Wall clock time and date at job start Mon Mar 30 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 110.28967 * 2 1 4 4 C 1.54378 * 110.32259 * 122.12914 * 2 1 3 5 5 N 1.48564 * 104.59700 * 142.74637 * 4 2 1 6 6 C 1.46894 * 111.00014 * 200.95966 * 5 4 2 7 7 C 1.53003 * 109.46999 * 170.00041 * 6 5 4 8 8 O 1.42899 * 109.46702 * 65.00138 * 7 6 5 9 9 C 1.42902 * 113.99768 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47345 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00088 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00393 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00123 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47056 * 89.99558 * 14 12 10 16 16 H 1.48500 * 109.47520 * 209.99874 * 14 12 10 17 17 H 1.48506 * 109.47067 * 330.00183 * 14 12 10 18 18 C 1.48563 * 104.22158 * 320.51823 * 5 4 2 19 19 C 1.54265 * 110.32379 * 237.76214 * 2 1 3 20 20 H 1.09005 * 110.32021 * 122.10581 * 19 2 1 21 21 C 1.50697 * 110.32443 * 0.02562 * 19 2 1 22 22 O 1.20826 * 119.99719 * 272.34564 * 21 19 2 23 23 O 1.34230 * 120.00215 * 92.34561 * 21 19 2 24 24 H 1.08995 * 109.46890 * 303.07152 * 1 2 3 25 25 H 1.09001 * 109.46603 * 63.06990 * 1 2 3 26 26 H 1.08998 * 109.47035 * 183.06514 * 1 2 3 27 27 H 1.09004 * 109.47230 * 180.66934 * 3 2 1 28 28 H 1.09001 * 109.47630 * 300.67477 * 3 2 1 29 29 H 1.09007 * 109.46769 * 60.67262 * 3 2 1 30 30 H 1.09005 * 110.41487 * 23.97059 * 4 2 1 31 31 H 1.08995 * 110.51472 * 261.57897 * 4 2 1 32 32 H 1.09003 * 109.47173 * 290.00006 * 6 5 4 33 33 H 1.08996 * 109.47558 * 50.00225 * 6 5 4 34 34 H 1.08999 * 109.47306 * 184.99930 * 7 6 5 35 35 H 1.08992 * 109.47273 * 304.99900 * 7 6 5 36 36 H 1.09004 * 109.47233 * 300.00114 * 9 8 7 37 37 H 1.09006 * 109.47582 * 59.99678 * 9 8 7 38 38 H 0.96997 * 120.00717 * 180.02562 * 13 12 10 39 39 H 1.08992 * 110.40972 * 158.25774 * 18 5 4 40 40 H 1.08996 * 110.41137 * 280.70501 * 18 5 4 41 41 H 0.96706 * 116.99974 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 6 2.0662 -0.7699 1.2260 5 7 3.2693 -1.4823 0.7239 6 6 3.6067 -2.6203 1.5893 7 6 4.6849 -3.4714 0.9154 8 8 5.8900 -2.7118 0.8028 9 6 6.9665 -3.4181 0.1830 10 6 8.1799 -2.5269 0.1163 11 1 8.1335 -1.5214 0.5077 12 6 9.3489 -2.9947 -0.4453 13 7 9.4054 -4.2189 -0.9224 14 14 10.8527 -1.8896 -0.5286 15 1 11.6652 -2.0658 0.7019 16 1 11.6679 -2.2515 -1.7160 17 1 10.4206 -0.4731 -0.6378 18 6 2.8807 -1.9429 -0.6340 19 6 2.0658 -0.7717 -1.2236 20 1 2.7068 -0.1280 -1.8261 21 6 0.9225 -1.2948 -2.0543 22 8 0.4358 -2.3716 -1.8022 23 8 0.4447 -0.5645 -3.0742 24 1 -0.3633 0.5608 0.8611 25 1 -0.3632 0.4655 -0.9163 26 1 -0.3633 -1.0262 0.0549 27 1 3.1504 1.4195 -0.0120 28 1 1.6949 1.9577 -0.8838 29 1 1.7144 1.9503 0.8960 30 1 1.3229 -1.4834 1.5818 31 1 2.3390 -0.0776 2.0224 32 1 3.9793 -2.2520 2.5452 33 1 2.7165 -3.2268 1.7557 34 1 4.8718 -4.3624 1.5147 35 1 4.3470 -3.7661 -0.0780 36 1 7.2008 -4.3084 0.7668 37 1 6.6757 -3.7114 -0.8258 38 1 10.2279 -4.5482 -1.3171 39 1 3.7670 -2.1320 -1.2394 40 1 2.2648 -2.8398 -0.5694 41 1 -0.2892 -0.9419 -3.5784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709776508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:23 Heat of formation + Delta-G solvation = -141.281470 kcal Electronic energy + Delta-G solvation = -21695.837627 eV Core-core repulsion = 18382.551471 eV Total energy + Delta-G solvation = -3313.286156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.10994 -38.94402 -36.73158 -36.23206 -34.42664 -32.61267 -30.67932 -29.08555 -27.57479 -26.81050 -25.26686 -23.95417 -22.25278 -21.58536 -20.50462 -19.04111 -18.22940 -16.82443 -16.33621 -16.32247 -15.63946 -15.52470 -14.91511 -14.55835 -14.29970 -14.04733 -13.55808 -13.41498 -13.30452 -13.17359 -12.60828 -12.33237 -12.25800 -11.87521 -11.71752 -11.55868 -11.48674 -11.27030 -11.09207 -10.88414 -10.80969 -10.78599 -10.59643 -10.50511 -10.35526 -9.92985 -9.05020 -8.76534 -8.28919 -8.10144 -6.06480 -4.07533 2.03235 2.82734 3.33477 3.38310 3.44185 4.11375 4.22505 4.34218 4.39747 4.67364 4.91257 4.97708 5.11815 5.19796 5.21092 5.30050 5.39194 5.42765 5.51634 5.53736 5.67068 5.72650 5.79446 5.84756 5.92810 5.94524 5.99603 6.05343 6.12960 6.22543 6.31638 6.33143 6.91024 7.11560 7.17731 7.47615 7.73366 7.85217 8.21122 8.65172 9.07085 9.57272 11.05217 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.003998 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.602304 B = 7001.424144 C = 7064.246934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.050 4.050 3 C -0.136 4.136 4 C 0.038 3.962 5 N -0.488 5.488 6 C 0.051 3.949 7 C 0.062 3.938 8 O -0.380 6.380 9 C 0.194 3.806 10 C -0.510 4.510 11 H 0.067 0.933 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.907 3.093 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.271 1.271 18 C 0.042 3.958 19 C -0.084 4.084 20 H 0.116 0.884 21 C 0.494 3.506 22 O -0.516 6.516 23 O -0.515 6.515 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.263 0.737 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.827 8.091 0.105 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.051 4.051 3 C -0.193 4.193 4 C -0.090 4.090 5 N -0.211 5.211 6 C -0.077 4.077 7 C -0.016 4.016 8 O -0.299 6.299 9 C 0.119 3.881 10 C -0.548 4.548 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.734 3.266 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.086 4.086 19 C -0.103 4.103 20 H 0.134 0.866 21 C 0.337 3.663 22 O -0.404 6.404 23 O -0.327 6.327 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -18.993 8.358 0.381 20.754 hybrid contribution -0.383 -0.799 -0.579 1.059 sum -19.377 7.559 -0.198 20.800 Atomic orbital electron populations 1.22157 0.94130 1.02514 1.02661 1.21200 0.95092 0.96237 0.92567 1.21870 1.02484 0.93173 1.01773 1.23324 0.91585 0.97505 0.96617 1.65464 1.31206 1.23229 1.01233 1.22345 0.96568 0.91334 0.97491 1.22298 0.87535 0.93505 0.98259 1.87954 1.19587 1.40594 1.81793 1.20187 0.83958 0.92488 0.91449 1.21063 0.94649 1.00265 1.38864 0.91473 1.24944 0.98937 0.95387 0.95270 1.69964 1.27735 1.15982 1.40324 0.86353 0.81965 0.80756 0.77517 1.20519 1.21162 1.19581 1.23158 0.98774 0.94727 0.91964 1.21979 0.93255 0.99587 0.95518 0.86631 1.23286 0.83154 0.82093 0.77812 1.90702 1.58812 1.22493 1.68415 1.84583 1.52173 1.52220 1.43718 0.91477 0.91972 0.92035 0.90856 0.92422 0.92194 0.93690 0.89420 0.89547 0.93960 0.94124 0.94520 0.97987 0.97951 0.92743 0.88488 0.92001 0.73485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 7.28 37.16 0.27 -1.19 16 2 C -0.05 -0.53 1.03 -153.13 -0.16 -0.69 16 3 C -0.14 -1.30 8.24 37.15 0.31 -0.99 16 4 C 0.04 0.45 5.58 -2.18 -0.01 0.44 16 5 N -0.49 -7.39 5.44 -229.98 -1.25 -8.64 16 6 C 0.05 0.78 5.44 -3.83 -0.02 0.76 16 7 C 0.06 1.18 5.81 37.16 0.22 1.39 16 8 O -0.38 -9.29 10.27 -35.23 -0.36 -9.65 16 9 C 0.19 5.39 5.69 36.01 0.20 5.60 16 10 C -0.51 -15.21 9.43 -34.44 -0.32 -15.54 16 11 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 14 Si 0.91 22.06 29.54 -169.99 -5.02 17.04 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 18 C 0.04 0.61 4.59 -2.18 -0.01 0.60 16 19 C -0.08 -1.01 3.21 -90.39 -0.29 -1.30 16 20 H 0.12 1.35 7.71 -51.93 -0.40 0.95 16 21 C 0.49 5.84 5.25 36.00 0.19 6.03 16 22 O -0.52 -7.44 15.75 -18.75 -0.30 -7.74 16 23 O -0.52 -4.63 13.03 -39.26 -0.51 -5.14 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.55 7.19 -51.93 -0.37 0.17 16 26 H 0.06 0.65 7.03 -51.93 -0.37 0.29 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.04 0.52 7.49 -51.93 -0.39 0.13 16 31 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.04 0.57 7.88 -51.93 -0.41 0.16 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.69 6.56 -51.93 -0.34 0.34 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 37 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.10 1.60 7.56 -51.93 -0.39 1.21 16 40 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 41 H 0.41 1.92 9.10 45.56 0.41 2.33 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -33.79 332.04 -7.37 -41.16 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.94 Total: -2.15 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 0.27 Total: -3.37 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.51 Total: -35.16 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -1.17 Total: -22.53 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.79 -7.37 -41.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709776508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.120 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds