Wall clock time and date at job start Mon Mar 30 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42899 * 110.90624 * 157.55477 * 3 2 1 5 5 C 1.55142 * 110.99220 * 281.42437 * 3 2 1 6 6 C 1.54315 * 103.01972 * 82.43565 * 5 3 2 7 7 N 1.47442 * 107.23339 * 22.28991 * 6 5 3 8 8 C 1.46898 * 111.00242 * 123.25765 * 7 6 5 9 9 H 1.09005 * 109.47287 * 299.86965 * 8 7 6 10 10 C 1.50698 * 109.47135 * 179.87067 * 8 7 6 11 11 H 1.08001 * 120.00218 * 305.23100 * 10 8 7 12 12 C 1.37882 * 119.99960 * 125.23219 * 10 8 7 13 13 N 1.31516 * 119.99953 * 185.60717 * 12 10 8 14 14 Si 1.86797 * 119.99824 * 5.88504 * 12 10 8 15 15 H 1.48495 * 109.47308 * 273.80345 * 14 12 10 16 16 H 1.48507 * 109.47327 * 33.80592 * 14 12 10 17 17 H 1.48503 * 109.47054 * 153.80095 * 14 12 10 18 18 C 1.50706 * 109.47337 * 59.86916 * 8 7 6 19 19 C 1.38236 * 119.99856 * 45.67936 * 18 8 7 20 20 C 1.38234 * 119.99522 * 179.76623 * 19 18 8 21 21 C 1.38231 * 120.00271 * 0.48660 * 20 19 18 22 22 C 1.38233 * 119.99907 * 359.78868 * 21 20 19 23 23 C 1.38235 * 119.99754 * 225.95207 * 18 8 7 24 24 C 1.47844 * 108.56674 * 0.98462 * 7 6 5 25 25 H 4.41265 * 5.31867 * 180.02562 * 4 1 2 26 26 H 0.96700 * 113.99936 * 62.40841 * 4 3 2 27 27 H 1.09000 * 110.70453 * 324.05298 * 5 3 2 28 28 H 1.09002 * 110.85691 * 200.89111 * 5 3 2 29 29 H 1.08997 * 109.88822 * 262.87575 * 6 5 3 30 30 H 1.09002 * 110.02164 * 141.76755 * 6 5 3 31 31 H 0.97000 * 119.99851 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.00000 * 0.02562 * 19 18 8 33 33 H 1.08005 * 119.99190 * 180.25546 * 20 19 18 34 34 H 1.08002 * 119.99825 * 179.77141 * 21 20 19 35 35 H 1.07999 * 119.99942 * 179.97438 * 22 21 20 36 36 H 1.07994 * 120.00211 * 0.02562 * 23 18 8 37 37 H 1.08995 * 110.37128 * 94.74128 * 24 7 6 38 38 H 1.09007 * 110.37277 * 217.07546 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1553 1.2347 -0.5097 5 6 3.2019 -0.2860 1.4198 6 6 3.1423 -1.8252 1.5122 7 7 3.1290 -2.3455 0.1327 8 6 4.2419 -3.2784 -0.0890 9 1 5.1874 -2.7625 0.0788 10 6 4.1936 -3.7904 -1.5055 11 1 3.2944 -4.2563 -1.8810 12 6 5.2973 -3.6642 -2.3222 13 7 5.2209 -4.0096 -3.5889 14 14 6.9032 -3.0101 -1.6275 15 1 6.8996 -1.5263 -1.6853 16 1 7.0481 -3.4503 -0.2166 17 1 8.0388 -3.5339 -2.4285 18 6 4.1248 -4.4366 0.8681 19 6 2.9042 -5.0581 1.0551 20 6 2.7980 -6.1235 1.9293 21 6 3.9099 -6.5610 2.6243 22 6 5.1292 -5.9358 2.4416 23 6 5.2367 -4.8738 1.5634 24 6 3.2015 -1.2025 -0.8022 25 1 -1.0502 -0.0003 0.0003 26 1 2.9131 2.0080 0.0179 27 1 2.5691 0.1706 2.1808 28 1 4.2292 0.0662 1.5127 29 1 2.2346 -2.1306 2.0326 30 1 4.0176 -2.2014 2.0419 31 1 5.9975 -3.9211 -4.1633 32 1 2.0347 -4.7139 0.5149 33 1 1.8452 -6.6117 2.0722 34 1 3.8260 -7.3911 3.3101 35 1 5.9979 -6.2774 2.9848 36 1 6.1892 -4.3851 1.4209 37 1 4.2346 -1.0179 -1.0965 38 1 2.5838 -1.3907 -1.6804 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708152991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:06 Heat of formation + Delta-G solvation = 47.426603 kcal Electronic energy + Delta-G solvation = -20926.798716 eV Core-core repulsion = 17929.004476 eV Total energy + Delta-G solvation = -2997.794240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49404 -38.27439 -35.90693 -33.36244 -32.35883 -31.38318 -30.19870 -29.33341 -27.80582 -26.57542 -23.00314 -21.96768 -21.63217 -21.10457 -19.48909 -18.58294 -17.05813 -16.52811 -15.98915 -15.41986 -14.89270 -14.68167 -14.25113 -13.93922 -13.74152 -13.27640 -12.84890 -12.76956 -12.61978 -12.38864 -11.99969 -11.76072 -11.53636 -11.09118 -11.06877 -10.91747 -10.80858 -10.46988 -10.40190 -10.24300 -9.93636 -9.92842 -9.65328 -9.49243 -8.70516 -8.22633 -7.87034 -7.41879 -6.21653 -4.20812 2.08844 2.13881 2.92333 2.99127 3.18675 3.24875 3.28087 4.23964 4.27613 4.40689 4.54492 4.82062 4.95045 5.14327 5.27355 5.45250 5.51887 5.58838 5.70777 5.81906 5.96151 5.98651 5.99457 6.13184 6.24510 6.26365 6.37992 6.44965 6.53635 6.67574 6.79886 6.80571 7.12088 7.16564 7.31822 7.47429 7.67900 7.75164 7.78986 7.89538 7.94944 8.48661 8.90761 9.39748 10.90341 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.008786 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.105715 B = 3186.072241 C = 4395.463797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.182 4.182 3 C 0.220 3.780 4 O -0.540 6.540 5 C -0.161 4.161 6 C 0.040 3.960 7 N -0.512 5.512 8 C 0.210 3.790 9 H 0.018 0.982 10 C -0.494 4.494 11 H 0.084 0.916 12 C 0.079 3.921 13 N -0.883 5.883 14 Si 0.864 3.136 15 H -0.273 1.273 16 H -0.262 1.262 17 H -0.285 1.285 18 C -0.031 4.031 19 C -0.093 4.093 20 C -0.129 4.129 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.136 4.136 24 C 0.091 3.909 25 H 0.216 0.784 26 H 0.374 0.626 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.267 0.733 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 5.146 11.570 13.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.183 4.183 3 C 0.178 3.822 4 O -0.345 6.345 5 C -0.200 4.200 6 C -0.088 4.088 7 N -0.238 5.238 8 C 0.104 3.896 9 H 0.035 0.965 10 C -0.532 4.532 11 H 0.102 0.898 12 C -0.126 4.126 13 N -0.520 5.520 14 Si 0.692 3.308 15 H -0.199 1.199 16 H -0.187 1.187 17 H -0.211 1.211 18 C -0.032 4.032 19 C -0.112 4.112 20 C -0.147 4.147 21 C -0.166 4.166 22 C -0.143 4.143 23 C -0.155 4.155 24 C -0.037 4.037 25 H 0.233 0.767 26 H 0.221 0.779 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.187 4.446 10.825 12.429 hybrid contribution 1.289 0.986 0.784 1.803 sum -2.898 5.432 11.609 13.141 Atomic orbital electron populations 1.24829 0.95710 0.99657 1.00943 1.23306 0.94318 1.00661 0.99996 1.19206 0.82482 0.86216 0.94288 1.86646 1.76473 1.15882 1.55471 1.23437 1.01565 0.98852 0.96124 1.22745 1.01311 0.91286 0.93431 1.63950 1.46568 1.13126 1.00123 1.18977 0.87969 0.87698 0.94970 0.96481 1.20762 1.01221 1.39017 0.92214 0.89769 1.25058 0.98380 0.94577 0.94568 1.69873 1.30552 1.46952 1.04587 0.87084 0.84269 0.79756 0.79739 1.19872 1.18747 1.21102 1.20289 0.92563 0.97897 0.92417 1.20980 0.98118 0.94873 0.97194 1.21074 0.97923 0.97635 0.98055 1.20866 0.93438 1.00729 1.01523 1.20916 0.97105 0.96927 0.99402 1.21082 0.98527 0.98306 0.97544 1.22530 1.00690 0.84942 0.95499 0.76687 0.77873 0.90965 0.90147 0.91273 0.92795 0.92288 0.85729 0.87202 0.87424 0.87329 0.87091 0.92112 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 19.25 29.55 0.57 -2.14 16 2 C -0.18 -2.95 12.08 -37.13 -0.45 -3.39 16 3 C 0.22 3.68 1.31 -91.27 -0.12 3.56 16 4 O -0.54 -8.47 13.15 -35.23 -0.46 -8.93 16 5 C -0.16 -2.40 6.15 -24.91 -0.15 -2.55 16 6 C 0.04 0.70 5.99 -2.84 -0.02 0.68 16 7 N -0.51 -10.48 4.48 -226.07 -1.01 -11.50 16 8 C 0.21 4.78 1.19 -70.02 -0.08 4.69 16 9 H 0.02 0.41 4.59 -51.93 -0.24 0.17 16 10 C -0.49 -13.26 8.11 -34.44 -0.28 -13.54 16 11 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 12 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 13 N -0.88 -26.04 13.96 55.43 0.77 -25.26 16 14 Si 0.86 20.77 26.95 -169.99 -4.58 16.19 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.26 -5.97 5.55 56.52 0.31 -5.65 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 18 C -0.03 -0.65 3.62 -104.62 -0.38 -1.03 16 19 C -0.09 -1.84 9.12 -39.58 -0.36 -2.20 16 20 C -0.13 -2.20 10.05 -39.59 -0.40 -2.60 16 21 C -0.15 -2.39 10.05 -39.59 -0.40 -2.78 16 22 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 23 C -0.14 -2.69 9.67 -39.58 -0.38 -3.07 16 24 C 0.09 1.89 5.01 -2.30 -0.01 1.87 16 25 H 0.22 2.11 7.80 -54.08 -0.42 1.69 16 26 H 0.37 3.98 9.10 45.56 0.41 4.40 16 27 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.94 7.04 -51.93 -0.37 0.57 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.12 2.51 7.90 -52.49 -0.41 2.10 16 33 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.11 2.19 6.76 -52.49 -0.35 1.83 16 37 H 0.06 1.37 7.77 -51.93 -0.40 0.97 16 38 H 0.09 2.00 8.04 -51.93 -0.42 1.58 16 LS Contribution 319.26 15.07 4.81 4.81 Total: -1.00 -30.30 319.26 -7.81 -38.11 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.38 Total: 9.54 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.96 Total: -22.96 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.24 Total: -36.76 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.46 Total: -8.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.58 Total: 16.19 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.30 -7.81 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708152991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.536 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds