Wall clock time and date at job start Mon Mar 30 2020 05:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42899 * 110.90624 * 157.55477 * 3 2 1 5 5 C 1.55142 * 110.99220 * 281.42437 * 3 2 1 6 6 C 1.54315 * 103.01972 * 82.43565 * 5 3 2 7 7 N 1.47442 * 107.23339 * 22.28991 * 6 5 3 8 8 C 1.46898 * 111.00242 * 123.25765 * 7 6 5 9 9 H 1.09005 * 109.47287 * 299.86965 * 8 7 6 10 10 C 1.50698 * 109.47135 * 179.87067 * 8 7 6 11 11 H 1.08001 * 120.00218 * 305.23100 * 10 8 7 12 12 C 1.37882 * 119.99960 * 125.23219 * 10 8 7 13 13 N 1.31516 * 119.99953 * 185.60717 * 12 10 8 14 14 Si 1.86797 * 119.99824 * 5.88504 * 12 10 8 15 15 H 1.48495 * 109.47308 * 273.80345 * 14 12 10 16 16 H 1.48507 * 109.47327 * 33.80592 * 14 12 10 17 17 H 1.48503 * 109.47054 * 153.80095 * 14 12 10 18 18 C 1.50706 * 109.47337 * 59.86916 * 8 7 6 19 19 C 1.38236 * 119.99856 * 45.67936 * 18 8 7 20 20 C 1.38234 * 119.99522 * 179.76623 * 19 18 8 21 21 C 1.38231 * 120.00271 * 0.48660 * 20 19 18 22 22 C 1.38233 * 119.99907 * 359.78868 * 21 20 19 23 23 C 1.38235 * 119.99754 * 225.95207 * 18 8 7 24 24 C 1.47844 * 108.56674 * 0.98462 * 7 6 5 25 25 H 4.41265 * 5.31867 * 180.02562 * 4 1 2 26 26 H 0.96700 * 113.99936 * 62.40841 * 4 3 2 27 27 H 1.09000 * 110.70453 * 324.05298 * 5 3 2 28 28 H 1.09002 * 110.85691 * 200.89111 * 5 3 2 29 29 H 1.08997 * 109.88822 * 262.87575 * 6 5 3 30 30 H 1.09002 * 110.02164 * 141.76755 * 6 5 3 31 31 H 0.97000 * 119.99851 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.00000 * 0.02562 * 19 18 8 33 33 H 1.08005 * 119.99190 * 180.25546 * 20 19 18 34 34 H 1.08002 * 119.99825 * 179.77141 * 21 20 19 35 35 H 1.07999 * 119.99942 * 179.97438 * 22 21 20 36 36 H 1.07994 * 120.00211 * 0.02562 * 23 18 8 37 37 H 1.08995 * 110.37128 * 94.74128 * 24 7 6 38 38 H 1.09007 * 110.37277 * 217.07546 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1553 1.2347 -0.5097 5 6 3.2019 -0.2860 1.4198 6 6 3.1423 -1.8252 1.5122 7 7 3.1290 -2.3455 0.1327 8 6 4.2419 -3.2784 -0.0890 9 1 5.1874 -2.7625 0.0788 10 6 4.1936 -3.7904 -1.5055 11 1 3.2944 -4.2563 -1.8810 12 6 5.2973 -3.6642 -2.3222 13 7 5.2209 -4.0096 -3.5889 14 14 6.9032 -3.0101 -1.6275 15 1 6.8996 -1.5263 -1.6853 16 1 7.0481 -3.4503 -0.2166 17 1 8.0388 -3.5339 -2.4285 18 6 4.1248 -4.4366 0.8681 19 6 2.9042 -5.0581 1.0551 20 6 2.7980 -6.1235 1.9293 21 6 3.9099 -6.5610 2.6243 22 6 5.1292 -5.9358 2.4416 23 6 5.2367 -4.8738 1.5634 24 6 3.2015 -1.2025 -0.8022 25 1 -1.0502 -0.0003 0.0003 26 1 2.9131 2.0080 0.0179 27 1 2.5691 0.1706 2.1808 28 1 4.2292 0.0662 1.5127 29 1 2.2346 -2.1306 2.0326 30 1 4.0176 -2.2014 2.0419 31 1 5.9975 -3.9211 -4.1633 32 1 2.0347 -4.7139 0.5149 33 1 1.8452 -6.6117 2.0722 34 1 3.8260 -7.3911 3.3101 35 1 5.9979 -6.2774 2.9848 36 1 6.1892 -4.3851 1.4209 37 1 4.2346 -1.0179 -1.0965 38 1 2.5838 -1.3907 -1.6804 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708152991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:05 Heat of formation + Delta-G solvation = 25.937137 kcal Electronic energy + Delta-G solvation = -20927.730569 eV Core-core repulsion = 17929.004476 eV Total energy + Delta-G solvation = -2998.726093 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96803 -39.65889 -37.32452 -35.08868 -33.85177 -32.91125 -31.61392 -30.77980 -29.24726 -28.39683 -24.70167 -23.40159 -22.98346 -22.56080 -21.05174 -19.90205 -19.07185 -17.84516 -17.39886 -16.77940 -16.60717 -16.11638 -15.79564 -15.32885 -15.12318 -14.90215 -14.57150 -14.25928 -14.22258 -13.92353 -13.59862 -13.26992 -12.99856 -12.83226 -12.58501 -12.42330 -12.24639 -11.95078 -11.79849 -11.68439 -11.58107 -11.44248 -11.38603 -10.91042 -10.78343 -9.64484 -9.37078 -9.07382 -8.36337 -6.38797 0.65458 0.71112 1.25076 1.25780 1.34621 1.76410 1.80488 2.24381 2.78596 3.05711 3.15971 3.25890 3.53110 3.61936 3.85420 4.16616 4.22430 4.27116 4.35636 4.44442 4.49717 4.60506 4.66930 4.75053 4.79362 4.84825 4.93604 4.95448 5.12656 5.18719 5.22691 5.34557 5.43067 5.72950 5.76938 5.95616 6.06486 6.18229 6.34052 6.56362 6.65904 6.68784 6.72700 7.25564 8.80053 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.008786 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.105715 B = 3186.072241 C = 4395.463797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.236 4.236 3 C 0.230 3.770 4 O -0.555 6.555 5 C -0.148 4.148 6 C 0.042 3.958 7 N -0.519 5.519 8 C 0.219 3.781 9 H 0.010 0.990 10 C -0.489 4.489 11 H 0.035 0.965 12 C 0.023 3.977 13 N -0.936 5.936 14 Si 0.921 3.079 15 H -0.270 1.270 16 H -0.240 1.240 17 H -0.283 1.283 18 C -0.057 4.057 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.121 4.121 23 C -0.153 4.153 24 C 0.088 3.912 25 H 0.255 0.745 26 H 0.397 0.603 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.267 0.733 32 H 0.106 0.894 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.107 0.893 37 H 0.032 0.968 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 5.176 15.269 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.236 4.236 3 C 0.188 3.812 4 O -0.363 6.363 5 C -0.186 4.186 6 C -0.086 4.086 7 N -0.244 5.244 8 C 0.112 3.888 9 H 0.027 0.973 10 C -0.527 4.527 11 H 0.054 0.946 12 C -0.176 4.176 13 N -0.575 5.575 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.164 1.164 17 H -0.209 1.209 18 C -0.058 4.058 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.154 4.154 22 C -0.139 4.139 23 C -0.172 4.172 24 C -0.040 4.040 25 H 0.271 0.729 26 H 0.248 0.752 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.125 0.875 37 H 0.051 0.949 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.508 4.494 14.565 15.896 hybrid contribution 1.189 0.923 -0.323 1.539 sum -3.319 5.417 14.243 15.596 Atomic orbital electron populations 1.25766 0.96540 0.97086 0.98344 1.23413 0.94738 1.03069 1.02420 1.18818 0.83241 0.85036 0.94058 1.86579 1.76716 1.16508 1.56489 1.23383 1.02614 0.96931 0.95713 1.22774 1.01692 0.93067 0.91021 1.63698 1.45385 1.13234 1.02120 1.18746 0.88250 0.88774 0.93005 0.97293 1.20839 0.99222 1.37919 0.94759 0.94637 1.25811 1.01903 0.95188 0.94675 1.70021 1.31582 1.49783 1.06135 0.86156 0.79915 0.79166 0.80197 1.19573 1.16355 1.20878 1.20160 0.94010 0.97877 0.93793 1.20941 0.97113 0.96393 0.98439 1.21403 0.99868 0.96359 0.96711 1.21344 0.92356 1.00849 1.00835 1.21300 0.98844 0.95490 0.98241 1.21192 0.97723 0.99640 0.98626 1.22359 0.98576 0.87607 0.95493 0.72899 0.75191 0.87737 0.89482 0.90336 0.92834 0.92364 0.87553 0.84317 0.83354 0.84007 0.87510 0.94926 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 19.25 74.32 1.43 -2.67 16 2 C -0.24 -7.38 12.08 31.12 0.38 -7.00 16 3 C 0.23 7.68 1.31 -11.21 -0.01 7.66 16 4 O -0.55 -17.13 13.15 -148.98 -1.96 -19.09 16 5 C -0.15 -4.15 6.15 31.77 0.20 -3.96 16 6 C 0.04 1.42 5.99 86.65 0.52 1.93 16 7 N -0.52 -22.02 4.48 -869.16 -3.89 -25.91 16 8 C 0.22 10.33 1.19 43.42 0.05 10.38 16 9 H 0.01 0.45 4.59 -2.38 -0.01 0.44 16 10 C -0.49 -28.00 8.11 25.60 0.21 -27.80 16 11 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 12 C 0.02 1.37 5.47 84.66 0.46 1.83 16 13 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 14 Si 0.92 44.28 26.95 68.60 1.85 46.13 16 15 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 16 H -0.24 -10.54 5.55 99.48 0.55 -9.98 16 17 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 18 C -0.06 -2.44 3.62 -19.86 -0.07 -2.51 16 19 C -0.11 -4.34 9.12 22.27 0.20 -4.14 16 20 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 21 C -0.14 -3.81 10.05 22.27 0.22 -3.59 16 22 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 23 C -0.15 -5.84 9.67 22.27 0.22 -5.62 16 24 C 0.09 3.84 5.01 86.77 0.44 4.28 16 25 H 0.25 3.99 7.80 -4.41 -0.03 3.96 16 26 H 0.40 7.81 9.10 -74.06 -0.67 7.13 16 27 H 0.10 2.28 8.03 -2.39 -0.02 2.26 16 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 30 H 0.05 1.81 7.04 -2.39 -0.02 1.79 16 31 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.11 4.46 7.90 -2.91 -0.02 4.44 16 33 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.11 4.07 6.76 -2.91 -0.02 4.05 16 37 H 0.03 1.57 7.77 -2.39 -0.02 1.55 16 38 H 0.05 2.68 8.04 -2.38 -0.02 2.66 16 Total: -1.00 -71.36 319.26 1.21 -70.15 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.23 Total: 25.41 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 4.68 Total: -38.40 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -3.59 Total: -84.21 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -1.96 Total: -19.09 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.85 Total: 46.13 kcal Total: -71.36 1.21 -70.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708152991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.090 kcal (2) G-P(sol) polarization free energy of solvation -71.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds