 -11.83101 -11.76180 -11.64058 -11.56624 -11.40983 -10.97183 -10.83503 -9.64973 -9.37380 -9.16115 -8.38366 -6.39910 0.64953 0.70251 1.19350 1.21142 1.28644 1.63050 1.66778 2.20330 2.80522 3.05633 3.15984 3.23885 3.44736 3.68780 3.73123 4.14111 4.23352 4.29512 4.34195 4.43132 4.47875 4.56119 4.70509 4.78209 4.83379 4.83437 4.91994 4.95169 5.02658 5.11818 5.22544 5.33964 5.43526 5.71834 5.76257 5.92440 6.03740 6.10870 6.32600 6.48556 6.54281 6.67520 6.75778 7.23705 8.78556 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.008621 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.539688 B = 3247.266226 C = 4357.353593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.256 4.256 3 C 0.233 3.767 4 O -0.552 6.552 5 C -0.125 4.125 6 C 0.032 3.968 7 N -0.507 5.507 8 C 0.213 3.787 9 H 0.008 0.992 10 C -0.487 4.487 11 H 0.038 0.962 12 C 0.025 3.975 13 N -0.935 5.935 14 Si 0.921 3.079 15 H -0.260 1.260 16 H -0.282 1.282 17 H -0.257 1.257 18 C -0.059 4.059 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.153 4.153 24 C 0.069 3.931 25 H 0.257 0.743 26 H 0.395 0.605 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.268 0.732 32 H 0.109 0.891 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.030 0.970 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 16.118 1.101 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.256 4.256 3 C 0.191 3.809 4 O -0.360 6.360 5 C -0.163 4.163 6 C -0.095 4.095 7 N -0.231 5.231 8 C 0.106 3.894 9 H 0.026 0.974 10 C -0.526 4.526 11 H 0.057 0.943 12 C -0.174 4.174 13 N -0.575 5.575 14 Si 0.746 3.254 15 H -0.185 1.185 16 H -0.208 1.208 17 H -0.182 1.182 18 C -0.060 4.060 19 C -0.129 4.129 20 C -0.142 4.142 21 C -0.153 4.153 22 C -0.138 4.138 23 C -0.171 4.171 24 C -0.059 4.059 25 H 0.273 0.727 26 H 0.245 0.755 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.122 0.878 37 H 0.049 0.951 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.440 15.393 0.951 16.049 hybrid contribution -1.969 -0.629 -0.045 2.068 sum -6.409 14.764 0.906 16.121 Atomic orbital electron populations 1.25889 0.96678 0.98436 0.96592 1.24013 0.95442 1.02550 1.03619 1.18690 0.82147 0.96086 0.83935 1.86652 1.73651 1.56434 1.19219 1.23135 1.02668 0.95343 0.95130 1.23220 0.98320 0.91482 0.96510 1.64961 1.49810 1.01648 1.06715 1.18768 0.92987 0.91733 0.85897 0.97441 1.20860 0.99864 0.88980 1.42859 0.94320 1.25764 1.01980 0.94865 0.94773 1.70015 1.37997 0.99311 1.50135 0.86161 0.81501 0.77825 0.79885 1.18468 1.20809 1.18223 1.20138 0.95940 0.94611 0.95283 1.20967 0.94101 0.98188 0.99676 1.21416 1.00308 0.98938 0.93520 1.21358 0.95350 1.01194 0.97430 1.21294 0.95607 0.98023 0.98898 1.21106 1.00361 1.01446 0.94217 1.22429 0.95344 0.95379 0.92771 0.72669 0.75484 0.88506 0.87910 0.89095 0.95140 0.92307 0.87252 0.84125 0.83274 0.84003 0.87828 0.95132 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 19.25 74.32 1.43 -2.56 16 2 C -0.26 -7.91 11.82 31.12 0.37 -7.55 16 3 C 0.23 7.73 1.29 -11.72 -0.02 7.72 16 4 O -0.55 -16.91 12.92 -148.98 -1.92 -18.84 16 5 C -0.12 -3.46 6.33 31.80 0.20 -3.26 16 6 C 0.03 1.10 5.64 86.65 0.49 1.59 16 7 N -0.51 -21.72 4.61 -866.66 -3.99 -25.72 16 8 C 0.21 10.19 1.35 43.42 0.06 10.25 16 9 H 0.01 0.39 4.28 -2.39 -0.01 0.38 16 10 C -0.49 -28.12 8.33 25.60 0.21 -27.90 16 11 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 12 C 0.03 1.49 5.47 84.66 0.46 1.95 16 13 N -0.94 -58.66 13.96 21.45 0.30 -58.36 16 14 Si 0.92 44.85 26.49 68.60 1.82 46.67 16 15 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 16 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 17 H -0.26 -12.03 5.62 99.48 0.56 -11.47 16 18 C -0.06 -2.52 3.91 -19.87 -0.08 -2.60 16 19 C -0.11 -4.35 8.63 22.27 0.19 -4.16 16 20 C -0.12 -3.88 10.05 22.27 0.22 -3.66 16 21 C -0.14 -3.80 10.05 22.27 0.22 -3.58 16 22 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 23 C -0.15 -5.88 9.67 22.27 0.22 -5.66 16 24 C 0.07 3.00 5.47 86.44 0.47 3.47 16 25 H 0.26 3.86 7.80 -4.42 -0.03 3.82 16 26 H 0.39 7.77 9.06 -74.06 -0.67 7.10 16 27 H 0.10 2.16 7.84 -2.39 -0.02 2.14 16 28 H 0.10 2.60 8.08 -2.39 -0.02 2.58 16 29 H 0.09 2.91 7.48 -2.39 -0.02 2.89 16 30 H 0.03 1.06 8.02 -2.39 -0.02 1.05 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.11 4.54 7.91 -2.91 -0.02 4.52 16 33 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 35 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 36 H 0.10 3.96 7.99 -2.91 -0.02 3.94 16 37 H 0.03 1.45 5.50 -2.39 -0.01 1.44 16 38 H 0.07 3.20 7.96 -2.38 -0.02 3.18 16 Total: -1.00 -71.95 317.57 1.12 -70.83 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.24 Total: 24.83 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 4.68 Total: -39.42 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -3.69 Total: -84.07 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -1.92 Total: -18.84 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.82 Total: 46.67 kcal Total: -71.95 1.12 -70.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708152989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.147 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds